Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03920 and IAI47_03925 are separated by 142 nucleotides IAI47_03925 and IAI47_03930 overlap by 4 nucleotides IAI47_03930 and IAI47_03935 are separated by 191 nucleotides
IAI47_03920: IAI47_03920 - phosphoenolpyruvate--protein phosphotransferase, at 816,251 to 818,497
_03920
IAI47_03925: IAI47_03925 - prolipoprotein diacylglyceryl transferase, at 818,640 to 819,521
_03925
IAI47_03930: IAI47_03930 - thymidylate synthase, at 819,518 to 820,312
_03930
IAI47_03935: IAI47_03935 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 820,504 to 820,974
_03935
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.651 kb on + strand, within IAI47_03920 at 817.652 kb on - strand, within IAI47_03920 at 817.652 kb on - strand, within IAI47_03920 at 817.697 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.705 kb on + strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.706 kb on - strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.778 kb on + strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.779 kb on - strand, within IAI47_03920 at 817.866 kb on + strand, within IAI47_03920 at 817.867 kb on - strand, within IAI47_03920 at 817.867 kb on - strand, within IAI47_03920 at 817.933 kb on + strand, within IAI47_03920 at 817.934 kb on - strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.059 kb on + strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.060 kb on - strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.123 kb on + strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.124 kb on - strand, within IAI47_03920 at 818.146 kb on + strand, within IAI47_03920 at 818.146 kb on + strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.147 kb on - strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.168 kb on + strand, within IAI47_03920 at 818.169 kb on - strand, within IAI47_03920 at 818.169 kb on - strand, within IAI47_03920 at 818.329 kb on + strand at 818.330 kb on - strand at 818.338 kb on - strand at 818.338 kb on - strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.347 kb on + strand at 818.348 kb on - strand at 818.348 kb on - strand at 818.348 kb on - strand at 818.352 kb on - strand at 818.352 kb on - strand at 818.352 kb on - strand at 818.453 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.496 kb on - strand at 818.498 kb on + strand at 818.498 kb on + strand at 818.498 kb on + strand at 818.499 kb on - strand at 818.499 kb on - strand at 818.499 kb on - strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 820.320 kb on + strand at 820.320 kb on + strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.325 kb on - strand at 820.331 kb on + strand at 820.332 kb on - strand at 820.332 kb on - strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.459 kb on - strand at 820.485 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 817,651 + IAI47_03920 0.62 -0.9 817,651 + IAI47_03920 0.62 +0.8 817,651 + IAI47_03920 0.62 +0.9 817,651 + IAI47_03920 0.62 -1.5 817,652 - IAI47_03920 0.62 +1.2 817,652 - IAI47_03920 0.62 +0.5 817,697 + IAI47_03920 0.64 +1.0 817,705 + IAI47_03920 0.65 -0.5 817,705 + IAI47_03920 0.65 -1.8 817,705 + IAI47_03920 0.65 -3.4 817,706 - IAI47_03920 0.65 -0.8 817,706 - IAI47_03920 0.65 -2.9 817,706 - IAI47_03920 0.65 +1.5 817,706 - IAI47_03920 0.65 -0.7 817,706 - IAI47_03920 0.65 -1.9 817,706 - IAI47_03920 0.65 -2.9 817,778 + IAI47_03920 0.68 +2.0 817,778 + IAI47_03920 0.68 -2.4 817,778 + IAI47_03920 0.68 +0.1 817,778 + IAI47_03920 0.68 -0.4 817,778 + IAI47_03920 0.68 +0.2 817,778 + IAI47_03920 0.68 -0.4 817,778 + IAI47_03920 0.68 +0.8 817,778 + IAI47_03920 0.68 +1.0 817,778 + IAI47_03920 0.68 -2.0 817,778 + IAI47_03920 0.68 +0.9 817,778 + IAI47_03920 0.68 +0.4 817,778 + IAI47_03920 0.68 -2.1 817,778 + IAI47_03920 0.68 -0.1 817,778 + IAI47_03920 0.68 +0.2 817,779 - IAI47_03920 0.68 -1.8 817,779 - IAI47_03920 0.68 -0.6 817,779 - IAI47_03920 0.68 +0.0 817,779 - IAI47_03920 0.68 +0.9 817,779 - IAI47_03920 0.68 +0.2 817,779 - IAI47_03920 0.68 -0.2 817,779 - IAI47_03920 0.68 -3.2 817,866 + IAI47_03920 0.72 +0.3 817,867 - IAI47_03920 0.72 -0.1 817,867 - IAI47_03920 0.72 -0.2 817,933 + IAI47_03920 0.75 -0.0 817,934 - IAI47_03920 0.75 +0.1 818,059 + IAI47_03920 0.80 +1.4 818,059 + IAI47_03920 0.80 +0.7 818,059 + IAI47_03920 0.80 +3.2 818,059 + IAI47_03920 0.80 +1.6 818,059 + IAI47_03920 0.80 +0.4 818,059 + IAI47_03920 0.80 -1.7 818,059 + IAI47_03920 0.80 -0.5 818,059 + IAI47_03920 0.80 +1.5 818,060 - IAI47_03920 0.81 -1.8 818,060 - IAI47_03920 0.81 -0.5 818,060 - IAI47_03920 0.81 +2.1 818,123 + IAI47_03920 0.83 -0.8 818,123 + IAI47_03920 0.83 -1.7 818,123 + IAI47_03920 0.83 -0.8 818,123 + IAI47_03920 0.83 +1.6 818,123 + IAI47_03920 0.83 +0.8 818,123 + IAI47_03920 0.83 -0.3 818,123 + IAI47_03920 0.83 -1.5 818,124 - IAI47_03920 0.83 -2.1 818,124 - IAI47_03920 0.83 +2.1 818,124 - IAI47_03920 0.83 +0.5 818,146 + IAI47_03920 0.84 +2.1 818,146 + IAI47_03920 0.84 -0.2 818,147 - IAI47_03920 0.84 -1.0 818,147 - IAI47_03920 0.84 -0.7 818,147 - IAI47_03920 0.84 +1.4 818,168 + IAI47_03920 0.85 -1.6 818,168 + IAI47_03920 0.85 +0.8 818,168 + IAI47_03920 0.85 -1.9 818,169 - IAI47_03920 0.85 +0.8 818,169 - IAI47_03920 0.85 +0.9 818,329 + -0.0 818,330 - -0.2 818,338 - +0.9 818,338 - +1.1 818,347 + +1.8 818,347 + -0.6 818,347 + +0.1 818,347 + -0.8 818,348 - -0.5 818,348 - -0.0 818,348 - -1.0 818,352 - -1.6 818,352 - -0.1 818,352 - +0.2 818,453 - +0.4 818,496 - -1.1 818,496 - +2.7 818,496 - +1.7 818,496 - +0.1 818,496 - +1.4 818,498 + +1.2 818,498 + +0.5 818,498 + -2.3 818,499 - +1.3 818,499 - +1.8 818,499 - +2.2 818,570 + +5.1 818,570 + -1.4 818,570 + +0.1 818,590 + -0.5 818,590 + -0.3 818,590 + -1.8 818,590 + +0.9 818,590 + -0.8 818,590 + -0.4 820,320 + +0.3 820,320 + -2.9 820,321 - +1.6 820,321 - -0.9 820,321 - -0.2 820,324 + +3.5 820,324 + -0.1 820,324 + +0.4 820,324 + -1.8 820,325 - -0.1 820,331 + -1.2 820,332 - -0.2 820,332 - +2.3 820,429 + +0.8 820,429 + -2.1 820,429 + -0.9 820,430 - +0.0 820,430 - +1.3 820,430 - -0.6 820,430 - -0.0 820,459 - -3.0 820,485 + +1.0 820,516 + +1.5 820,516 + +1.7 820,516 + +0.9 820,516 + -0.2 820,516 + -0.2 820,516 + -0.2 820,516 + +1.9 820,516 + -0.5 820,517 - +1.3 820,517 - +0.9 820,517 - +0.0 820,517 - -0.2 820,517 - +2.4 820,517 - +0.0 820,517 - +0.3 820,517 - +0.8 820,517 - +0.4 820,520 + -2.1 820,520 + -0.7 820,520 + +0.3 820,520 + -1.8 820,520 + -0.6 820,520 + +0.6 820,520 + -3.3 820,520 + -0.7 820,520 + +0.1 820,520 + -1.0 820,520 + -0.3 820,521 - +1.9 820,521 - +1.4 820,521 - -3.5 820,521 - +0.9 820,521 - -2.0 820,521 - -2.2 820,521 - -1.0 820,521 - -0.1 820,521 - -0.6 820,521 - +1.0 820,521 - +2.3 820,521 - +0.2 820,521 - -0.3 820,521 - +1.5 820,521 - -0.4 820,521 - +0.5 820,521 - +1.7 820,521 - +0.2
Or see this region's nucleotide sequence