Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14090

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14080 and BWI76_RS14085 are separated by 16 nucleotidesBWI76_RS14085 and BWI76_RS14090 are separated by 123 nucleotidesBWI76_RS14090 and BWI76_RS14095 are separated by 30 nucleotides BWI76_RS14080: BWI76_RS14080 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,941,617 to 2,944,724 _RS14080 BWI76_RS14085: BWI76_RS14085 - hypothetical protein, at 2,944,741 to 2,945,163 _RS14085 BWI76_RS14090: BWI76_RS14090 - polyketide cyclase, at 2,945,287 to 2,945,740 _RS14090 BWI76_RS14095: BWI76_RS14095 - hypothetical protein, at 2,945,771 to 2,947,096 _RS14095 Position (kb) 2945 2946Strain fitness (log2 ratio) -1 0 1 2at 2944.337 kb on + strand, within BWI76_RS14080at 2944.510 kb on + strandat 2944.734 kb on + strandat 2945.332 kb on + strandat 2945.407 kb on - strand, within BWI76_RS14090at 2945.451 kb on - strand, within BWI76_RS14090at 2945.573 kb on - strand, within BWI76_RS14090at 2945.963 kb on + strand, within BWI76_RS14095at 2945.963 kb on + strand, within BWI76_RS14095at 2945.979 kb on + strand, within BWI76_RS14095at 2945.997 kb on - strand, within BWI76_RS14095at 2946.465 kb on - strand, within BWI76_RS14095at 2946.465 kb on - strand, within BWI76_RS14095at 2946.503 kb on + strand, within BWI76_RS14095at 2946.550 kb on + strand, within BWI76_RS14095at 2946.606 kb on + strand, within BWI76_RS14095at 2946.663 kb on - strand, within BWI76_RS14095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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2,944,337 + BWI76_RS14080 0.88 -0.3
2,944,510 + -0.9
2,944,734 + -1.0
2,945,332 + +0.2
2,945,407 - BWI76_RS14090 0.26 -0.9
2,945,451 - BWI76_RS14090 0.36 -0.5
2,945,573 - BWI76_RS14090 0.63 -1.3
2,945,963 + BWI76_RS14095 0.14 -1.0
2,945,963 + BWI76_RS14095 0.14 +0.8
2,945,979 + BWI76_RS14095 0.16 +1.0
2,945,997 - BWI76_RS14095 0.17 -0.6
2,946,465 - BWI76_RS14095 0.52 +0.3
2,946,465 - BWI76_RS14095 0.52 +0.4
2,946,503 + BWI76_RS14095 0.55 +1.8
2,946,550 + BWI76_RS14095 0.59 +0.5
2,946,606 + BWI76_RS14095 0.63 +0.7
2,946,663 - BWI76_RS14095 0.67 +0.3

Or see this region's nucleotide sequence