Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09705

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09695 and BWI76_RS09700 are separated by 42 nucleotidesBWI76_RS09700 and BWI76_RS09705 are separated by 42 nucleotidesBWI76_RS09705 and BWI76_RS09710 overlap by 1 nucleotidesBWI76_RS09710 and BWI76_RS09715 are separated by 12 nucleotides BWI76_RS09695: BWI76_RS09695 - MFS transporter, at 2,032,899 to 2,034,047 _RS09695 BWI76_RS09700: BWI76_RS09700 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,034,090 to 2,034,527 _RS09700 BWI76_RS09705: BWI76_RS09705 - transketolase, at 2,034,570 to 2,035,481 _RS09705 BWI76_RS09710: BWI76_RS09710 - transketolase, at 2,035,481 to 2,036,278 _RS09710 BWI76_RS09715: BWI76_RS09715 - hypothetical protein, at 2,036,291 to 2,037,556 _RS09715 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -2 -1 0 1at 2033.644 kb on + strand, within BWI76_RS09695at 2033.706 kb on + strand, within BWI76_RS09695at 2033.714 kb on - strand, within BWI76_RS09695at 2033.887 kb on + strand, within BWI76_RS09695at 2034.049 kb on - strandat 2034.370 kb on - strand, within BWI76_RS09700at 2034.588 kb on - strandat 2034.588 kb on - strandat 2034.774 kb on + strand, within BWI76_RS09705at 2035.011 kb on + strand, within BWI76_RS09705at 2035.019 kb on - strand, within BWI76_RS09705at 2035.019 kb on - strand, within BWI76_RS09705at 2035.080 kb on + strand, within BWI76_RS09705at 2035.382 kb on + strand, within BWI76_RS09705at 2035.448 kb on + strandat 2035.605 kb on + strand, within BWI76_RS09710at 2035.965 kb on + strand, within BWI76_RS09710at 2036.065 kb on + strand, within BWI76_RS09710at 2036.263 kb on - strandat 2036.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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2,033,644 + BWI76_RS09695 0.65 +0.0
2,033,706 + BWI76_RS09695 0.70 +1.1
2,033,714 - BWI76_RS09695 0.71 -0.0
2,033,887 + BWI76_RS09695 0.86 -0.5
2,034,049 - -0.8
2,034,370 - BWI76_RS09700 0.64 -0.2
2,034,588 - +0.7
2,034,588 - +0.2
2,034,774 + BWI76_RS09705 0.22 -1.1
2,035,011 + BWI76_RS09705 0.48 -1.1
2,035,019 - BWI76_RS09705 0.49 -1.6
2,035,019 - BWI76_RS09705 0.49 +0.2
2,035,080 + BWI76_RS09705 0.56 -0.5
2,035,382 + BWI76_RS09705 0.89 -1.8
2,035,448 + +0.1
2,035,605 + BWI76_RS09710 0.16 -0.2
2,035,965 + BWI76_RS09710 0.61 -0.9
2,036,065 + BWI76_RS09710 0.73 +0.4
2,036,263 - +0.1
2,036,407 + -1.2

Or see this region's nucleotide sequence