Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03580 and IAI47_03585 overlap by 8 nucleotides IAI47_03585 and IAI47_03590 are separated by 21 nucleotides IAI47_03590 and IAI47_03595 are separated by 12 nucleotides IAI47_03595 and IAI47_03600 are separated by 14 nucleotides
IAI47_03580: IAI47_03580 - radical SAM family heme chaperone HemW, at 747,276 to 748,415
_03580
IAI47_03585: IAI47_03585 - XTP/dITP diphosphatase, at 748,408 to 749,001
_03585
IAI47_03590: IAI47_03590 - YggT family protein, at 749,023 to 749,577
_03590
IAI47_03595: IAI47_03595 - YggS family pyridoxal phosphate-dependent enzyme, at 749,590 to 750,297
_03595
IAI47_03600: IAI47_03600 - type IV pilus twitching motility protein PilT, at 750,312 to 751,319
_03600
Position (kb) 749
750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 748.055 kb on + strand, within IAI47_03580 at 748.055 kb on + strand, within IAI47_03580 at 748.056 kb on - strand, within IAI47_03580 at 748.056 kb on - strand, within IAI47_03580 at 748.061 kb on + strand, within IAI47_03580 at 748.061 kb on + strand, within IAI47_03580 at 748.064 kb on + strand, within IAI47_03580 at 748.064 kb on + strand, within IAI47_03580 at 748.065 kb on - strand, within IAI47_03580 at 748.078 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.296 kb on + strand, within IAI47_03580 at 748.297 kb on - strand, within IAI47_03580 at 748.297 kb on - strand, within IAI47_03580 at 748.297 kb on - strand, within IAI47_03580 at 748.297 kb on - strand, within IAI47_03580 at 748.297 kb on - strand, within IAI47_03580 at 748.300 kb on + strand, within IAI47_03580 at 748.300 kb on + strand, within IAI47_03580 at 748.300 kb on + strand, within IAI47_03580 at 748.301 kb on - strand, within IAI47_03580 at 748.301 kb on - strand, within IAI47_03580 at 748.301 kb on - strand, within IAI47_03580 at 748.301 kb on - strand, within IAI47_03580 at 748.301 kb on - strand, within IAI47_03580 at 748.327 kb on - strand at 748.327 kb on - strand at 748.340 kb on + strand at 748.351 kb on + strand at 748.365 kb on + strand at 748.365 kb on + strand at 748.365 kb on + strand at 748.385 kb on + strand at 748.386 kb on - strand at 748.387 kb on + strand at 748.387 kb on + strand at 748.387 kb on + strand at 748.387 kb on + strand at 748.387 kb on + strand at 748.387 kb on + strand at 748.387 kb on + strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.388 kb on - strand at 748.395 kb on + strand at 748.395 kb on + strand at 748.395 kb on + strand at 748.396 kb on - strand at 748.409 kb on + strand at 748.410 kb on - strand at 748.410 kb on - strand at 748.410 kb on - strand at 748.416 kb on + strand at 748.416 kb on + strand at 748.416 kb on + strand at 748.416 kb on + strand at 748.416 kb on + strand at 748.416 kb on + strand at 748.417 kb on - strand at 748.417 kb on - strand at 748.417 kb on - strand at 748.417 kb on - strand at 748.417 kb on - strand at 748.417 kb on - strand at 748.449 kb on + strand at 748.504 kb on - strand, within IAI47_03585 at 748.504 kb on - strand, within IAI47_03585 at 748.536 kb on - strand, within IAI47_03585 at 748.536 kb on - strand, within IAI47_03585 at 748.631 kb on + strand, within IAI47_03585 at 748.631 kb on + strand, within IAI47_03585 at 748.631 kb on + strand, within IAI47_03585 at 748.632 kb on - strand, within IAI47_03585 at 748.632 kb on - strand, within IAI47_03585 at 748.632 kb on - strand, within IAI47_03585 at 748.740 kb on - strand, within IAI47_03585 at 748.751 kb on + strand, within IAI47_03585 at 748.752 kb on - strand, within IAI47_03585 at 748.752 kb on - strand, within IAI47_03585 at 748.752 kb on - strand, within IAI47_03585 at 748.752 kb on - strand, within IAI47_03585 at 748.752 kb on - strand, within IAI47_03585 at 748.752 kb on - strand, within IAI47_03585 at 748.864 kb on - strand, within IAI47_03585 at 748.921 kb on - strand, within IAI47_03585 at 748.942 kb on + strand at 748.942 kb on + strand at 748.943 kb on - strand at 749.002 kb on - strand at 749.002 kb on - strand at 749.024 kb on + strand at 749.025 kb on - strand at 749.025 kb on - strand at 749.033 kb on + strand at 749.033 kb on + strand at 749.033 kb on + strand at 749.078 kb on + strand at 749.078 kb on + strand at 749.078 kb on + strand at 749.078 kb on + strand at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.079 kb on - strand, within IAI47_03590 at 749.137 kb on - strand, within IAI47_03590 at 749.183 kb on + strand, within IAI47_03590 at 749.183 kb on + strand, within IAI47_03590 at 749.183 kb on + strand, within IAI47_03590 at 749.209 kb on - strand, within IAI47_03590 at 749.230 kb on + strand, within IAI47_03590 at 749.230 kb on + strand, within IAI47_03590 at 749.230 kb on + strand, within IAI47_03590 at 749.230 kb on + strand, within IAI47_03590 at 749.230 kb on + strand, within IAI47_03590 at 749.231 kb on - strand, within IAI47_03590 at 749.231 kb on - strand, within IAI47_03590 at 749.255 kb on + strand, within IAI47_03590 at 749.256 kb on - strand, within IAI47_03590 at 749.256 kb on - strand, within IAI47_03590 at 749.268 kb on + strand, within IAI47_03590 at 749.298 kb on + strand, within IAI47_03590 at 749.299 kb on - strand, within IAI47_03590 at 749.332 kb on + strand, within IAI47_03590 at 749.332 kb on + strand, within IAI47_03590 at 749.332 kb on + strand, within IAI47_03590 at 749.333 kb on - strand, within IAI47_03590 at 749.338 kb on + strand, within IAI47_03590 at 749.339 kb on - strand, within IAI47_03590 at 749.339 kb on - strand, within IAI47_03590 at 749.391 kb on + strand, within IAI47_03590 at 749.391 kb on + strand, within IAI47_03590 at 749.391 kb on + strand at 749.392 kb on - strand, within IAI47_03590 at 749.416 kb on + strand, within IAI47_03590 at 749.417 kb on - strand, within IAI47_03590 at 749.417 kb on - strand, within IAI47_03590 at 749.480 kb on + strand, within IAI47_03590 at 749.515 kb on + strand, within IAI47_03590 at 749.515 kb on + strand, within IAI47_03590 at 749.516 kb on - strand, within IAI47_03590 at 749.516 kb on - strand, within IAI47_03590 at 749.534 kb on + strand at 749.534 kb on + strand at 749.554 kb on + strand at 749.572 kb on + strand at 749.572 kb on + strand at 749.589 kb on - strand at 749.589 kb on - strand at 749.589 kb on - strand at 749.591 kb on + strand at 749.591 kb on + strand at 749.591 kb on + strand at 749.592 kb on - strand at 749.592 kb on - strand at 749.592 kb on - strand at 749.592 kb on - strand at 749.592 kb on - strand at 749.592 kb on - strand at 749.612 kb on + strand at 749.613 kb on - strand at 749.643 kb on + strand at 749.644 kb on - strand at 749.656 kb on - strand at 749.709 kb on + strand, within IAI47_03595 at 749.710 kb on - strand, within IAI47_03595 at 749.710 kb on - strand, within IAI47_03595 at 749.723 kb on + strand, within IAI47_03595 at 749.723 kb on + strand, within IAI47_03595 at 749.724 kb on - strand, within IAI47_03595 at 749.724 kb on - strand, within IAI47_03595 at 749.724 kb on - strand, within IAI47_03595 at 749.724 kb on - strand, within IAI47_03595 at 749.786 kb on + strand, within IAI47_03595 at 749.913 kb on + strand, within IAI47_03595 at 749.913 kb on + strand, within IAI47_03595 at 749.913 kb on + strand, within IAI47_03595 at 749.913 kb on + strand, within IAI47_03595 at 749.913 kb on + strand, within IAI47_03595 at 749.913 kb on + strand, within IAI47_03595 at 749.914 kb on - strand, within IAI47_03595 at 749.914 kb on - strand, within IAI47_03595 at 749.914 kb on - strand, within IAI47_03595 at 749.918 kb on - strand, within IAI47_03595 at 749.918 kb on - strand, within IAI47_03595 at 749.927 kb on - strand, within IAI47_03595 at 749.927 kb on - strand, within IAI47_03595 at 749.982 kb on + strand, within IAI47_03595 at 749.983 kb on - strand, within IAI47_03595 at 750.126 kb on - strand, within IAI47_03595 at 750.193 kb on - strand, within IAI47_03595 at 750.210 kb on + strand, within IAI47_03595 at 750.274 kb on + strand at 750.274 kb on + strand at 750.275 kb on - strand at 750.275 kb on - strand at 750.275 kb on - strand at 750.297 kb on + strand at 750.297 kb on + strand at 750.297 kb on + strand at 750.297 kb on + strand at 750.298 kb on - strand at 750.298 kb on - strand at 750.298 kb on - strand at 750.298 kb on - strand at 750.298 kb on - strand at 750.298 kb on - strand at 750.312 kb on - strand at 750.338 kb on + strand at 750.338 kb on + strand at 750.338 kb on + strand at 750.339 kb on - strand at 750.339 kb on - strand at 750.343 kb on + strand at 750.343 kb on + strand at 750.344 kb on - strand at 750.344 kb on - strand at 750.344 kb on - strand at 750.344 kb on - strand at 750.350 kb on + strand at 750.350 kb on + strand at 750.350 kb on + strand at 750.350 kb on + strand at 750.350 kb on + strand at 750.350 kb on + strand at 750.351 kb on - strand at 750.351 kb on - strand at 750.351 kb on - strand at 750.351 kb on - strand at 750.351 kb on - strand at 750.465 kb on - strand, within IAI47_03600 at 750.572 kb on + strand, within IAI47_03600 at 750.573 kb on - strand, within IAI47_03600
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 748,055 + IAI47_03580 0.68 +1.5 748,055 + IAI47_03580 0.68 -0.5 748,056 - IAI47_03580 0.68 -2.4 748,056 - IAI47_03580 0.68 -1.9 748,061 + IAI47_03580 0.69 +0.8 748,061 + IAI47_03580 0.69 +0.8 748,064 + IAI47_03580 0.69 +0.2 748,064 + IAI47_03580 0.69 -1.0 748,065 - IAI47_03580 0.69 +0.2 748,078 + IAI47_03580 0.70 -1.8 748,296 + IAI47_03580 0.89 +0.1 748,296 + IAI47_03580 0.89 -0.8 748,296 + IAI47_03580 0.89 -1.0 748,296 + IAI47_03580 0.89 -0.9 748,296 + IAI47_03580 0.89 -1.8 748,296 + IAI47_03580 0.89 +0.5 748,296 + IAI47_03580 0.89 -1.6 748,296 + IAI47_03580 0.89 +0.5 748,296 + IAI47_03580 0.89 -1.8 748,296 + IAI47_03580 0.89 +1.5 748,296 + IAI47_03580 0.89 +1.5 748,296 + IAI47_03580 0.89 -1.0 748,297 - IAI47_03580 0.90 +0.0 748,297 - IAI47_03580 0.90 -0.6 748,297 - IAI47_03580 0.90 +0.8 748,297 - IAI47_03580 0.90 +1.9 748,297 - IAI47_03580 0.90 +1.0 748,300 + IAI47_03580 0.90 +0.6 748,300 + IAI47_03580 0.90 +1.8 748,300 + IAI47_03580 0.90 +1.0 748,301 - IAI47_03580 0.90 -0.8 748,301 - IAI47_03580 0.90 +2.2 748,301 - IAI47_03580 0.90 -1.7 748,301 - IAI47_03580 0.90 +1.8 748,301 - IAI47_03580 0.90 -1.7 748,327 - -0.7 748,327 - -0.5 748,340 + +0.7 748,351 + +0.7 748,365 + +1.1 748,365 + -2.6 748,365 + +2.9 748,385 + +0.2 748,386 - -1.4 748,387 + +2.6 748,387 + +0.8 748,387 + -0.4 748,387 + +1.1 748,387 + -3.2 748,387 + -1.4 748,387 + +1.5 748,388 - -0.8 748,388 - +1.2 748,388 - +1.2 748,388 - +3.7 748,388 - -0.8 748,388 - -0.2 748,388 - -2.4 748,388 - -0.7 748,388 - -0.2 748,388 - +0.8 748,388 - +1.8 748,388 - +0.3 748,388 - -1.5 748,395 + -1.7 748,395 + -1.8 748,395 + -2.0 748,396 - +0.2 748,409 + -0.1 748,410 - -0.2 748,410 - -0.5 748,410 - -0.8 748,416 + -2.4 748,416 + -0.7 748,416 + -0.9 748,416 + -0.5 748,416 + +2.6 748,416 + -0.6 748,417 - -3.5 748,417 - -1.0 748,417 - +0.1 748,417 - -0.2 748,417 - +1.2 748,417 - -1.8 748,449 + -1.4 748,504 - IAI47_03585 0.16 +0.8 748,504 - IAI47_03585 0.16 +1.2 748,536 - IAI47_03585 0.22 +0.4 748,536 - IAI47_03585 0.22 -1.8 748,631 + IAI47_03585 0.38 +0.8 748,631 + IAI47_03585 0.38 -2.0 748,631 + IAI47_03585 0.38 +0.2 748,632 - IAI47_03585 0.38 +0.6 748,632 - IAI47_03585 0.38 +0.4 748,632 - IAI47_03585 0.38 +1.4 748,740 - IAI47_03585 0.56 +2.3 748,751 + IAI47_03585 0.58 -1.9 748,752 - IAI47_03585 0.58 -1.5 748,752 - IAI47_03585 0.58 +2.1 748,752 - IAI47_03585 0.58 -0.7 748,752 - IAI47_03585 0.58 -0.2 748,752 - IAI47_03585 0.58 -1.8 748,752 - IAI47_03585 0.58 +0.7 748,864 - IAI47_03585 0.77 +0.8 748,921 - IAI47_03585 0.86 -1.3 748,942 + +1.2 748,942 + -0.2 748,943 - -2.8 749,002 - -0.7 749,002 - +1.2 749,024 + +1.0 749,025 - +0.5 749,025 - -1.5 749,033 + -0.8 749,033 + -1.5 749,033 + -1.0 749,078 + +0.5 749,078 + -0.0 749,078 + -1.4 749,078 + -0.1 749,079 - IAI47_03590 0.10 +2.5 749,079 - IAI47_03590 0.10 -0.9 749,079 - IAI47_03590 0.10 +2.2 749,079 - IAI47_03590 0.10 -2.2 749,079 - IAI47_03590 0.10 -3.4 749,079 - IAI47_03590 0.10 -0.7 749,079 - IAI47_03590 0.10 -0.5 749,079 - IAI47_03590 0.10 -0.4 749,137 - IAI47_03590 0.21 -1.4 749,183 + IAI47_03590 0.29 +4.6 749,183 + IAI47_03590 0.29 -2.2 749,183 + IAI47_03590 0.29 +0.2 749,209 - IAI47_03590 0.34 +1.2 749,230 + IAI47_03590 0.37 -1.4 749,230 + IAI47_03590 0.37 -1.0 749,230 + IAI47_03590 0.37 +0.8 749,230 + IAI47_03590 0.37 +0.4 749,230 + IAI47_03590 0.37 -1.5 749,231 - IAI47_03590 0.37 -0.8 749,231 - IAI47_03590 0.37 -0.1 749,255 + IAI47_03590 0.42 +0.1 749,256 - IAI47_03590 0.42 +0.9 749,256 - IAI47_03590 0.42 +2.4 749,268 + IAI47_03590 0.44 -0.4 749,298 + IAI47_03590 0.50 +2.0 749,299 - IAI47_03590 0.50 +0.3 749,332 + IAI47_03590 0.56 -1.4 749,332 + IAI47_03590 0.56 -1.4 749,332 + IAI47_03590 0.56 +0.3 749,333 - IAI47_03590 0.56 +0.1 749,338 + IAI47_03590 0.57 -1.2 749,339 - IAI47_03590 0.57 -0.0 749,339 - IAI47_03590 0.57 -0.5 749,391 + IAI47_03590 0.66 -0.0 749,391 + IAI47_03590 0.66 -1.2 749,391 + +1.8 749,392 - IAI47_03590 0.66 +1.6 749,416 + IAI47_03590 0.71 -1.1 749,417 - IAI47_03590 0.71 -2.9 749,417 - IAI47_03590 0.71 -1.1 749,480 + IAI47_03590 0.82 +0.2 749,515 + IAI47_03590 0.89 -1.4 749,515 + IAI47_03590 0.89 -0.0 749,516 - IAI47_03590 0.89 -2.3 749,516 - IAI47_03590 0.89 -2.8 749,534 + +0.8 749,534 + -0.9 749,554 + +0.3 749,572 + -2.8 749,572 + +0.4 749,589 - +0.1 749,589 - +0.8 749,589 - -1.1 749,591 + -2.1 749,591 + -1.4 749,591 + -1.4 749,592 - -0.3 749,592 - +0.5 749,592 - -1.9 749,592 - -1.0 749,592 - +2.6 749,592 - -2.4 749,612 + +2.8 749,613 - -1.7 749,643 + +1.8 749,644 - -1.4 749,656 - -2.3 749,709 + IAI47_03595 0.17 -1.8 749,710 - IAI47_03595 0.17 -1.9 749,710 - IAI47_03595 0.17 +1.1 749,723 + IAI47_03595 0.19 -1.1 749,723 + IAI47_03595 0.19 -1.4 749,724 - IAI47_03595 0.19 +0.6 749,724 - IAI47_03595 0.19 +0.2 749,724 - IAI47_03595 0.19 +0.1 749,724 - IAI47_03595 0.19 -1.5 749,786 + IAI47_03595 0.28 -1.0 749,913 + IAI47_03595 0.46 +0.2 749,913 + IAI47_03595 0.46 -1.0 749,913 + IAI47_03595 0.46 +1.1 749,913 + IAI47_03595 0.46 +0.2 749,913 + IAI47_03595 0.46 -1.9 749,913 + IAI47_03595 0.46 -1.7 749,914 - IAI47_03595 0.46 -0.1 749,914 - IAI47_03595 0.46 -2.9 749,914 - IAI47_03595 0.46 +0.8 749,918 - IAI47_03595 0.46 -0.9 749,918 - IAI47_03595 0.46 +0.0 749,927 - IAI47_03595 0.48 -3.4 749,927 - IAI47_03595 0.48 +0.7 749,982 + IAI47_03595 0.55 -2.9 749,983 - IAI47_03595 0.56 -0.2 750,126 - IAI47_03595 0.76 -0.6 750,193 - IAI47_03595 0.85 -0.5 750,210 + IAI47_03595 0.88 -1.4 750,274 + +0.2 750,274 + +1.8 750,275 - -1.0 750,275 - -0.4 750,275 - +1.1 750,297 + -3.1 750,297 + +0.7 750,297 + +0.1 750,297 + -1.2 750,298 - -0.1 750,298 - -1.1 750,298 - +0.1 750,298 - +0.7 750,298 - +2.0 750,298 - -1.2 750,312 - +4.0 750,338 + -2.6 750,338 + -0.8 750,338 + +0.8 750,339 - +0.3 750,339 - +0.8 750,343 + +0.0 750,343 + -0.2 750,344 - -2.5 750,344 - -0.2 750,344 - +0.2 750,344 - +1.5 750,350 + -1.8 750,350 + -2.2 750,350 + -1.1 750,350 + -0.4 750,350 + -1.0 750,350 + +0.4 750,351 - +0.5 750,351 - +0.1 750,351 - +0.8 750,351 - -0.9 750,351 - +1.3 750,465 - IAI47_03600 0.15 +2.0 750,572 + IAI47_03600 0.26 +1.1 750,573 - IAI47_03600 0.26 -0.2
Or see this region's nucleotide sequence