Strain Fitness in Pantoea sp. MT58 around IAI47_17950

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,809,152	+		IAI47_17945	0.12	+1.5
3,809,152	+		IAI47_17945	0.12	-2.7
3,809,152	+		IAI47_17945	0.12	-0.7
3,809,153	-		IAI47_17945	0.12	-0.6
3,809,153	-		IAI47_17945	0.12	-0.8
3,809,153	-		IAI47_17945	0.12	+1.5
3,809,185	-		IAI47_17945	0.16	+0.8
3,809,227	+		IAI47_17945	0.20	+0.8
3,809,227	+		IAI47_17945	0.20	-0.9
3,809,228	-		IAI47_17945	0.20	-2.1
3,809,228	-		IAI47_17945	0.20	+1.9
3,809,228	-		IAI47_17945	0.20	+1.4
3,809,228	-		IAI47_17945	0.20	-0.1
3,809,228	-		IAI47_17945	0.20	-1.4
3,809,228	-		IAI47_17945	0.20	-0.7
3,809,228	-		IAI47_17945	0.20	+0.9
3,809,279	+		IAI47_17945	0.25	+0.4
3,809,279	+		IAI47_17945	0.25	+0.7
3,809,279	+		IAI47_17945	0.25	+0.1
3,809,279	+		IAI47_17945	0.25	+0.2
3,809,279	+		IAI47_17945	0.25	+0.2
3,809,280	-		IAI47_17945	0.25	+0.1
3,809,280	-		IAI47_17945	0.25	+0.5
3,809,280	-		IAI47_17945	0.25	+0.5
3,809,280	-		IAI47_17945	0.25	-3.3
3,809,280	-		IAI47_17945	0.25	-0.4
3,809,280	-		IAI47_17945	0.25	-0.7
3,809,405	+		IAI47_17945	0.38	+0.7
3,809,406	-		IAI47_17945	0.38	+1.6
3,809,406	-		IAI47_17945	0.38	-1.1
3,809,531	-		IAI47_17945	0.50	-0.2
3,809,693	+		IAI47_17945	0.67	-2.6
3,809,693	+		IAI47_17945	0.67	+0.1
3,809,693	+		IAI47_17945	0.67	-0.4
3,809,693	+		IAI47_17945	0.67	+2.0
3,809,693	+		IAI47_17945	0.67	-0.4
3,809,693	+		IAI47_17945	0.67	+0.4
3,809,693	+		IAI47_17945	0.67	-1.5
3,809,693	+		IAI47_17945	0.67	+0.9
3,809,693	+		IAI47_17945	0.67	+0.1
3,809,693	+		IAI47_17945	0.67	-0.0
3,809,694	-		IAI47_17945	0.67	-0.7
3,809,694	-		IAI47_17945	0.67	-0.4
3,809,694	-		IAI47_17945	0.67	-0.0
3,809,694	-		IAI47_17945	0.67	+2.3
3,809,694	-		IAI47_17945	0.67	+0.8
3,809,694	-		IAI47_17945	0.67	-0.2
3,809,694	-		IAI47_17945	0.67	-2.6
3,809,694	-		IAI47_17945	0.67	-0.4
3,809,694	-		IAI47_17945	0.67	+1.6
3,809,694	-		IAI47_17945	0.67	-0.4
3,809,694	-		IAI47_17945	0.67	+0.1
3,809,694	-		IAI47_17945	0.67	-0.4
3,809,694	-		IAI47_17945	0.67	-3.3
3,809,694	-		IAI47_17945	0.67	+0.3
3,809,694	-		IAI47_17945	0.67	+1.1
3,809,694	-		IAI47_17945	0.67	+1.3
3,809,694	-		IAI47_17945	0.67	-0.2
3,809,696	-		IAI47_17945	0.67	-0.6
3,809,696	-		IAI47_17945	0.67	+0.0
3,809,729	-		IAI47_17945	0.70	-1.4
3,809,738	+		IAI47_17945	0.71	+1.9
3,809,738	+		IAI47_17945	0.71	+0.5
3,809,738	+		IAI47_17945	0.71	-2.1
3,809,738	+		IAI47_17945	0.71	-1.4
3,809,738	+		IAI47_17945	0.71	+2.3
3,809,738	+		IAI47_17945	0.71	+1.4
3,809,738	+		IAI47_17945	0.71	+1.9
3,809,738	+		IAI47_17945	0.71	+1.3
3,809,738	+		IAI47_17945	0.71	+0.9
3,809,739	-		IAI47_17945	0.71	+0.3
3,809,739	-		IAI47_17945	0.71	-0.4
3,809,739	-		IAI47_17945	0.71	-0.9
3,809,739	-		IAI47_17945	0.71	+0.0
3,809,739	-		IAI47_17945	0.71	-0.3
3,809,739	-		IAI47_17945	0.71	-0.2
3,809,739	-		IAI47_17945	0.71	-0.0
3,809,739	-		IAI47_17945	0.71	+0.9
3,809,739	-		IAI47_17945	0.71	+0.5
3,809,739	-		IAI47_17945	0.71	-1.4
3,809,788	+		IAI47_17945	0.76	+2.0
3,809,788	+		IAI47_17945	0.76	+1.5
3,809,789	-		IAI47_17945	0.76	+1.1
3,809,791	+		IAI47_17945	0.77	-0.1
3,809,791	+		IAI47_17945	0.77	+2.2
3,809,791	+		IAI47_17945	0.77	-0.2
3,809,937	+				+4.3
3,809,937	+				+0.5
3,809,937	+				-0.3
3,809,937	+				-0.6
3,809,985	+				-0.1
3,809,986	-				-0.1
3,809,986	-				-1.4
3,809,986	-				-0.9
3,809,991	+				-0.1
3,809,991	+				+2.3
3,809,991	+				+1.6
3,809,992	-				+3.1
3,809,992	-				-0.1
3,810,020	+				-0.4
3,810,020	+				-0.8
3,810,044	+				+0.7
3,810,044	+				-2.1
3,810,044	+				-2.8
3,810,044	+				-2.4
3,810,044	+				+0.4
3,810,044	+				-1.9
3,810,044	+				+0.5
3,810,045	-				+0.3
3,810,045	-				-1.6
3,810,045	-				-2.0
3,810,047	+				+0.9
3,810,047	+				-0.2
3,810,048	-				+0.1
3,810,048	-				+0.8
3,810,048	-				+0.6
3,810,137	-				+0.9
3,810,146	+				-1.6
3,810,146	+				-1.7
3,810,146	+				-2.4
3,810,146	+				+0.3
3,810,146	+				+0.0
3,810,147	-				-0.1
3,810,147	-				-1.3
3,810,147	-				+0.7
3,810,147	-				+0.0
3,810,151	+				+0.4
3,810,151	+				+1.4
3,810,151	+				-1.1
3,810,152	-				+0.8
3,810,152	-				-1.0
3,810,152	-				+1.5
3,810,152	-				-0.1
3,810,152	-				-2.5
3,810,152	-				+0.0
3,810,152	-				-1.7
3,810,152	-				-1.1
3,810,152	-				-1.0
3,810,152	-				-3.9
3,810,188	+				+1.8
3,810,188	+				-0.0
3,810,188	+				+1.2
3,810,188	+				+0.2
3,810,189	-				-1.2
3,810,189	-				-0.2
3,810,189	-				+0.2
3,810,189	-				+0.8
3,810,189	-				-0.2
3,810,189	-				-3.1
3,810,189	-				+1.9
3,810,189	-				+1.6
3,810,216	+				+2.9
3,810,216	+				+0.0
3,810,216	+				+2.0
3,810,216	+				+0.2
3,810,216	+				-2.1
3,810,217	-				-1.0
3,810,217	-				-1.2
3,810,217	-				-2.0
3,810,217	-				-0.6
3,810,217	-				-1.1
3,810,253	+				+1.1
3,810,254	-				-2.6
3,810,254	-				+0.5
3,810,254	-				-1.8
3,810,254	-				+1.4
3,810,383	-		IAI47_17950	0.15	-0.4
3,810,383	-		IAI47_17950	0.15	+0.2
3,810,408	-		IAI47_17950	0.17	-3.0
3,810,426	-		IAI47_17950	0.18	+1.9
3,810,520	+		IAI47_17950	0.24	-3.0
3,810,520	+		IAI47_17950	0.24	+0.4
3,810,593	+		IAI47_17950	0.28	+2.2
3,810,681	-		IAI47_17950	0.34	+1.6
3,810,682	+		IAI47_17950	0.34	+0.4
3,810,687	+		IAI47_17950	0.34	+1.9
3,810,687	+		IAI47_17950	0.34	-1.2
3,810,688	-		IAI47_17950	0.34	-1.0
3,810,688	-		IAI47_17950	0.34	-2.3
3,810,862	+		IAI47_17950	0.45	-0.2
3,810,862	+		IAI47_17950	0.45	-3.3
3,810,862	+		IAI47_17950	0.45	-1.3
3,810,862	+		IAI47_17950	0.45	-0.9
3,810,863	-		IAI47_17950	0.45	-0.4
3,810,863	-		IAI47_17950	0.45	-1.6
3,810,863	-		IAI47_17950	0.45	+2.1
3,810,863	-		IAI47_17950	0.45	+0.2
3,810,866	+		IAI47_17950	0.45	+1.8
3,810,867	-		IAI47_17950	0.45	-1.9
3,810,867	-		IAI47_17950	0.45	-0.5
3,810,867	-		IAI47_17950	0.45	+0.1
3,810,867	-		IAI47_17950	0.45	-0.7
3,810,867	-		IAI47_17950	0.45	-1.1
3,810,867	-		IAI47_17950	0.45	+0.4
3,810,886	+		IAI47_17950	0.46	+0.7
3,810,886	+		IAI47_17950	0.46	-2.4
3,810,887	-		IAI47_17950	0.46	-1.4
3,810,887	-		IAI47_17950	0.46	+1.0
3,810,887	-		IAI47_17950	0.46	+1.7
3,810,887	-		IAI47_17950	0.46	+0.4
3,810,906	-		IAI47_17950	0.48	+0.0
3,810,906	-		IAI47_17950	0.48	+0.3
3,810,914	+		IAI47_17950	0.48	-3.1
3,810,926	+		IAI47_17950	0.49	-2.3
3,810,926	+		IAI47_17950	0.49	+2.2
3,810,926	+		IAI47_17950	0.49	-0.2
3,810,927	-		IAI47_17950	0.49	-0.1
3,810,927	-		IAI47_17950	0.49	+1.5
3,810,927	-		IAI47_17950	0.49	-0.0
3,810,927	-		IAI47_17950	0.49	+0.9
3,810,975	+		IAI47_17950	0.52	-1.4
3,810,975	+		IAI47_17950	0.52	+1.3
3,810,976	-		IAI47_17950	0.52	-0.3
3,811,040	+		IAI47_17950	0.56	+0.3
3,811,040	+		IAI47_17950	0.56	+0.3
3,811,040	+		IAI47_17950	0.56	+1.1
3,811,040	+		IAI47_17950	0.56	+0.0
3,811,040	+		IAI47_17950	0.56	-3.0
3,811,040	+		IAI47_17950	0.56	+0.0
3,811,041	-		IAI47_17950	0.56	+0.1
3,811,041	-		IAI47_17950	0.56	+1.0
3,811,041	-		IAI47_17950	0.56	-0.5
3,811,061	+		IAI47_17950	0.57	-0.4
3,811,082	+		IAI47_17950	0.58	-2.7
3,811,082	+		IAI47_17950	0.58	+1.0
3,811,082	+		IAI47_17950	0.58	-1.7
3,811,082	+		IAI47_17950	0.58	-1.8
3,811,082	+		IAI47_17950	0.58	+0.9
3,811,082	+		IAI47_17950	0.58	-0.1
3,811,083	-		IAI47_17950	0.58	-0.1
3,811,083	-		IAI47_17950	0.58	-2.6
3,811,083	-		IAI47_17950	0.58	-0.5
3,811,083	-		IAI47_17950	0.58	-0.1
3,811,083	-		IAI47_17950	0.58	-0.0
3,811,193	+		IAI47_17950	0.65	+1.0
3,811,193	+		IAI47_17950	0.65	+0.6
3,811,193	+		IAI47_17950	0.65	-0.2
3,811,194	-		IAI47_17950	0.65	-1.1
3,811,194	-		IAI47_17950	0.65	-0.3
3,811,194	-		IAI47_17950	0.65	+0.4
3,811,263	+		IAI47_17950	0.70	+0.1
3,811,263	+		IAI47_17950	0.70	-3.1
3,811,263	+		IAI47_17950	0.70	+2.7
3,811,264	-		IAI47_17950	0.70	-0.1
3,811,264	-		IAI47_17950	0.70	+1.1
3,811,264	-		IAI47_17950	0.70	+1.1
3,811,264	-		IAI47_17950	0.70	-2.0
3,811,265	+		IAI47_17950	0.70	-0.4
3,811,266	-		IAI47_17950	0.70	-0.7
3,811,266	-		IAI47_17950	0.70	+1.2
3,811,281	+		IAI47_17950	0.71	+2.5
3,811,282	-		IAI47_17950	0.71	-0.7
3,811,344	-		IAI47_17950	0.75	-2.6
3,811,382	+		IAI47_17950	0.77	-1.6
3,811,383	-		IAI47_17950	0.77	+0.3
3,811,383	-		IAI47_17950	0.77	+2.0
3,811,383	-		IAI47_17950	0.77	-1.9
3,811,453	+		IAI47_17950	0.81	-1.1
3,811,590	+		IAI47_17950	0.90	-0.9
3,811,713	+				+1.3
3,811,713	+				+0.8
3,811,713	+				-3.0
3,811,714	-				-3.0
3,811,714	-				-1.7
3,811,714	-				+0.8
3,811,715	+				-1.0
3,811,716	-				-2.3
3,811,755	+				+1.9
3,811,755	+				-2.3
3,811,755	+				-0.2
3,811,755	+				+0.3
3,811,755	+				-1.6
3,811,756	-				-0.7
3,811,756	-				-0.3
3,811,756	-				+1.0
3,811,756	-				+2.5
3,811,756	-				-1.3
3,811,756	-				+0.8
3,811,807	+				-0.1
3,811,807	+				-0.0
3,811,807	+				-2.0
3,811,808	-				+1.7
3,811,808	-				-3.5
3,811,808	-				-0.8
3,811,808	-				-2.5
3,811,808	-				-0.4
3,811,844	+				+1.5
3,811,845	-				-1.6
3,811,845	-				+2.8
3,811,855	-				-2.6
3,811,855	-				+1.3
3,811,875	-				-0.1
3,811,953	-		IAI47_17955	0.12	-0.3
3,811,953	-		IAI47_17955	0.12	+0.2
3,811,953	-		IAI47_17955	0.12	-0.1
3,812,014	-		IAI47_17955	0.19	-1.5
3,812,082	+		IAI47_17955	0.26	+0.7
3,812,092	+		IAI47_17955	0.27	+1.6
3,812,127	+		IAI47_17955	0.31	+1.5
3,812,128	-		IAI47_17955	0.31	-0.7
3,812,257	-		IAI47_17955	0.45	+0.5
3,812,283	+		IAI47_17955	0.48	+0.4
3,812,283	+		IAI47_17955	0.48	+1.9
3,812,283	+		IAI47_17955	0.48	-0.8
3,812,284	-		IAI47_17955	0.48	-2.2
3,812,284	-		IAI47_17955	0.48	-1.3
3,812,284	-		IAI47_17955	0.48	-2.4
3,812,284	-		IAI47_17955	0.48	+0.7
3,812,284	-		IAI47_17955	0.48	-1.4
3,812,295	+		IAI47_17955	0.49	+0.5
3,812,295	+		IAI47_17955	0.49	-0.3
3,812,323	-		IAI47_17955	0.52	-2.6
3,812,330	+		IAI47_17955	0.53	+1.4
3,812,341	+		IAI47_17955	0.54	-0.6
3,812,424	-		IAI47_17955	0.63	+0.4
3,812,424	-		IAI47_17955	0.63	+0.6
3,812,424	-		IAI47_17955	0.63	-2.3
3,812,499	+		IAI47_17955	0.71	+0.9
3,812,499	+		IAI47_17955	0.71	-1.2
3,812,499	+		IAI47_17955	0.71	-0.1
3,812,499	+		IAI47_17955	0.71	+0.7
3,812,546	+		IAI47_17955	0.77	+0.4
3,812,546	+		IAI47_17955	0.77	+1.2
3,812,546	+		IAI47_17955	0.77	-0.2
3,812,547	-		IAI47_17955	0.77	-2.0
3,812,547	-		IAI47_17955	0.77	-0.9
3,812,547	-		IAI47_17955	0.77	+0.8
3,812,547	-		IAI47_17955	0.77	+1.0
3,812,547	-		IAI47_17955	0.77	+1.0
3,812,569	+		IAI47_17955	0.79	+1.5
3,812,570	-		IAI47_17955	0.79	+1.2
3,812,610	+		IAI47_17955	0.84	-1.9
3,812,610	+		IAI47_17955	0.84	-0.2
3,812,637	+		IAI47_17955	0.86	+0.5
3,812,637	+		IAI47_17955	0.86	+0.4
3,812,637	+		IAI47_17955	0.86	+0.1
3,812,637	+		IAI47_17955	0.86	+2.5
3,812,638	-		IAI47_17955	0.87	+0.5
3,812,638	-		IAI47_17955	0.87	-1.9
3,812,654	+		IAI47_17955	0.88	-0.9
3,812,654	+		IAI47_17955	0.88	-2.1
3,812,654	+		IAI47_17955	0.88	+0.0
3,812,654	+		IAI47_17955	0.88	+0.1
3,812,654	+		IAI47_17955	0.88	-1.4
3,812,654	+		IAI47_17955	0.88	-0.4
3,812,654	+		IAI47_17955	0.88	-0.9
3,812,654	+		IAI47_17955	0.88	+1.0
3,812,654	+		IAI47_17955	0.88	+0.9
3,812,654	+		IAI47_17955	0.88	+0.6
3,812,654	+		IAI47_17955	0.88	+0.9
3,812,655	-		IAI47_17955	0.88	+1.4
3,812,655	-		IAI47_17955	0.88	-0.9
3,812,655	-		IAI47_17955	0.88	-0.0
3,812,655	-		IAI47_17955	0.88	+1.5
3,812,655	-		IAI47_17955	0.88	+0.6
3,812,655	-		IAI47_17955	0.88	-0.7
3,812,685	+				-1.7
3,812,686	-				-0.7
3,812,686	-				-1.3
3,812,696	+				-2.1
3,812,696	+				-0.3
3,812,696	+				-1.3
3,812,697	-				-0.6
3,812,697	-				+1.8
3,812,697	-				+0.0
3,812,697	-				+1.5
3,812,697	-				-1.9
3,812,697	-				+0.5
3,812,697	-				+2.7
3,812,697	-				-2.7
3,812,697	-				+1.2
3,812,697	-				+0.2
3,812,699	+				-2.8
3,812,699	+				-1.3
3,812,699	+				+0.6
3,812,699	+				+0.7
3,812,699	+				-0.9
3,812,700	-				-0.1
3,812,700	-				-2.3
3,812,746	+				+0.5
3,812,746	+				+1.0