Strain Fitness in Pantoea sp. MT58 around IAI47_05160

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,089,674	+		IAI47_05155	0.59	-2.9
1,089,689	+		IAI47_05155	0.59	-2.6
1,089,690	-		IAI47_05155	0.60	-2.0
1,089,734	-		IAI47_05155	0.62	-2.7
1,089,744	+		IAI47_05155	0.62	-0.2
1,089,826	+		IAI47_05155	0.66	-3.8
1,089,827	-		IAI47_05155	0.66	-0.1
1,089,827	-		IAI47_05155	0.66	-2.8
1,089,857	-		IAI47_05155	0.68	-1.3
1,089,857	-		IAI47_05155	0.68	-0.6
1,089,857	-		IAI47_05155	0.68	-1.3
1,089,880	+		IAI47_05155	0.69	-0.6
1,089,880	+		IAI47_05155	0.69	+0.3
1,089,881	-		IAI47_05155	0.69	-0.8
1,089,881	-		IAI47_05155	0.69	-3.7
1,089,881	-		IAI47_05155	0.69	-1.9
1,089,881	-		IAI47_05155	0.69	-1.1
1,089,897	-		IAI47_05155	0.70	+0.1
1,089,897	-		IAI47_05155	0.70	-0.3
1,089,975	-		IAI47_05155	0.73	-0.3
1,090,019	-		IAI47_05155	0.75	-1.5
1,090,025	+		IAI47_05155	0.76	-0.0
1,090,025	+		IAI47_05155	0.76	-2.1
1,090,025	+		IAI47_05155	0.76	-1.8
1,090,025	+		IAI47_05155	0.76	+0.9
1,090,026	-		IAI47_05155	0.76	-1.5
1,090,026	-		IAI47_05155	0.76	-1.8
1,090,026	-		IAI47_05155	0.76	-1.5
1,090,026	-		IAI47_05155	0.76	+1.1
1,090,040	+		IAI47_05155	0.77	-1.8
1,090,040	+		IAI47_05155	0.77	-2.3
1,090,047	+		IAI47_05155	0.77	-0.5
1,090,048	-		IAI47_05155	0.77	-0.9
1,090,057	+		IAI47_05155	0.77	-0.3
1,090,057	+		IAI47_05155	0.77	+1.0
1,090,057	+		IAI47_05155	0.77	+0.1
1,090,057	+		IAI47_05155	0.77	-1.8
1,090,057	+		IAI47_05155	0.77	-0.5
1,090,057	+		IAI47_05155	0.77	-1.3
1,090,057	+		IAI47_05155	0.77	-1.1
1,090,057	+		IAI47_05155	0.77	+0.7
1,090,058	-		IAI47_05155	0.77	-1.1
1,090,058	-		IAI47_05155	0.77	-2.0
1,090,058	-		IAI47_05155	0.77	-2.6
1,090,058	-		IAI47_05155	0.77	-2.0
1,090,058	-		IAI47_05155	0.77	-1.0
1,090,063	+		IAI47_05155	0.78	-1.3
1,090,063	+		IAI47_05155	0.78	+2.1
1,090,063	+		IAI47_05155	0.78	+0.7
1,090,063	+		IAI47_05155	0.78	-1.5
1,090,064	-		IAI47_05155	0.78	-0.1
1,090,064	-		IAI47_05155	0.78	-0.6
1,090,064	-		IAI47_05155	0.78	-1.9
1,090,064	-		IAI47_05155	0.78	+0.0
1,090,147	+		IAI47_05155	0.82	-2.3
1,090,147	+		IAI47_05155	0.82	-2.1
1,090,147	+		IAI47_05155	0.82	-2.5
1,090,148	-		IAI47_05155	0.82	-2.6
1,090,148	-		IAI47_05155	0.82	-2.2
1,090,211	+		IAI47_05155	0.85	-3.4
1,090,211	+		IAI47_05155	0.85	-1.5
1,090,211	+		IAI47_05155	0.85	+0.4
1,090,212	-		IAI47_05155	0.85	-0.5
1,090,212	-		IAI47_05155	0.85	-0.6
1,090,238	+		IAI47_05155	0.86	-2.2
1,090,239	-		IAI47_05155	0.86	-0.5
1,090,240	+		IAI47_05155	0.86	-1.6
1,090,240	+		IAI47_05155	0.86	-0.6
1,090,240	+		IAI47_05155	0.86	-3.3
1,090,240	+		IAI47_05155	0.86	-1.4
1,090,241	-		IAI47_05155	0.86	-1.3
1,090,241	-		IAI47_05155	0.86	+1.2
1,090,241	-		IAI47_05155	0.86	-1.5
1,090,241	-		IAI47_05155	0.86	+0.3
1,090,241	-		IAI47_05155	0.86	-0.3
1,090,241	-		IAI47_05155	0.86	-0.6
1,090,373	+				-1.6
1,090,373	+				+0.2
1,090,374	-				+2.9
1,090,375	+				-3.1
1,090,376	-				+0.7
1,090,391	+				-1.1
1,090,399	+				-0.3
1,090,399	+				-1.1
1,090,400	-				-1.1
1,090,472	+				+1.7
1,090,473	-				-0.5
1,090,488	+				-2.2
1,090,489	-				-1.3
1,090,489	-				-0.7
1,090,502	+				-1.6
1,090,502	+				-1.1
1,090,502	+				-2.7
1,090,502	+				+1.9
1,090,503	-				-2.4
1,090,504	+				-2.8
1,090,504	+				+0.7
1,090,504	+				-3.0
1,090,505	-				-3.0
1,090,537	-				-2.3
1,090,537	-				+0.2
1,090,537	-				-0.7
1,090,575	+				-0.8
1,090,575	+				-0.3
1,090,576	-				-0.1
1,090,586	+				-1.5
1,090,587	-				+0.9
1,090,587	-				+1.0
1,090,619	+				-0.3
1,090,619	+				-0.5
1,090,620	-				-0.8
1,090,620	-				+0.7
1,090,641	+				+1.8
1,090,641	+				+1.0
1,090,642	-				+0.5
1,090,642	-				+2.0
1,090,642	-				-1.5
1,090,642	-				+1.2
1,090,650	-				+1.0
1,090,712	+				-2.6
1,090,712	+				-0.4
1,090,712	+				-0.4
1,090,712	+				+1.1
1,090,712	+				+1.8
1,090,766	-				+1.9
1,090,766	-				+1.4
1,090,774	+				+1.4
1,090,774	+				+0.4
1,090,774	+				+1.9
1,090,775	-				+1.0
1,090,775	-				+0.2
1,090,775	-				+1.3
1,090,775	-				+2.7
1,090,792	+				-0.9
1,090,792	+				+1.9
1,090,792	+				+0.9
1,090,793	-				+0.1
1,090,793	-				+1.9
1,090,816	+				+0.2
1,090,816	+				+0.5
1,090,816	+				+1.9
1,090,816	+				+2.3
1,090,817	-				-1.0
1,090,817	-				+1.7
1,090,817	-				+0.6
1,090,819	+				+1.8
1,090,819	+				+2.0
1,090,819	+				+0.8
1,090,819	+				+1.0
1,090,819	+				+0.6
1,090,819	+				+0.7
1,090,819	+				+1.4
1,090,820	-				+1.7
1,090,820	-				+2.3
1,090,820	-				+0.7
1,090,825	+				+3.3
1,090,826	-				+2.5
1,090,829	+				+0.3
1,090,830	-				-2.0
1,091,048	+		IAI47_05160	0.18	-1.8
1,091,048	+		IAI47_05160	0.18	+1.1
1,091,048	+		IAI47_05160	0.18	+1.2
1,091,048	+		IAI47_05160	0.18	+2.1
1,091,049	-		IAI47_05160	0.18	-1.9
1,091,049	-		IAI47_05160	0.18	-0.7
1,091,049	-		IAI47_05160	0.18	-0.7
1,091,049	-		IAI47_05160	0.18	+1.0
1,091,313	+		IAI47_05160	0.31	+2.9
1,091,313	+		IAI47_05160	0.31	+0.3
1,091,314	-		IAI47_05160	0.31	+1.0
1,091,450	+		IAI47_05160	0.37	+2.3
1,091,451	-		IAI47_05160	0.37	-0.3
1,091,588	+		IAI47_05160	0.44	-2.5
1,091,589	-		IAI47_05160	0.44	-0.4
1,091,589	-		IAI47_05160	0.44	+1.9
1,091,741	+		IAI47_05160	0.51	+2.6
1,091,741	+		IAI47_05160	0.51	+3.3
1,091,799	+		IAI47_05160	0.54	-1.5
1,091,800	-		IAI47_05160	0.54	+0.1
1,091,843	+		IAI47_05160	0.56	+0.1
1,091,843	+		IAI47_05160	0.56	+1.5
1,091,843	+		IAI47_05160	0.56	+1.5
1,091,844	-		IAI47_05160	0.56	-1.6
1,091,844	-		IAI47_05160	0.56	+1.3
1,091,847	+		IAI47_05160	0.56	-1.1
1,091,847	+		IAI47_05160	0.56	+1.4
1,091,847	+		IAI47_05160	0.56	+2.9
1,091,847	+		IAI47_05160	0.56	+1.0
1,091,847	+		IAI47_05160	0.56	-0.5
1,091,847	+		IAI47_05160	0.56	+0.5
1,091,847	+		IAI47_05160	0.56	+3.3
1,091,847	+		IAI47_05160	0.56	+0.4
1,091,847	+		IAI47_05160	0.56	-0.1
1,091,847	+		IAI47_05160	0.56	+1.6
1,091,848	-		IAI47_05160	0.56	+1.8
1,091,848	-		IAI47_05160	0.56	+0.4
1,091,848	-		IAI47_05160	0.56	+3.3
1,091,848	-		IAI47_05160	0.56	+2.3
1,091,848	-		IAI47_05160	0.56	+0.3
1,091,848	-		IAI47_05160	0.56	+1.0
1,091,848	-		IAI47_05160	0.56	+0.5
1,091,848	-		IAI47_05160	0.56	+1.6
1,091,848	-		IAI47_05160	0.56	-0.1
1,091,905	+		IAI47_05160	0.59	+1.0
1,091,906	-		IAI47_05160	0.59	+0.7
1,091,906	-		IAI47_05160	0.59	-0.4
1,091,906	-		IAI47_05160	0.59	-0.3
1,091,906	-		IAI47_05160	0.59	+0.5
1,091,949	+		IAI47_05160	0.61	+3.3
1,091,950	-		IAI47_05160	0.61	-0.0
1,091,950	-		IAI47_05160	0.61	+2.0
1,091,950	-		IAI47_05160	0.61	-0.1
1,091,963	+		IAI47_05160	0.62	+1.1
1,092,139	+		IAI47_05160	0.70	-1.3
1,092,140	-		IAI47_05160	0.70	+1.1
1,092,154	+		IAI47_05160	0.71	+0.2
1,092,155	-		IAI47_05160	0.71	-0.8
1,092,155	-		IAI47_05160	0.71	-1.9
1,092,251	+		IAI47_05160	0.76	-0.7
1,092,251	+		IAI47_05160	0.76	+1.3
1,092,251	+		IAI47_05160	0.76	+0.6
1,092,251	+		IAI47_05160	0.76	+2.0
1,092,251	+		IAI47_05160	0.76	+1.8
1,092,252	-		IAI47_05160	0.76	-3.3
1,092,253	+		IAI47_05160	0.76	+1.7
1,092,283	-		IAI47_05160	0.77	-1.1
1,092,371	+		IAI47_05160	0.81	+0.1
1,092,372	-		IAI47_05160	0.81	-0.2
1,092,542	+		IAI47_05160	0.89	-0.1
1,092,542	+		IAI47_05160	0.89	+0.8
1,092,606	+				+1.8
1,092,692	+				+1.2
1,092,693	-				+2.7
1,092,735	+				-2.5
1,092,736	-				+1.7
1,092,832	+				+2.0
1,092,832	+				+3.2
1,092,833	-				+2.0
1,092,833	-				+1.3
1,092,850	-				+1.1
1,092,899	+				+1.8
1,092,899	+				+1.7
1,092,900	-				-1.8
1,092,901	+				+2.0
1,092,901	+				+1.5
1,092,901	+				+1.1
1,092,901	+				+1.2
1,092,901	+				+0.7
1,092,902	-				+1.5
1,092,902	-				+2.3
1,093,020	-		IAI47_05165	0.16	+0.8
1,093,020	-		IAI47_05165	0.16	+2.1
1,093,148	+		IAI47_05165	0.24	+0.1
1,093,149	-		IAI47_05165	0.24	+2.0
1,093,149	-		IAI47_05165	0.24	-0.4
1,093,149	-		IAI47_05165	0.24	+1.7
1,093,149	-		IAI47_05165	0.24	+0.7
1,093,149	-		IAI47_05165	0.24	+1.7
1,093,177	+		IAI47_05165	0.26	+0.4
1,093,177	+		IAI47_05165	0.26	-0.2
1,093,177	+		IAI47_05165	0.26	+0.7
1,093,177	+		IAI47_05165	0.26	+0.8
1,093,178	-		IAI47_05165	0.26	+0.1
1,093,178	-		IAI47_05165	0.26	+1.7
1,093,188	+		IAI47_05165	0.26	-0.1
1,093,188	+		IAI47_05165	0.26	+2.4
1,093,188	+		IAI47_05165	0.26	-1.2
1,093,189	-		IAI47_05165	0.26	-0.5
1,093,189	-		IAI47_05165	0.26	+2.9
1,093,189	-		IAI47_05165	0.26	+0.2
1,093,189	-		IAI47_05165	0.26	+3.0
1,093,373	+		IAI47_05165	0.38	-0.3
1,093,373	+		IAI47_05165	0.38	+0.6
1,093,395	+		IAI47_05165	0.39	+0.4
1,093,395	+		IAI47_05165	0.39	-3.2
1,093,395	+		IAI47_05165	0.39	+0.4
1,093,396	-		IAI47_05165	0.39	+0.7
1,093,396	-		IAI47_05165	0.39	+1.6
1,093,464	+		IAI47_05165	0.43	-0.5
1,093,464	+		IAI47_05165	0.43	+1.1
1,093,465	-		IAI47_05165	0.43	+1.0
1,093,465	-		IAI47_05165	0.43	+0.5
1,093,465	-		IAI47_05165	0.43	+1.4
1,093,534	+		IAI47_05165	0.47	+1.3
1,093,534	+		IAI47_05165	0.47	-0.3
1,093,534	+		IAI47_05165	0.47	-0.4
1,093,535	-		IAI47_05165	0.48	+1.7
1,093,535	-		IAI47_05165	0.48	+1.9
1,093,581	+		IAI47_05165	0.50	+1.6
1,093,581	+		IAI47_05165	0.50	-1.2
1,093,644	+		IAI47_05165	0.54	+2.7
1,093,645	-		IAI47_05165	0.54	-1.5
1,093,727	+		IAI47_05165	0.59	-0.3
1,093,727	+		IAI47_05165	0.59	-1.3
1,093,728	-		IAI47_05165	0.59	+0.2
1,093,728	-		IAI47_05165	0.59	-3.0