Experiment: L-Sorbose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19490 and BWI76_RS19495 overlap by 17 nucleotides BWI76_RS19495 and BWI76_RS19500 overlap by 8 nucleotides BWI76_RS19500 and BWI76_RS19505 are separated by 7 nucleotides
BWI76_RS19490: BWI76_RS19490 - binding-protein-dependent transport system inner membrane protein, at 4,072,362 to 4,073,099
_RS19490
BWI76_RS19495: BWI76_RS19495 - ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein, at 4,073,083 to 4,074,030
_RS19495
BWI76_RS19500: BWI76_RS19500 - osmoprotectant uptake system permease, at 4,074,023 to 4,075,180
_RS19500
BWI76_RS19505: BWI76_RS19505 - ABC transporter substrate-binding protein, at 4,075,188 to 4,076,105
_RS19505
Position (kb) 4074
4075
4076 Strain fitness (log2 ratio) -2
-1
0
1 at 4073.756 kb on + strand, within BWI76_RS19495 at 4074.047 kb on - strand at 4074.077 kb on + strand at 4074.190 kb on - strand, within BWI76_RS19500 at 4074.236 kb on + strand, within BWI76_RS19500 at 4074.257 kb on + strand, within BWI76_RS19500 at 4074.351 kb on - strand, within BWI76_RS19500 at 4074.369 kb on - strand, within BWI76_RS19500 at 4074.406 kb on + strand at 4074.869 kb on + strand, within BWI76_RS19500 at 4074.892 kb on - strand, within BWI76_RS19500 at 4074.897 kb on - strand, within BWI76_RS19500 at 4075.369 kb on - strand, within BWI76_RS19505 at 4075.594 kb on - strand, within BWI76_RS19505 at 4075.622 kb on + strand, within BWI76_RS19505 at 4075.714 kb on + strand, within BWI76_RS19505 at 4075.907 kb on + strand, within BWI76_RS19505 at 4075.915 kb on - strand, within BWI76_RS19505 at 4075.957 kb on - strand, within BWI76_RS19505
Per-strain Table
Position Strand Gene LocusTag Fraction L-Sorbose (C) remove 4,073,756 + BWI76_RS19495 0.71 -1.5 4,074,047 - +0.2 4,074,077 + -1.0 4,074,190 - BWI76_RS19500 0.14 +1.6 4,074,236 + BWI76_RS19500 0.18 +0.3 4,074,257 + BWI76_RS19500 0.20 -0.4 4,074,351 - BWI76_RS19500 0.28 +0.4 4,074,369 - BWI76_RS19500 0.30 +0.3 4,074,406 + +0.6 4,074,869 + BWI76_RS19500 0.73 +0.8 4,074,892 - BWI76_RS19500 0.75 +0.9 4,074,897 - BWI76_RS19500 0.75 -0.4 4,075,369 - BWI76_RS19505 0.20 -2.6 4,075,594 - BWI76_RS19505 0.44 +0.4 4,075,622 + BWI76_RS19505 0.47 -0.0 4,075,714 + BWI76_RS19505 0.57 -0.2 4,075,907 + BWI76_RS19505 0.78 +0.4 4,075,915 - BWI76_RS19505 0.79 -0.2 4,075,957 - BWI76_RS19505 0.84 -0.3
Or see this region's nucleotide sequence