Strain Fitness in Pantoea sp. MT58 around IAI47_13960

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_13950 and IAI47_13955 overlap by 4 nucleotidesIAI47_13955 and IAI47_13960 are separated by 82 nucleotidesIAI47_13960 and IAI47_13965 are separated by 4 nucleotides IAI47_13950: IAI47_13950 - PhoH family protein, at 2,948,699 to 2,949,760 _13950 IAI47_13955: IAI47_13955 - rRNA maturation RNase YbeY, at 2,949,757 to 2,950,230 _13955 IAI47_13960: IAI47_13960 - CNNM family magnesium/cobalt transport protein CorC, at 2,950,313 to 2,951,194 _13960 IAI47_13965: IAI47_13965 - apolipoprotein N-acyltransferase, at 2,951,199 to 2,952,722 _13965 Position (kb) 2950 2951 2952Strain fitness (log2 ratio) -1 0 1at 2949.595 kb on + strand, within IAI47_13950

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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2,949,595 + IAI47_13950 0.84 -0.6

Or see this region's nucleotide sequence