Strain Fitness in Pantoea sp. MT58 around IAI47_05165

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,091,799	+		IAI47_05160	0.54	-1.5
1,091,800	-		IAI47_05160	0.54	+0.1
1,091,843	+		IAI47_05160	0.56	+0.1
1,091,843	+		IAI47_05160	0.56	+1.5
1,091,843	+		IAI47_05160	0.56	+1.5
1,091,844	-		IAI47_05160	0.56	-1.6
1,091,844	-		IAI47_05160	0.56	+1.3
1,091,847	+		IAI47_05160	0.56	-1.1
1,091,847	+		IAI47_05160	0.56	+1.4
1,091,847	+		IAI47_05160	0.56	+2.9
1,091,847	+		IAI47_05160	0.56	+1.0
1,091,847	+		IAI47_05160	0.56	-0.5
1,091,847	+		IAI47_05160	0.56	+0.5
1,091,847	+		IAI47_05160	0.56	+3.3
1,091,847	+		IAI47_05160	0.56	+0.4
1,091,847	+		IAI47_05160	0.56	-0.1
1,091,847	+		IAI47_05160	0.56	+1.6
1,091,848	-		IAI47_05160	0.56	+1.8
1,091,848	-		IAI47_05160	0.56	+0.4
1,091,848	-		IAI47_05160	0.56	+3.3
1,091,848	-		IAI47_05160	0.56	+2.3
1,091,848	-		IAI47_05160	0.56	+0.3
1,091,848	-		IAI47_05160	0.56	+1.0
1,091,848	-		IAI47_05160	0.56	+0.5
1,091,848	-		IAI47_05160	0.56	+1.6
1,091,848	-		IAI47_05160	0.56	-0.1
1,091,905	+		IAI47_05160	0.59	+1.0
1,091,906	-		IAI47_05160	0.59	+0.7
1,091,906	-		IAI47_05160	0.59	-0.4
1,091,906	-		IAI47_05160	0.59	-0.3
1,091,906	-		IAI47_05160	0.59	+0.5
1,091,949	+		IAI47_05160	0.61	+3.3
1,091,950	-		IAI47_05160	0.61	-0.0
1,091,950	-		IAI47_05160	0.61	+2.0
1,091,950	-		IAI47_05160	0.61	-0.1
1,091,963	+		IAI47_05160	0.62	+1.1
1,092,139	+		IAI47_05160	0.70	-1.3
1,092,140	-		IAI47_05160	0.70	+1.1
1,092,154	+		IAI47_05160	0.71	+0.2
1,092,155	-		IAI47_05160	0.71	-0.8
1,092,155	-		IAI47_05160	0.71	-1.9
1,092,251	+		IAI47_05160	0.76	-0.7
1,092,251	+		IAI47_05160	0.76	+1.3
1,092,251	+		IAI47_05160	0.76	+0.6
1,092,251	+		IAI47_05160	0.76	+2.0
1,092,251	+		IAI47_05160	0.76	+1.8
1,092,252	-		IAI47_05160	0.76	-3.3
1,092,253	+		IAI47_05160	0.76	+1.7
1,092,283	-		IAI47_05160	0.77	-1.1
1,092,371	+		IAI47_05160	0.81	+0.1
1,092,372	-		IAI47_05160	0.81	-0.2
1,092,542	+		IAI47_05160	0.89	-0.1
1,092,542	+		IAI47_05160	0.89	+0.8
1,092,606	+				+1.8
1,092,692	+				+1.2
1,092,693	-				+2.7
1,092,735	+				-2.5
1,092,736	-				+1.7
1,092,832	+				+2.0
1,092,832	+				+3.2
1,092,833	-				+2.0
1,092,833	-				+1.3
1,092,850	-				+1.1
1,092,899	+				+1.8
1,092,899	+				+1.7
1,092,900	-				-1.8
1,092,901	+				+2.0
1,092,901	+				+1.5
1,092,901	+				+1.1
1,092,901	+				+1.2
1,092,901	+				+0.7
1,092,902	-				+1.5
1,092,902	-				+2.3
1,093,020	-		IAI47_05165	0.16	+0.8
1,093,020	-		IAI47_05165	0.16	+2.1
1,093,148	+		IAI47_05165	0.24	+0.1
1,093,149	-		IAI47_05165	0.24	+2.0
1,093,149	-		IAI47_05165	0.24	-0.4
1,093,149	-		IAI47_05165	0.24	+1.7
1,093,149	-		IAI47_05165	0.24	+0.7
1,093,149	-		IAI47_05165	0.24	+1.7
1,093,177	+		IAI47_05165	0.26	+0.4
1,093,177	+		IAI47_05165	0.26	-0.2
1,093,177	+		IAI47_05165	0.26	+0.7
1,093,177	+		IAI47_05165	0.26	+0.8
1,093,178	-		IAI47_05165	0.26	+0.1
1,093,178	-		IAI47_05165	0.26	+1.7
1,093,188	+		IAI47_05165	0.26	-0.1
1,093,188	+		IAI47_05165	0.26	+2.4
1,093,188	+		IAI47_05165	0.26	-1.2
1,093,189	-		IAI47_05165	0.26	-0.5
1,093,189	-		IAI47_05165	0.26	+2.9
1,093,189	-		IAI47_05165	0.26	+0.2
1,093,189	-		IAI47_05165	0.26	+3.0
1,093,373	+		IAI47_05165	0.38	-0.3
1,093,373	+		IAI47_05165	0.38	+0.6
1,093,395	+		IAI47_05165	0.39	+0.4
1,093,395	+		IAI47_05165	0.39	-3.2
1,093,395	+		IAI47_05165	0.39	+0.4
1,093,396	-		IAI47_05165	0.39	+0.7
1,093,396	-		IAI47_05165	0.39	+1.6
1,093,464	+		IAI47_05165	0.43	-0.5
1,093,464	+		IAI47_05165	0.43	+1.1
1,093,465	-		IAI47_05165	0.43	+1.0
1,093,465	-		IAI47_05165	0.43	+0.5
1,093,465	-		IAI47_05165	0.43	+1.4
1,093,534	+		IAI47_05165	0.47	+1.3
1,093,534	+		IAI47_05165	0.47	-0.3
1,093,534	+		IAI47_05165	0.47	-0.4
1,093,535	-		IAI47_05165	0.48	+1.7
1,093,535	-		IAI47_05165	0.48	+1.9
1,093,581	+		IAI47_05165	0.50	+1.6
1,093,581	+		IAI47_05165	0.50	-1.2
1,093,644	+		IAI47_05165	0.54	+2.7
1,093,645	-		IAI47_05165	0.54	-1.5
1,093,727	+		IAI47_05165	0.59	-0.3
1,093,727	+		IAI47_05165	0.59	-1.3
1,093,728	-		IAI47_05165	0.59	+0.2
1,093,728	-		IAI47_05165	0.59	-3.0
1,093,809	+		IAI47_05165	0.64	+2.6
1,093,809	+		IAI47_05165	0.64	-0.9
1,093,810	-		IAI47_05165	0.64	+0.9
1,093,810	-		IAI47_05165	0.64	+1.5
1,093,977	+		IAI47_05165	0.75	+0.7
1,093,978	-		IAI47_05165	0.75	+0.1
1,093,985	-		IAI47_05165	0.75	-1.9
1,094,052	+		IAI47_05165	0.79	-2.1
1,094,052	+		IAI47_05165	0.79	+1.0
1,094,052	+		IAI47_05165	0.79	+1.2
1,094,052	+		IAI47_05165	0.79	+1.7
1,094,052	+		IAI47_05165	0.79	+0.3
1,094,052	+		IAI47_05165	0.79	+2.3
1,094,053	-		IAI47_05165	0.79	+1.0
1,094,053	-		IAI47_05165	0.79	-1.6
1,094,053	-		IAI47_05165	0.79	-0.8
1,094,053	-		IAI47_05165	0.79	-0.5
1,094,053	-		IAI47_05165	0.79	+1.6
1,094,053	-		IAI47_05165	0.79	+1.1
1,094,053	-		IAI47_05165	0.79	-0.3
1,094,053	-		IAI47_05165	0.79	+3.1
1,094,148	+		IAI47_05165	0.85	-0.2
1,094,151	+		IAI47_05165	0.85	+0.1
1,094,152	-		IAI47_05165	0.85	+0.0
1,094,152	-		IAI47_05165	0.85	+0.6
1,094,152	-		IAI47_05165	0.85	+0.7
1,094,192	+		IAI47_05165	0.88	+0.8
1,094,193	-		IAI47_05165	0.88	+1.7
1,094,215	+		IAI47_05165	0.89	-2.5
1,094,215	+		IAI47_05165	0.89	-0.3
1,094,215	+		IAI47_05165	0.89	+0.3
1,094,215	+		IAI47_05165	0.89	+2.4
1,094,215	+		IAI47_05165	0.89	+0.5
1,094,215	+		IAI47_05165	0.89	+1.8
1,094,215	+		IAI47_05165	0.89	-1.3
1,094,216	-		IAI47_05165	0.89	+1.4
1,094,216	-		IAI47_05165	0.89	+0.2
1,094,216	-		IAI47_05165	0.89	-1.9
1,094,216	-		IAI47_05165	0.89	+1.5
1,094,216	-		IAI47_05165	0.89	-1.9
1,094,216	-		IAI47_05165	0.89	+0.9
1,094,237	+				+1.7
1,094,263	+				+0.3
1,094,263	+				-0.6
1,094,301	+				+0.6
1,094,302	-				+1.3
1,094,317	+				+2.0
1,094,317	+				-0.2
1,094,318	-				-3.5
1,094,318	-				+1.5
1,094,318	-				-0.6
1,094,329	+				+0.4
1,094,330	-				+1.4
1,094,380	+				-2.5
1,094,380	+				+1.5
1,094,380	+				+0.1
1,094,380	+				+1.8
1,094,380	+				+4.5
1,094,381	-				+2.0
1,094,381	-				+0.8
1,094,381	-				-1.6
1,094,391	-				+1.7
1,094,398	+				-3.6
1,094,398	+				+1.6
1,094,398	+				+0.7
1,094,399	-				+2.5
1,094,404	+				+1.1
1,094,404	+				-0.3
1,094,404	+				+0.0
1,094,404	+				+0.9
1,094,404	+				+2.1
1,094,405	-				+1.9
1,094,405	-				+0.6
1,094,405	-				+0.4
1,094,405	-				-0.1
1,094,405	-				+2.9
1,094,456	+				+1.1
1,094,482	+		IAI47_05170	0.11	+3.9
1,094,483	-		IAI47_05170	0.11	+0.4
1,094,487	-		IAI47_05170	0.11	+0.5
1,094,512	+		IAI47_05170	0.15	+1.2
1,094,512	+		IAI47_05170	0.15	-0.5
1,094,512	+		IAI47_05170	0.15	-1.2
1,094,512	+		IAI47_05170	0.15	+1.6
1,094,513	-		IAI47_05170	0.15	-1.4
1,094,513	-		IAI47_05170	0.15	+1.5
1,094,513	-		IAI47_05170	0.15	-0.1
1,094,566	+		IAI47_05170	0.22	+0.2
1,094,566	+		IAI47_05170	0.22	-2.0
1,094,566	+		IAI47_05170	0.22	+2.0
1,094,566	+		IAI47_05170	0.22	+0.9
1,094,567	-		IAI47_05170	0.22	-0.1
1,094,567	-		IAI47_05170	0.22	-1.1
1,094,572	+		IAI47_05170	0.22	+0.5
1,094,573	-		IAI47_05170	0.22	-1.8
1,094,602	-		IAI47_05170	0.26	+1.0
1,094,681	-		IAI47_05170	0.36	+0.7
1,094,720	+		IAI47_05170	0.41	-0.1
1,094,720	+		IAI47_05170	0.41	+0.1
1,094,720	+		IAI47_05170	0.41	-0.9
1,094,721	-		IAI47_05170	0.42	-1.3
1,094,721	-		IAI47_05170	0.42	-1.0
1,094,735	+		IAI47_05170	0.43	+2.0
1,094,735	+		IAI47_05170	0.43	-0.5
1,094,735	+		IAI47_05170	0.43	+0.5
1,094,736	-		IAI47_05170	0.44	+0.2
1,094,748	+		IAI47_05170	0.45	+0.6
1,094,773	-		IAI47_05170	0.48	-2.3
1,094,773	-		IAI47_05170	0.48	+2.4
1,094,962	+		IAI47_05170	0.73	-2.8
1,094,962	+		IAI47_05170	0.73	+0.8
1,094,962	+		IAI47_05170	0.73	-0.7
1,094,962	+		IAI47_05170	0.73	+1.4
1,094,963	-		IAI47_05170	0.73	-0.2
1,095,059	+		IAI47_05170	0.85	-0.3
1,095,060	-		IAI47_05170	0.85	-0.4
1,095,060	-		IAI47_05170	0.85	+0.7
1,095,070	+		IAI47_05170	0.87	+2.9
1,095,070	+		IAI47_05170	0.87	+0.9
1,095,070	+		IAI47_05170	0.87	+0.6
1,095,070	+		IAI47_05170	0.87	+0.5
1,095,070	+		IAI47_05170	0.87	+2.8
1,095,070	+		IAI47_05170	0.87	-0.7
1,095,071	-		IAI47_05170	0.87	-1.3
1,095,071	-		IAI47_05170	0.87	+1.8
1,095,071	-		IAI47_05170	0.87	+1.9
1,095,071	-		IAI47_05170	0.87	-0.1
1,095,071	-		IAI47_05170	0.87	+0.8
1,095,149	+				-2.7
1,095,149	+				-1.0
1,095,149	+				-1.8
1,095,150	-				+1.0
1,095,150	-				-0.5
1,095,150	-				-1.1
1,095,150	-				-1.6
1,095,150	-				+0.2
1,095,151	+				-0.6
1,095,152	-				+0.4
1,095,152	-				+0.8
1,095,152	-				+1.5
1,095,152	-				+0.7
1,095,165	-				+1.1
1,095,285	-				+0.7
1,095,289	+				-0.3
1,095,289	+				+1.0
1,095,290	-				+1.1
1,095,290	-				+1.6
1,095,290	-				-0.6
1,095,290	-				+1.0
1,095,290	-				+1.8
1,095,290	-				+0.3
1,095,382	+		IAI47_05175	0.17	+0.1
1,095,383	-		IAI47_05175	0.17	-0.2
1,095,383	-		IAI47_05175	0.17	-2.6
1,095,383	-		IAI47_05175	0.17	+1.1
1,095,386	+		IAI47_05175	0.17	-1.6
1,095,386	+		IAI47_05175	0.17	-0.0
1,095,386	+		IAI47_05175	0.17	+0.7
1,095,386	+		IAI47_05175	0.17	-0.3
1,095,386	+		IAI47_05175	0.17	+1.1
1,095,386	+		IAI47_05175	0.17	-0.9
1,095,387	-		IAI47_05175	0.17	+0.4
1,095,387	-		IAI47_05175	0.17	-1.1
1,095,387	-		IAI47_05175	0.17	+0.3
1,095,387	-		IAI47_05175	0.17	-2.8
1,095,387	-		IAI47_05175	0.17	+2.7
1,095,387	-		IAI47_05175	0.17	-1.6
1,095,387	-		IAI47_05175	0.17	+0.4
1,095,387	-		IAI47_05175	0.17	+0.6