Strain Fitness in Pantoea sp. MT58 around IAI47_05405

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,143,146	+		IAI47_05400	0.18	-0.6
1,143,200	+		IAI47_05400	0.23	+0.7
1,143,201	-		IAI47_05400	0.23	-0.9
1,143,217	+		IAI47_05400	0.24	-0.6
1,143,218	-		IAI47_05400	0.24	+0.4
1,143,218	-		IAI47_05400	0.24	+1.0
1,143,218	-		IAI47_05400	0.24	+0.1
1,143,465	+		IAI47_05400	0.47	-0.2
1,143,466	-		IAI47_05400	0.47	+2.9
1,143,466	-		IAI47_05400	0.47	+0.9
1,143,469	+		IAI47_05400	0.47	-1.3
1,143,469	+		IAI47_05400	0.47	-1.9
1,143,469	+		IAI47_05400	0.47	-1.2
1,143,469	+		IAI47_05400	0.47	-1.1
1,143,469	+		IAI47_05400	0.47	+1.7
1,143,469	+		IAI47_05400	0.47	-1.1
1,143,470	-		IAI47_05400	0.47	+1.7
1,143,470	-		IAI47_05400	0.47	+1.2
1,143,470	-		IAI47_05400	0.47	+1.5
1,143,512	-		IAI47_05400	0.51	-0.2
1,143,512	-		IAI47_05400	0.51	-2.7
1,143,536	+		IAI47_05400	0.53	-0.4
1,143,740	+		IAI47_05400	0.72	-1.1
1,143,740	+		IAI47_05400	0.72	-0.4
1,143,740	+		IAI47_05400	0.72	-0.1
1,143,740	+		IAI47_05400	0.72	-4.2
1,143,742	+		IAI47_05400	0.72	+0.6
1,143,742	+		IAI47_05400	0.72	-0.3
1,143,742	+		IAI47_05400	0.72	-1.1
1,143,743	-		IAI47_05400	0.72	-0.9
1,143,743	-		IAI47_05400	0.72	-0.2
1,143,970	-				-1.9
1,143,970	-				+2.9
1,143,992	+				+0.6
1,143,993	-				-1.1
1,143,994	+				-2.0
1,143,994	+				+1.4
1,143,994	+				+0.3
1,143,994	+				+0.2
1,143,994	+				-1.1
1,143,995	-				-0.9
1,144,044	-				-1.0
1,144,044	-				-2.6
1,144,103	+				+1.2
1,144,103	+				-0.0
1,144,142	-				-0.3
1,144,165	+				-1.5
1,144,165	+				-0.6
1,144,166	-				-0.1
1,144,166	-				-0.3
1,144,166	-				-0.3
1,144,222	+		IAI47_05405	0.11	-0.2
1,144,222	+		IAI47_05405	0.11	-3.1
1,144,225	+		IAI47_05405	0.11	+2.1
1,144,226	-		IAI47_05405	0.12	+1.2
1,144,242	+		IAI47_05405	0.13	-0.9
1,144,376	+		IAI47_05405	0.28	-1.5
1,144,549	+		IAI47_05405	0.48	-2.2
1,144,575	-		IAI47_05405	0.51	+0.2
1,144,668	+		IAI47_05405	0.61	+0.1
1,144,669	-		IAI47_05405	0.62	-1.5
1,144,717	-		IAI47_05405	0.67	+0.1
1,144,769	+		IAI47_05405	0.73	-0.8
1,144,769	+		IAI47_05405	0.73	+1.8
1,144,770	-		IAI47_05405	0.73	+1.4
1,144,770	-		IAI47_05405	0.73	-3.6
1,144,770	-		IAI47_05405	0.73	-3.7
1,144,784	+		IAI47_05405	0.75	-1.0
1,144,784	+		IAI47_05405	0.75	-0.3
1,144,784	+		IAI47_05405	0.75	+0.4
1,144,785	-		IAI47_05405	0.75	-2.2
1,144,785	-		IAI47_05405	0.75	-2.6
1,144,785	-		IAI47_05405	0.75	-0.5
1,144,785	-		IAI47_05405	0.75	-0.3
1,144,785	-		IAI47_05405	0.75	+1.2
1,144,816	+		IAI47_05405	0.78	-2.4
1,144,870	+		IAI47_05405	0.84	-0.9
1,144,871	-		IAI47_05405	0.84	-1.8
1,144,930	+				-1.9
1,144,980	-				-2.8
1,144,997	+				+4.3
1,144,997	+				-0.8
1,144,997	+				+0.1
1,144,997	+				-0.1
1,144,998	-				-2.0
1,144,998	-				+0.1
1,144,998	-				+3.5
1,144,998	-				+0.1
1,145,006	+				+0.2
1,145,007	-				+0.7
1,145,007	-				-0.4
1,145,075	+				-2.0
1,145,075	+				-1.5
1,145,075	+				-1.1
1,145,076	-				-0.7
1,145,076	-				-1.5
1,145,076	-				-1.5
1,145,091	+				+0.2
1,145,116	-				-2.0
1,145,152	+				+1.0
1,145,153	-				+0.9
1,145,174	+				+1.3
1,145,174	+				+0.8
1,145,174	+				-1.4
1,145,174	+				+1.9
1,145,175	-				+2.0
1,145,214	-				+0.7
1,145,214	-				-2.0
1,145,225	+				-1.9
1,145,225	+				+1.5
1,145,226	-				+3.7
1,145,226	-				-1.6
1,145,233	+				+0.1
1,145,234	-				+1.0
1,145,301	-		IAI47_05410	0.18	-1.1
1,145,334	+		IAI47_05410	0.23	-1.1
1,145,334	+		IAI47_05410	0.23	+2.9
1,145,334	+		IAI47_05410	0.23	+1.0
1,145,335	-		IAI47_05410	0.23	-1.2
1,145,335	-		IAI47_05410	0.23	+0.6
1,145,335	-		IAI47_05410	0.23	-0.3
1,145,335	-		IAI47_05410	0.23	-0.7
1,145,335	-		IAI47_05410	0.23	+1.7
1,145,335	-		IAI47_05410	0.23	-0.6
1,145,335	-		IAI47_05410	0.23	+2.9
1,145,335	-		IAI47_05410	0.23	-1.5
1,145,335	-		IAI47_05410	0.23	-0.2
1,145,355	+		IAI47_05410	0.26	+3.6
1,145,356	-		IAI47_05410	0.26	-0.3
1,145,363	+		IAI47_05410	0.27	+0.1
1,145,364	-		IAI47_05410	0.27	+1.9
1,145,364	-		IAI47_05410	0.27	+0.1
1,145,364	-		IAI47_05410	0.27	-1.4
1,145,376	-		IAI47_05410	0.29	-0.9
1,145,376	-		IAI47_05410	0.29	+2.0
1,145,403	+		IAI47_05410	0.33	-1.1
1,145,403	+		IAI47_05410	0.33	-1.9
1,145,404	-		IAI47_05410	0.33	-1.0
1,145,404	-		IAI47_05410	0.33	-1.4
1,145,404	-		IAI47_05410	0.33	-0.5
1,145,424	+		IAI47_05410	0.36	+1.6
1,145,425	-		IAI47_05410	0.36	-2.3
1,145,467	+		IAI47_05410	0.42	+1.8
1,145,467	+		IAI47_05410	0.42	+2.4
1,145,467	+		IAI47_05410	0.42	-0.6
1,145,467	+		IAI47_05410	0.42	-1.0
1,145,467	+		IAI47_05410	0.42	+1.4
1,145,467	+		IAI47_05410	0.42	-0.1
1,145,467	+		IAI47_05410	0.42	-2.2
1,145,467	+		IAI47_05410	0.42	-1.3
1,145,467	+		IAI47_05410	0.42	-1.9
1,145,467	+		IAI47_05410	0.42	+0.2
1,145,467	+		IAI47_05410	0.42	+0.8
1,145,467	+		IAI47_05410	0.42	+0.7
1,145,467	+		IAI47_05410	0.42	+0.8
1,145,467	+		IAI47_05410	0.42	-1.8
1,145,467	+		IAI47_05410	0.42	-1.6
1,145,467	+		IAI47_05410	0.42	+0.9
1,145,467	+		IAI47_05410	0.42	+4.5
1,145,468	-		IAI47_05410	0.42	-2.0
1,145,468	-		IAI47_05410	0.42	+0.5
1,145,468	-		IAI47_05410	0.42	+0.1
1,145,468	-		IAI47_05410	0.42	+1.0
1,145,468	-		IAI47_05410	0.42	+3.0
1,145,468	-		IAI47_05410	0.42	+1.0
1,145,468	-		IAI47_05410	0.42	+1.3
1,145,468	-		IAI47_05410	0.42	+2.2
1,145,468	-		IAI47_05410	0.42	+1.9
1,145,468	-		IAI47_05410	0.42	+1.7
1,145,469	+		IAI47_05410	0.43	-1.0
1,145,469	+		IAI47_05410	0.43	-0.4
1,145,469	+		IAI47_05410	0.43	+0.1
1,145,469	+		IAI47_05410	0.43	+0.2
1,145,469	+		IAI47_05410	0.43	+0.7
1,145,470	-		IAI47_05410	0.43	-0.7
1,145,470	-		IAI47_05410	0.43	+2.7
1,145,470	-		IAI47_05410	0.43	+1.0
1,145,470	-		IAI47_05410	0.43	+0.5
1,145,470	-		IAI47_05410	0.43	-1.3
1,145,470	-		IAI47_05410	0.43	-0.0
1,145,470	-		IAI47_05410	0.43	+0.3
1,145,470	-		IAI47_05410	0.43	-1.3
1,145,470	-		IAI47_05410	0.43	-0.1
1,145,470	-		IAI47_05410	0.43	+0.7
1,145,470	-		IAI47_05410	0.43	-2.2
1,145,485	+		IAI47_05410	0.45	+1.1
1,145,519	+		IAI47_05410	0.50	-0.9
1,145,520	-		IAI47_05410	0.50	+2.7
1,145,520	-		IAI47_05410	0.50	+0.9
1,145,670	-		IAI47_05410	0.72	-0.1
1,145,746	+		IAI47_05410	0.83	-0.6
1,145,746	+		IAI47_05410	0.83	+2.3
1,145,746	+		IAI47_05410	0.83	+2.7
1,145,746	+		IAI47_05410	0.83	+1.2
1,145,746	+		IAI47_05410	0.83	-1.1
1,145,747	-		IAI47_05410	0.83	-0.4
1,145,747	-		IAI47_05410	0.83	+0.5
1,145,747	-		IAI47_05410	0.83	+0.1
1,145,769	+		IAI47_05410	0.87	-0.3
1,145,769	+		IAI47_05410	0.87	-0.3
1,145,769	+		IAI47_05410	0.87	-0.2
1,145,769	+		IAI47_05410	0.87	+0.4
1,145,770	-		IAI47_05410	0.87	+0.4
1,145,770	-		IAI47_05410	0.87	+0.8
1,145,770	-		IAI47_05410	0.87	-2.7
1,145,770	-		IAI47_05410	0.87	-0.0
1,145,778	+		IAI47_05410	0.88	+1.3
1,145,779	-		IAI47_05410	0.88	-2.5
1,145,801	+				-1.0
1,145,802	-				-1.1
1,145,936	+				-2.6
1,145,936	+				-0.3
1,145,951	+				-0.4
1,145,952	-				+0.1
1,145,952	-				+0.1