Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20765 and IAI47_20770 are separated by 173 nucleotides IAI47_20770 and IAI47_20775 overlap by 1 nucleotides
IAI47_20765: IAI47_20765 - IclR family transcriptional regulator, at 398,613 to 399,323
_20765
IAI47_20770: IAI47_20770 - RraA family protein, at 399,497 to 400,189
_20770
IAI47_20775: IAI47_20775 - hydroxyacid dehydrogenase, at 400,189 to 401,139
_20775
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 398.553 kb on - strand at 398.579 kb on + strand at 398.579 kb on + strand at 398.579 kb on + strand at 398.579 kb on + strand at 398.580 kb on - strand at 398.602 kb on + strand at 398.602 kb on + strand at 398.660 kb on + strand at 398.660 kb on + strand at 398.696 kb on + strand, within IAI47_20765 at 398.697 kb on - strand, within IAI47_20765 at 398.697 kb on - strand, within IAI47_20765 at 398.811 kb on - strand, within IAI47_20765 at 398.823 kb on + strand, within IAI47_20765 at 398.823 kb on + strand, within IAI47_20765 at 398.824 kb on - strand, within IAI47_20765 at 398.825 kb on + strand, within IAI47_20765 at 398.825 kb on + strand, within IAI47_20765 at 398.826 kb on - strand, within IAI47_20765 at 398.826 kb on - strand, within IAI47_20765 at 398.826 kb on - strand, within IAI47_20765 at 398.826 kb on - strand, within IAI47_20765 at 398.849 kb on + strand, within IAI47_20765 at 398.850 kb on - strand, within IAI47_20765 at 398.907 kb on - strand, within IAI47_20765 at 398.916 kb on - strand, within IAI47_20765 at 399.013 kb on + strand, within IAI47_20765 at 399.013 kb on + strand, within IAI47_20765 at 399.013 kb on + strand, within IAI47_20765 at 399.013 kb on + strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.014 kb on - strand, within IAI47_20765 at 399.071 kb on + strand, within IAI47_20765 at 399.072 kb on - strand, within IAI47_20765 at 399.072 kb on - strand, within IAI47_20765 at 399.097 kb on + strand, within IAI47_20765 at 399.097 kb on + strand, within IAI47_20765 at 399.098 kb on - strand, within IAI47_20765 at 399.112 kb on + strand, within IAI47_20765 at 399.112 kb on + strand, within IAI47_20765 at 399.113 kb on - strand, within IAI47_20765 at 399.113 kb on - strand, within IAI47_20765 at 399.137 kb on - strand, within IAI47_20765 at 399.163 kb on + strand, within IAI47_20765 at 399.163 kb on + strand, within IAI47_20765 at 399.163 kb on + strand, within IAI47_20765 at 399.163 kb on + strand, within IAI47_20765 at 399.163 kb on + strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.164 kb on - strand, within IAI47_20765 at 399.197 kb on - strand, within IAI47_20765 at 399.210 kb on - strand, within IAI47_20765 at 399.214 kb on + strand, within IAI47_20765 at 399.306 kb on + strand at 399.306 kb on + strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.307 kb on - strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.327 kb on + strand at 399.328 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.385 kb on - strand at 399.388 kb on + strand at 399.389 kb on - strand at 399.389 kb on - strand at 399.389 kb on - strand at 399.407 kb on + strand at 399.408 kb on - strand at 399.408 kb on - strand at 399.408 kb on - strand at 399.428 kb on + strand at 399.428 kb on + strand at 399.429 kb on - strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.433 kb on + strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.434 kb on - strand at 399.437 kb on + strand at 399.438 kb on - strand at 399.438 kb on - strand at 399.496 kb on + strand at 399.496 kb on + strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.497 kb on - strand at 399.502 kb on + strand at 399.502 kb on + strand at 399.503 kb on - strand at 399.503 kb on - strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.514 kb on + strand at 399.515 kb on - strand at 399.575 kb on + strand, within IAI47_20770 at 399.576 kb on - strand, within IAI47_20770 at 399.589 kb on - strand, within IAI47_20770 at 399.634 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.676 kb on + strand, within IAI47_20770 at 399.677 kb on - strand, within IAI47_20770 at 399.786 kb on + strand, within IAI47_20770 at 399.786 kb on + strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.800 kb on - strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.841 kb on + strand, within IAI47_20770 at 399.842 kb on - strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.928 kb on + strand, within IAI47_20770 at 399.929 kb on - strand, within IAI47_20770 at 399.950 kb on - strand, within IAI47_20770 at 400.009 kb on + strand, within IAI47_20770 at 400.010 kb on - strand, within IAI47_20770 at 400.137 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.276 kb on + strand at 400.307 kb on + strand, within IAI47_20775 at 400.307 kb on + strand, within IAI47_20775 at 400.359 kb on + strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.360 kb on - strand, within IAI47_20775 at 400.434 kb on + strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.435 kb on - strand, within IAI47_20775 at 400.465 kb on - strand, within IAI47_20775 at 400.515 kb on + strand, within IAI47_20775 at 400.516 kb on - strand, within IAI47_20775 at 400.553 kb on + strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.554 kb on - strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.569 kb on + strand, within IAI47_20775 at 400.582 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.590 kb on + strand, within IAI47_20775 at 400.591 kb on - strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.602 kb on + strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.603 kb on - strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.708 kb on + strand, within IAI47_20775 at 400.709 kb on - strand, within IAI47_20775 at 400.855 kb on - strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.992 kb on + strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 400.993 kb on - strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.015 kb on + strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.016 kb on - strand, within IAI47_20775 at 401.049 kb on + strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.050 kb on - strand at 401.056 kb on + strand at 401.056 kb on + strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.057 kb on - strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.085 kb on + strand at 401.086 kb on - strand at 401.086 kb on - strand at 401.115 kb on + strand at 401.116 kb on - strand at 401.137 kb on + strand at 401.138 kb on - strand at 401.157 kb on + strand at 401.158 kb on - strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.180 kb on + strand at 401.181 kb on - strand at 401.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 398,553 - -1.4 398,579 + +0.2 398,579 + +2.0 398,579 + -0.9 398,579 + +0.4 398,580 - -0.6 398,602 + -0.9 398,602 + +0.0 398,660 + -2.2 398,660 + -2.5 398,696 + IAI47_20765 0.12 -1.8 398,697 - IAI47_20765 0.12 -0.8 398,697 - IAI47_20765 0.12 +1.6 398,811 - IAI47_20765 0.28 +1.4 398,823 + IAI47_20765 0.30 -2.3 398,823 + IAI47_20765 0.30 +0.7 398,824 - IAI47_20765 0.30 -0.3 398,825 + IAI47_20765 0.30 +0.8 398,825 + IAI47_20765 0.30 -1.6 398,826 - IAI47_20765 0.30 +0.5 398,826 - IAI47_20765 0.30 -1.2 398,826 - IAI47_20765 0.30 +0.7 398,826 - IAI47_20765 0.30 +0.5 398,849 + IAI47_20765 0.33 -2.0 398,850 - IAI47_20765 0.33 -0.3 398,907 - IAI47_20765 0.41 +0.2 398,916 - IAI47_20765 0.43 +1.6 399,013 + IAI47_20765 0.56 -0.4 399,013 + IAI47_20765 0.56 -1.9 399,013 + IAI47_20765 0.56 -0.6 399,013 + IAI47_20765 0.56 +1.4 399,014 - IAI47_20765 0.56 +1.0 399,014 - IAI47_20765 0.56 -1.5 399,014 - IAI47_20765 0.56 -2.1 399,014 - IAI47_20765 0.56 -0.7 399,014 - IAI47_20765 0.56 -2.2 399,014 - IAI47_20765 0.56 -2.3 399,014 - IAI47_20765 0.56 -0.2 399,014 - IAI47_20765 0.56 +1.6 399,071 + IAI47_20765 0.64 -0.2 399,072 - IAI47_20765 0.65 -1.9 399,072 - IAI47_20765 0.65 -0.6 399,097 + IAI47_20765 0.68 -0.0 399,097 + IAI47_20765 0.68 -0.6 399,098 - IAI47_20765 0.68 +3.7 399,112 + IAI47_20765 0.70 +1.5 399,112 + IAI47_20765 0.70 -1.6 399,113 - IAI47_20765 0.70 -2.1 399,113 - IAI47_20765 0.70 -0.9 399,137 - IAI47_20765 0.74 -0.6 399,163 + IAI47_20765 0.77 -0.9 399,163 + IAI47_20765 0.77 +0.4 399,163 + IAI47_20765 0.77 +0.1 399,163 + IAI47_20765 0.77 +1.1 399,163 + IAI47_20765 0.77 -0.9 399,164 - IAI47_20765 0.77 +2.2 399,164 - IAI47_20765 0.77 +0.4 399,164 - IAI47_20765 0.77 -1.4 399,164 - IAI47_20765 0.77 -0.1 399,164 - IAI47_20765 0.77 -0.6 399,164 - IAI47_20765 0.77 +1.0 399,164 - IAI47_20765 0.77 -0.2 399,164 - IAI47_20765 0.77 +1.2 399,164 - IAI47_20765 0.77 +1.8 399,164 - IAI47_20765 0.77 +0.6 399,197 - IAI47_20765 0.82 -1.2 399,210 - IAI47_20765 0.84 +1.4 399,214 + IAI47_20765 0.85 -0.5 399,306 + -1.8 399,306 + -0.2 399,307 - -0.7 399,307 - -0.3 399,307 - +0.5 399,327 + +3.3 399,327 + +0.9 399,327 + -1.2 399,327 + -1.0 399,328 - -1.7 399,385 - -1.3 399,385 - +0.8 399,385 - -1.3 399,385 - +2.8 399,388 + +0.1 399,389 - +1.9 399,389 - +1.4 399,389 - -1.6 399,407 + +0.5 399,408 - +0.4 399,408 - +1.4 399,408 - -1.5 399,428 + -0.8 399,428 + +1.7 399,429 - -0.5 399,433 + +0.2 399,433 + +2.7 399,433 + -0.2 399,433 + +0.4 399,433 + +1.4 399,433 + +2.0 399,433 + +0.0 399,433 + +0.3 399,434 - -1.2 399,434 - +0.2 399,434 - +2.2 399,434 - -0.8 399,434 - +0.4 399,434 - +1.4 399,434 - +0.8 399,434 - +0.4 399,437 + -1.4 399,438 - +1.4 399,438 - -0.1 399,496 + +1.4 399,496 + +1.0 399,497 - -0.6 399,497 - -0.6 399,497 - -1.4 399,497 - -0.9 399,497 - -2.2 399,497 - +0.3 399,502 + -1.2 399,502 + +2.0 399,503 - -0.7 399,503 - +1.8 399,514 + +0.2 399,514 + -1.0 399,514 + +0.4 399,514 + -2.2 399,514 + +0.3 399,515 - +0.2 399,575 + IAI47_20770 0.11 +0.2 399,576 - IAI47_20770 0.11 -1.8 399,589 - IAI47_20770 0.13 +0.2 399,634 + IAI47_20770 0.20 +0.4 399,676 + IAI47_20770 0.26 -0.3 399,676 + IAI47_20770 0.26 -2.2 399,676 + IAI47_20770 0.26 -3.4 399,677 - IAI47_20770 0.26 -1.5 399,786 + IAI47_20770 0.42 -3.7 399,786 + IAI47_20770 0.42 -0.9 399,800 - IAI47_20770 0.44 -1.2 399,800 - IAI47_20770 0.44 -0.7 399,800 - IAI47_20770 0.44 +0.1 399,841 + IAI47_20770 0.50 +1.0 399,841 + IAI47_20770 0.50 -1.4 399,841 + IAI47_20770 0.50 +1.4 399,841 + IAI47_20770 0.50 +1.2 399,842 - IAI47_20770 0.50 -0.2 399,928 + IAI47_20770 0.62 +1.1 399,928 + IAI47_20770 0.62 +1.4 399,928 + IAI47_20770 0.62 +0.5 399,929 - IAI47_20770 0.62 +1.4 399,950 - IAI47_20770 0.65 -1.2 400,009 + IAI47_20770 0.74 -2.6 400,010 - IAI47_20770 0.74 -1.6 400,137 + +4.7 400,276 + -2.0 400,276 + -2.2 400,276 + +1.0 400,276 + -0.8 400,307 + IAI47_20775 0.12 -0.4 400,307 + IAI47_20775 0.12 -2.3 400,359 + IAI47_20775 0.18 -0.6 400,360 - IAI47_20775 0.18 -2.6 400,360 - IAI47_20775 0.18 +1.3 400,434 + IAI47_20775 0.26 +2.4 400,435 - IAI47_20775 0.26 +0.6 400,435 - IAI47_20775 0.26 +1.7 400,435 - IAI47_20775 0.26 -0.6 400,435 - IAI47_20775 0.26 +0.5 400,465 - IAI47_20775 0.29 +1.7 400,515 + IAI47_20775 0.34 +0.9 400,516 - IAI47_20775 0.34 +1.8 400,553 + IAI47_20775 0.38 -0.6 400,554 - IAI47_20775 0.38 -0.9 400,554 - IAI47_20775 0.38 -1.4 400,569 + IAI47_20775 0.40 +1.2 400,569 + IAI47_20775 0.40 +2.0 400,569 + IAI47_20775 0.40 +0.9 400,582 + IAI47_20775 0.41 -0.6 400,590 + IAI47_20775 0.42 +3.9 400,590 + IAI47_20775 0.42 -1.8 400,590 + IAI47_20775 0.42 +0.1 400,591 - IAI47_20775 0.42 +0.1 400,602 + IAI47_20775 0.43 +2.2 400,602 + IAI47_20775 0.43 -2.3 400,603 - IAI47_20775 0.44 -1.8 400,603 - IAI47_20775 0.44 -1.7 400,603 - IAI47_20775 0.44 +0.4 400,708 + IAI47_20775 0.55 -1.2 400,708 + IAI47_20775 0.55 +0.8 400,709 - IAI47_20775 0.55 -2.7 400,855 - IAI47_20775 0.70 +0.4 400,992 + IAI47_20775 0.84 -1.3 400,992 + IAI47_20775 0.84 +0.9 400,992 + IAI47_20775 0.84 -0.3 400,993 - IAI47_20775 0.85 -0.7 400,993 - IAI47_20775 0.85 -0.2 400,993 - IAI47_20775 0.85 +2.7 400,993 - IAI47_20775 0.85 -2.6 400,993 - IAI47_20775 0.85 +0.9 400,993 - IAI47_20775 0.85 +0.8 401,015 + IAI47_20775 0.87 +0.9 401,015 + IAI47_20775 0.87 +0.0 401,015 + IAI47_20775 0.87 -0.9 401,015 + IAI47_20775 0.87 -0.8 401,015 + IAI47_20775 0.87 +0.4 401,016 - IAI47_20775 0.87 -1.2 401,016 - IAI47_20775 0.87 -0.4 401,049 + +0.8 401,050 - +1.3 401,050 - -0.2 401,050 - -1.8 401,056 + -1.6 401,056 + -0.9 401,057 - +3.1 401,057 - -0.6 401,057 - +4.2 401,057 - -2.6 401,085 + -1.4 401,085 + +0.4 401,085 + +2.0 401,085 + +2.6 401,086 - +0.1 401,086 - +0.3 401,115 + +1.4 401,116 - +2.3 401,137 + -0.6 401,138 - -1.1 401,157 + -0.6 401,158 - -1.2 401,180 + +0.3 401,180 + -0.9 401,180 + -0.6 401,180 + -0.6 401,180 + +0.4 401,181 - +2.0 401,181 - -0.6
Or see this region's nucleotide sequence