Strain Fitness in Pantoea sp. MT58 around IAI47_03685

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03680 and IAI47_03685 are separated by 314 nucleotidesIAI47_03685 and IAI47_03690 are separated by 51 nucleotides IAI47_03680: IAI47_03680 - transketolase, at 766,889 to 768,883 _03680 IAI47_03685: IAI47_03685 - erythrose-4-phosphate dehydrogenase, at 769,198 to 770,217 _03685 IAI47_03690: IAI47_03690 - phosphoglycerate kinase, at 770,269 to 771,432 _03690 Position (kb) 769 770 771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 768.206 kb on + strand, within IAI47_03680at 768.207 kb on - strand, within IAI47_03680at 768.263 kb on + strand, within IAI47_03680at 768.264 kb on - strand, within IAI47_03680at 768.264 kb on - strand, within IAI47_03680at 768.264 kb on - strand, within IAI47_03680at 768.264 kb on - strand, within IAI47_03680at 768.378 kb on + strand, within IAI47_03680at 768.378 kb on + strand, within IAI47_03680at 768.378 kb on + strand, within IAI47_03680at 768.378 kb on + strand, within IAI47_03680at 768.379 kb on - strand, within IAI47_03680at 768.401 kb on + strand, within IAI47_03680at 768.401 kb on + strand, within IAI47_03680at 768.401 kb on + strand, within IAI47_03680at 768.401 kb on + strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.402 kb on - strand, within IAI47_03680at 768.406 kb on + strand, within IAI47_03680at 768.406 kb on + strand, within IAI47_03680at 768.509 kb on + strand, within IAI47_03680at 768.510 kb on - strand, within IAI47_03680at 768.674 kb on + strand, within IAI47_03680at 768.674 kb on + strand, within IAI47_03680at 768.674 kb on + strand, within IAI47_03680at 768.675 kb on - strand, within IAI47_03680at 768.718 kb on + strandat 768.718 kb on + strandat 768.718 kb on + strandat 768.719 kb on - strandat 768.741 kb on - strandat 768.752 kb on + strandat 768.752 kb on + strandat 768.753 kb on - strandat 768.881 kb on + strandat 768.882 kb on - strandat 768.882 kb on - strandat 768.882 kb on - strandat 768.884 kb on + strandat 768.884 kb on + strandat 768.884 kb on + strandat 768.884 kb on + strandat 768.884 kb on + strandat 768.885 kb on - strandat 768.924 kb on + strandat 768.925 kb on - strandat 768.958 kb on + strandat 768.958 kb on + strandat 768.959 kb on - strandat 768.959 kb on - strandat 768.969 kb on + strandat 768.969 kb on + strandat 768.970 kb on - strandat 768.973 kb on - strandat 769.012 kb on + strandat 769.012 kb on + strandat 769.057 kb on + strandat 769.058 kb on - strandat 769.133 kb on + strandat 769.206 kb on - strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.217 kb on + strandat 769.218 kb on - strandat 769.218 kb on - strandat 769.218 kb on - strandat 769.218 kb on - strandat 769.261 kb on + strandat 769.262 kb on - strandat 769.262 kb on - strandat 769.303 kb on - strand, within IAI47_03685at 769.326 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.345 kb on + strand, within IAI47_03685at 769.346 kb on - strand, within IAI47_03685at 769.350 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.398 kb on + strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.399 kb on - strand, within IAI47_03685at 769.446 kb on - strand, within IAI47_03685at 769.494 kb on + strand, within IAI47_03685at 769.495 kb on - strand, within IAI47_03685at 769.504 kb on + strand, within IAI47_03685at 769.505 kb on - strand, within IAI47_03685at 769.505 kb on - strand, within IAI47_03685at 769.677 kb on + strand, within IAI47_03685at 769.677 kb on + strand, within IAI47_03685at 769.677 kb on + strand, within IAI47_03685at 769.678 kb on - strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.689 kb on + strand, within IAI47_03685at 769.690 kb on - strand, within IAI47_03685at 769.690 kb on - strand, within IAI47_03685at 769.690 kb on - strand, within IAI47_03685at 769.777 kb on + strand, within IAI47_03685at 769.778 kb on - strand, within IAI47_03685at 769.834 kb on - strand, within IAI47_03685at 769.918 kb on - strand, within IAI47_03685at 769.953 kb on + strand, within IAI47_03685at 769.977 kb on + strand, within IAI47_03685at 769.977 kb on + strand, within IAI47_03685at 769.977 kb on + strand, within IAI47_03685at 770.019 kb on + strand, within IAI47_03685at 770.019 kb on + strand, within IAI47_03685at 770.019 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.021 kb on + strand, within IAI47_03685at 770.022 kb on - strand, within IAI47_03685at 770.022 kb on - strand, within IAI47_03685at 770.030 kb on - strand, within IAI47_03685at 770.039 kb on + strand, within IAI47_03685at 770.039 kb on + strand, within IAI47_03685at 770.039 kb on + strand, within IAI47_03685at 770.045 kb on + strand, within IAI47_03685at 770.124 kb on + strandat 770.215 kb on + strandat 770.215 kb on + strandat 770.215 kb on + strandat 770.215 kb on + strandat 770.243 kb on + strandat 770.243 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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768,206 + IAI47_03680 0.66 -1.2
768,207 - IAI47_03680 0.66 +1.1
768,263 + IAI47_03680 0.69 -1.7
768,264 - IAI47_03680 0.69 +0.3
768,264 - IAI47_03680 0.69 +0.5
768,264 - IAI47_03680 0.69 -0.2
768,264 - IAI47_03680 0.69 -3.2
768,378 + IAI47_03680 0.75 -0.9
768,378 + IAI47_03680 0.75 -1.7
768,378 + IAI47_03680 0.75 -2.5
768,378 + IAI47_03680 0.75 -2.8
768,379 - IAI47_03680 0.75 -2.2
768,401 + IAI47_03680 0.76 +1.0
768,401 + IAI47_03680 0.76 +1.2
768,401 + IAI47_03680 0.76 -1.4
768,401 + IAI47_03680 0.76 +1.8
768,402 - IAI47_03680 0.76 -1.2
768,402 - IAI47_03680 0.76 -0.5
768,402 - IAI47_03680 0.76 +0.8
768,402 - IAI47_03680 0.76 -1.0
768,402 - IAI47_03680 0.76 -1.8
768,402 - IAI47_03680 0.76 +1.5
768,402 - IAI47_03680 0.76 -2.5
768,402 - IAI47_03680 0.76 -0.8
768,406 + IAI47_03680 0.76 -1.0
768,406 + IAI47_03680 0.76 -0.8
768,509 + IAI47_03680 0.81 -0.5
768,510 - IAI47_03680 0.81 -2.0
768,674 + IAI47_03680 0.89 -0.0
768,674 + IAI47_03680 0.89 -1.4
768,674 + IAI47_03680 0.89 +0.8
768,675 - IAI47_03680 0.90 +0.6
768,718 + +1.2
768,718 + -1.8
768,718 + +0.6
768,719 - +0.2
768,741 - -0.4
768,752 + +0.5
768,752 + -1.8
768,753 - +0.4
768,881 + -0.5
768,882 - -0.6
768,882 - +1.8
768,882 - +0.8
768,884 + -1.1
768,884 + -3.2
768,884 + +1.4
768,884 + +0.2
768,884 + -1.1
768,885 - -0.2
768,924 + +2.9
768,925 - +0.0
768,958 + +0.2
768,958 + -0.5
768,959 - -0.2
768,959 - +1.3
768,969 + +0.4
768,969 + +1.8
768,970 - +0.9
768,973 - +0.5
769,012 + -1.9
769,012 + -2.7
769,057 + -0.4
769,058 - -2.6
769,133 + +0.4
769,206 - -3.5
769,217 + +0.1
769,217 + -3.2
769,217 + +0.2
769,217 + -2.3
769,217 + -0.7
769,217 + +0.1
769,217 + -2.3
769,217 + -0.1
769,217 + -3.2
769,218 - -2.4
769,218 - -0.8
769,218 - -2.2
769,218 - -3.6
769,261 + -1.0
769,262 - +0.6
769,262 - -0.8
769,303 - IAI47_03685 0.10 -0.2
769,326 + IAI47_03685 0.13 -1.8
769,345 + IAI47_03685 0.14 -3.8
769,345 + IAI47_03685 0.14 +0.4
769,345 + IAI47_03685 0.14 -1.6
769,345 + IAI47_03685 0.14 -0.3
769,346 - IAI47_03685 0.15 -1.4
769,350 + IAI47_03685 0.15 -3.1
769,398 + IAI47_03685 0.20 -0.4
769,398 + IAI47_03685 0.20 +0.2
769,398 + IAI47_03685 0.20 -1.0
769,398 + IAI47_03685 0.20 -1.8
769,398 + IAI47_03685 0.20 -0.5
769,399 - IAI47_03685 0.20 +0.2
769,399 - IAI47_03685 0.20 -1.3
769,399 - IAI47_03685 0.20 -3.4
769,399 - IAI47_03685 0.20 -2.8
769,399 - IAI47_03685 0.20 -1.7
769,446 - IAI47_03685 0.24 -0.8
769,494 + IAI47_03685 0.29 -4.2
769,495 - IAI47_03685 0.29 +1.8
769,504 + IAI47_03685 0.30 +0.8
769,505 - IAI47_03685 0.30 -2.5
769,505 - IAI47_03685 0.30 -0.5
769,677 + IAI47_03685 0.47 -1.7
769,677 + IAI47_03685 0.47 -2.5
769,677 + IAI47_03685 0.47 -1.2
769,678 - IAI47_03685 0.47 -1.4
769,689 + IAI47_03685 0.48 +0.2
769,689 + IAI47_03685 0.48 -1.2
769,689 + IAI47_03685 0.48 -1.3
769,689 + IAI47_03685 0.48 -0.5
769,690 - IAI47_03685 0.48 -2.5
769,690 - IAI47_03685 0.48 -3.6
769,690 - IAI47_03685 0.48 -0.4
769,777 + IAI47_03685 0.57 -0.3
769,778 - IAI47_03685 0.57 +1.8
769,834 - IAI47_03685 0.62 -0.1
769,918 - IAI47_03685 0.71 -2.1
769,953 + IAI47_03685 0.74 -0.9
769,977 + IAI47_03685 0.76 +2.2
769,977 + IAI47_03685 0.76 +0.9
769,977 + IAI47_03685 0.76 +0.4
770,019 + IAI47_03685 0.80 -2.0
770,019 + IAI47_03685 0.80 -1.0
770,019 + IAI47_03685 0.80 -2.0
770,021 + IAI47_03685 0.81 -2.1
770,021 + IAI47_03685 0.81 -2.9
770,021 + IAI47_03685 0.81 -1.3
770,021 + IAI47_03685 0.81 -2.6
770,021 + IAI47_03685 0.81 -0.6
770,021 + IAI47_03685 0.81 -3.0
770,022 - IAI47_03685 0.81 -0.5
770,022 - IAI47_03685 0.81 -2.0
770,030 - IAI47_03685 0.82 -1.2
770,039 + IAI47_03685 0.82 -1.4
770,039 + IAI47_03685 0.82 +0.7
770,039 + IAI47_03685 0.82 +0.2
770,045 + IAI47_03685 0.83 +0.1
770,124 + -1.0
770,215 + +0.4
770,215 + +1.6
770,215 + -1.2
770,215 + +1.1
770,243 + -0.8
770,243 + -1.8

Or see this region's nucleotide sequence