Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22745

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22735 and BWI76_RS22740 are separated by 14 nucleotidesBWI76_RS22740 and BWI76_RS22745 overlap by 4 nucleotidesBWI76_RS22745 and BWI76_RS22750 are separated by 11 nucleotides BWI76_RS22735: BWI76_RS22735 - type I-E CRISPR-associated protein Cas7/Cse4/CasC, at 4,737,105 to 4,738,163 _RS22735 BWI76_RS22740: BWI76_RS22740 - type I-E CRISPR-associated protein Cse2/CasB, at 4,738,178 to 4,738,729 _RS22740 BWI76_RS22745: BWI76_RS22745 - type I-E CRISPR-associated protein Cse1/CasA, at 4,738,726 to 4,740,285 _RS22745 BWI76_RS22750: BWI76_RS22750 - CRISPR-associated helicase/endonuclease Cas3, at 4,740,297 to 4,742,957 _RS22750 Position (kb) 4738 4739 4740 4741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4737.806 kb on - strand, within BWI76_RS22735at 4737.956 kb on + strand, within BWI76_RS22735at 4738.074 kb on - strandat 4738.243 kb on - strand, within BWI76_RS22740at 4738.264 kb on + strand, within BWI76_RS22740at 4738.359 kb on + strand, within BWI76_RS22740at 4738.359 kb on + strand, within BWI76_RS22740at 4738.367 kb on - strand, within BWI76_RS22740at 4738.367 kb on - strand, within BWI76_RS22740at 4738.431 kb on - strand, within BWI76_RS22740at 4738.494 kb on + strand, within BWI76_RS22740at 4738.549 kb on + strand, within BWI76_RS22740at 4738.701 kb on + strandat 4738.704 kb on - strandat 4738.846 kb on - strandat 4738.853 kb on + strandat 4739.070 kb on + strand, within BWI76_RS22745at 4739.070 kb on + strand, within BWI76_RS22745at 4739.070 kb on + strand, within BWI76_RS22745at 4739.070 kb on + strandat 4739.070 kb on + strand, within BWI76_RS22745at 4739.070 kb on + strand, within BWI76_RS22745at 4739.070 kb on + strand, within BWI76_RS22745at 4739.078 kb on - strand, within BWI76_RS22745at 4739.078 kb on - strand, within BWI76_RS22745at 4739.078 kb on - strandat 4739.078 kb on - strand, within BWI76_RS22745at 4739.078 kb on - strand, within BWI76_RS22745at 4739.159 kb on - strand, within BWI76_RS22745at 4739.431 kb on - strand, within BWI76_RS22745at 4739.490 kb on - strand, within BWI76_RS22745at 4739.540 kb on - strand, within BWI76_RS22745at 4739.550 kb on - strand, within BWI76_RS22745at 4739.585 kb on + strand, within BWI76_RS22745at 4739.593 kb on - strand, within BWI76_RS22745at 4739.593 kb on - strand, within BWI76_RS22745at 4739.598 kb on - strand, within BWI76_RS22745at 4739.641 kb on - strand, within BWI76_RS22745at 4739.663 kb on + strand, within BWI76_RS22745at 4739.671 kb on - strand, within BWI76_RS22745at 4739.763 kb on - strand, within BWI76_RS22745at 4739.795 kb on - strand, within BWI76_RS22745at 4739.806 kb on - strand, within BWI76_RS22745at 4739.913 kb on + strand, within BWI76_RS22745at 4740.056 kb on - strand, within BWI76_RS22745at 4740.056 kb on - strand, within BWI76_RS22745at 4740.056 kb on - strand, within BWI76_RS22745at 4740.115 kb on - strand, within BWI76_RS22745at 4740.127 kb on - strand, within BWI76_RS22745at 4740.151 kb on + strandat 4740.159 kb on - strandat 4740.416 kb on - strandat 4740.476 kb on - strandat 4740.476 kb on - strandat 4740.476 kb on - strandat 4740.509 kb on + strandat 4740.509 kb on + strandat 4740.523 kb on + strandat 4740.617 kb on + strand, within BWI76_RS22750at 4740.814 kb on - strand, within BWI76_RS22750at 4740.858 kb on + strand, within BWI76_RS22750at 4740.918 kb on + strand, within BWI76_RS22750at 4741.093 kb on - strand, within BWI76_RS22750at 4741.096 kb on + strand, within BWI76_RS22750at 4741.103 kb on - strandat 4741.220 kb on + strand, within BWI76_RS22750at 4741.220 kb on + strand, within BWI76_RS22750at 4741.220 kb on + strand, within BWI76_RS22750at 4741.226 kb on - strand, within BWI76_RS22750at 4741.228 kb on - strand, within BWI76_RS22750at 4741.228 kb on - strand, within BWI76_RS22750at 4741.233 kb on + strand, within BWI76_RS22750at 4741.241 kb on - strand, within BWI76_RS22750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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4,737,806 - BWI76_RS22735 0.66 -0.1
4,737,956 + BWI76_RS22735 0.80 +0.2
4,738,074 - -0.0
4,738,243 - BWI76_RS22740 0.12 -0.3
4,738,264 + BWI76_RS22740 0.16 -0.4
4,738,359 + BWI76_RS22740 0.33 +0.8
4,738,359 + BWI76_RS22740 0.33 -0.2
4,738,367 - BWI76_RS22740 0.34 +0.2
4,738,367 - BWI76_RS22740 0.34 +0.0
4,738,431 - BWI76_RS22740 0.46 -0.4
4,738,494 + BWI76_RS22740 0.57 +0.0
4,738,549 + BWI76_RS22740 0.67 +0.9
4,738,701 + +0.3
4,738,704 - -0.9
4,738,846 - -0.2
4,738,853 + -0.2
4,739,070 + BWI76_RS22745 0.22 -0.4
4,739,070 + BWI76_RS22745 0.22 -0.6
4,739,070 + BWI76_RS22745 0.22 +0.1
4,739,070 + +0.7
4,739,070 + BWI76_RS22745 0.22 -2.1
4,739,070 + BWI76_RS22745 0.22 -0.1
4,739,070 + BWI76_RS22745 0.22 -2.1
4,739,078 - BWI76_RS22745 0.23 +0.1
4,739,078 - BWI76_RS22745 0.23 -0.2
4,739,078 - +1.7
4,739,078 - BWI76_RS22745 0.23 -0.8
4,739,078 - BWI76_RS22745 0.23 -0.1
4,739,159 - BWI76_RS22745 0.28 +0.1
4,739,431 - BWI76_RS22745 0.45 -0.5
4,739,490 - BWI76_RS22745 0.49 -0.9
4,739,540 - BWI76_RS22745 0.52 +0.4
4,739,550 - BWI76_RS22745 0.53 -0.4
4,739,585 + BWI76_RS22745 0.55 -0.3
4,739,593 - BWI76_RS22745 0.56 -0.8
4,739,593 - BWI76_RS22745 0.56 -1.5
4,739,598 - BWI76_RS22745 0.56 -0.8
4,739,641 - BWI76_RS22745 0.59 -1.5
4,739,663 + BWI76_RS22745 0.60 +0.5
4,739,671 - BWI76_RS22745 0.61 +0.7
4,739,763 - BWI76_RS22745 0.66 +0.1
4,739,795 - BWI76_RS22745 0.69 +0.5
4,739,806 - BWI76_RS22745 0.69 +0.7
4,739,913 + BWI76_RS22745 0.76 +0.4
4,740,056 - BWI76_RS22745 0.85 -1.1
4,740,056 - BWI76_RS22745 0.85 -0.9
4,740,056 - BWI76_RS22745 0.85 -0.2
4,740,115 - BWI76_RS22745 0.89 -0.6
4,740,127 - BWI76_RS22745 0.90 -0.3
4,740,151 + -0.1
4,740,159 - +2.1
4,740,416 - -0.8
4,740,476 - -0.1
4,740,476 - -2.8
4,740,476 - -0.1
4,740,509 + +0.2
4,740,509 + -0.1
4,740,523 + +0.6
4,740,617 + BWI76_RS22750 0.12 -3.5
4,740,814 - BWI76_RS22750 0.19 -0.2
4,740,858 + BWI76_RS22750 0.21 +0.9
4,740,918 + BWI76_RS22750 0.23 +0.4
4,741,093 - BWI76_RS22750 0.30 -0.3
4,741,096 + BWI76_RS22750 0.30 +1.0
4,741,103 - +0.7
4,741,220 + BWI76_RS22750 0.35 -0.8
4,741,220 + BWI76_RS22750 0.35 -0.2
4,741,220 + BWI76_RS22750 0.35 +0.5
4,741,226 - BWI76_RS22750 0.35 +0.1
4,741,228 - BWI76_RS22750 0.35 +0.9
4,741,228 - BWI76_RS22750 0.35 +0.8
4,741,233 + BWI76_RS22750 0.35 +0.9
4,741,241 - BWI76_RS22750 0.35 -1.2

Or see this region's nucleotide sequence