Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07895

Experiment: L-Sorbose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07885 and BWI76_RS07890 overlap by 1 nucleotidesBWI76_RS07890 and BWI76_RS07895 overlap by 4 nucleotidesBWI76_RS07895 and BWI76_RS07900 overlap by 4 nucleotides BWI76_RS07885: BWI76_RS07885 - sugar ABC transporter permease, at 1,673,543 to 1,674,544 _RS07885 BWI76_RS07890: BWI76_RS07890 - putative ABC-type sugar transport system permease component, at 1,674,544 to 1,675,530 _RS07890 BWI76_RS07895: BWI76_RS07895 - sugar ABC transporter ATPase, at 1,675,527 to 1,677,080 _RS07895 BWI76_RS07900: BWI76_RS07900 - sugar ABC transporter substrate-binding protein, at 1,677,077 to 1,678,057 _RS07900 Position (kb) 1675 1676 1677 1678Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1674.667 kb on + strand, within BWI76_RS07890at 1674.667 kb on + strand, within BWI76_RS07890at 1674.667 kb on + strand, within BWI76_RS07890at 1674.675 kb on - strand, within BWI76_RS07890at 1674.675 kb on - strand, within BWI76_RS07890at 1674.897 kb on - strandat 1675.166 kb on - strand, within BWI76_RS07890at 1675.234 kb on - strand, within BWI76_RS07890at 1675.280 kb on - strand, within BWI76_RS07890at 1675.309 kb on + strand, within BWI76_RS07890at 1675.347 kb on + strand, within BWI76_RS07890at 1675.355 kb on - strand, within BWI76_RS07890at 1675.431 kb on + strand, within BWI76_RS07890at 1676.047 kb on - strand, within BWI76_RS07895at 1676.302 kb on + strand, within BWI76_RS07895at 1676.310 kb on - strand, within BWI76_RS07895at 1676.310 kb on - strand, within BWI76_RS07895at 1676.320 kb on - strand, within BWI76_RS07895at 1676.973 kb on - strandat 1677.159 kb on - strandat 1677.341 kb on - strand, within BWI76_RS07900at 1677.363 kb on - strand, within BWI76_RS07900at 1677.376 kb on + strand, within BWI76_RS07900at 1677.384 kb on - strand, within BWI76_RS07900at 1677.394 kb on - strand, within BWI76_RS07900at 1677.404 kb on + strand, within BWI76_RS07900at 1677.407 kb on - strand, within BWI76_RS07900at 1677.412 kb on - strand, within BWI76_RS07900at 1677.418 kb on + strand, within BWI76_RS07900at 1677.419 kb on + strand, within BWI76_RS07900at 1677.423 kb on + strand, within BWI76_RS07900at 1677.425 kb on + strand, within BWI76_RS07900at 1677.431 kb on - strand, within BWI76_RS07900at 1677.433 kb on + strand, within BWI76_RS07900at 1677.433 kb on + strand, within BWI76_RS07900at 1677.433 kb on - strand, within BWI76_RS07900at 1677.441 kb on - strand, within BWI76_RS07900at 1677.441 kb on - strand, within BWI76_RS07900at 1677.449 kb on - strand, within BWI76_RS07900at 1677.465 kb on - strand, within BWI76_RS07900at 1677.467 kb on - strand, within BWI76_RS07900at 1677.476 kb on + strand, within BWI76_RS07900at 1677.478 kb on + strand, within BWI76_RS07900at 1677.484 kb on - strand, within BWI76_RS07900at 1677.485 kb on - strand, within BWI76_RS07900at 1677.495 kb on - strand, within BWI76_RS07900at 1677.531 kb on + strand, within BWI76_RS07900at 1677.549 kb on - strand, within BWI76_RS07900at 1677.590 kb on - strand, within BWI76_RS07900at 1677.614 kb on + strand, within BWI76_RS07900at 1677.632 kb on - strand, within BWI76_RS07900at 1677.632 kb on - strand, within BWI76_RS07900at 1677.643 kb on - strand, within BWI76_RS07900at 1677.646 kb on + strand, within BWI76_RS07900at 1677.646 kb on + strand, within BWI76_RS07900at 1677.654 kb on + strand, within BWI76_RS07900at 1677.654 kb on - strand, within BWI76_RS07900at 1677.654 kb on - strand, within BWI76_RS07900at 1677.654 kb on - strand, within BWI76_RS07900at 1677.655 kb on - strand, within BWI76_RS07900at 1677.662 kb on - strand, within BWI76_RS07900at 1677.662 kb on - strand, within BWI76_RS07900at 1677.669 kb on - strand, within BWI76_RS07900at 1677.674 kb on - strand, within BWI76_RS07900at 1677.792 kb on + strand, within BWI76_RS07900at 1677.800 kb on - strand, within BWI76_RS07900at 1677.801 kb on - strandat 1677.830 kb on + strand, within BWI76_RS07900at 1677.830 kb on + strand, within BWI76_RS07900at 1677.858 kb on - strand, within BWI76_RS07900at 1677.858 kb on - strand, within BWI76_RS07900at 1677.893 kb on + strand, within BWI76_RS07900at 1677.894 kb on + strand, within BWI76_RS07900at 1677.894 kb on + strand, within BWI76_RS07900at 1677.900 kb on + strand, within BWI76_RS07900at 1677.900 kb on + strand, within BWI76_RS07900at 1677.900 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on + strand, within BWI76_RS07900at 1677.902 kb on - strand, within BWI76_RS07900at 1677.908 kb on + strand, within BWI76_RS07900at 1677.908 kb on + strand, within BWI76_RS07900at 1677.908 kb on - strand, within BWI76_RS07900at 1677.908 kb on - strand, within BWI76_RS07900at 1677.910 kb on - strand, within BWI76_RS07900at 1677.910 kb on - strand, within BWI76_RS07900at 1677.910 kb on - strand, within BWI76_RS07900at 1677.910 kb on - strandat 1677.910 kb on - strand, within BWI76_RS07900at 1677.910 kb on - strand, within BWI76_RS07900at 1677.910 kb on - strand, within BWI76_RS07900at 1677.918 kb on + strand, within BWI76_RS07900at 1677.918 kb on + strand, within BWI76_RS07900at 1677.921 kb on + strand, within BWI76_RS07900at 1677.921 kb on + strand, within BWI76_RS07900at 1677.926 kb on - strand, within BWI76_RS07900at 1677.926 kb on - strand, within BWI76_RS07900at 1677.926 kb on - strand, within BWI76_RS07900at 1677.926 kb on - strand, within BWI76_RS07900at 1677.936 kb on - strand, within BWI76_RS07900at 1677.936 kb on - strand, within BWI76_RS07900at 1677.938 kb on + strand, within BWI76_RS07900at 1677.951 kb on - strand, within BWI76_RS07900at 1677.971 kb on + strandat 1677.980 kb on - strandat 1677.986 kb on + strandat 1677.993 kb on + strandat 1677.994 kb on + strandat 1678.001 kb on - strandat 1678.001 kb on - strandat 1678.002 kb on - strandat 1678.004 kb on + strandat 1678.008 kb on + strandat 1678.016 kb on - strandat 1678.018 kb on + strandat 1678.018 kb on + strandat 1678.018 kb on + strandat 1678.018 kb on + strandat 1678.026 kb on - strandat 1678.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Sorbose (C)
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1,674,667 + BWI76_RS07890 0.12 +0.3
1,674,667 + BWI76_RS07890 0.12 -0.1
1,674,667 + BWI76_RS07890 0.12 -0.9
1,674,675 - BWI76_RS07890 0.13 -0.6
1,674,675 - BWI76_RS07890 0.13 -1.1
1,674,897 - -0.6
1,675,166 - BWI76_RS07890 0.63 -0.1
1,675,234 - BWI76_RS07890 0.70 +0.1
1,675,280 - BWI76_RS07890 0.75 +0.4
1,675,309 + BWI76_RS07890 0.78 -0.3
1,675,347 + BWI76_RS07890 0.81 +0.4
1,675,355 - BWI76_RS07890 0.82 -0.3
1,675,431 + BWI76_RS07890 0.90 -0.5
1,676,047 - BWI76_RS07895 0.33 +1.0
1,676,302 + BWI76_RS07895 0.50 +1.3
1,676,310 - BWI76_RS07895 0.50 +0.8
1,676,310 - BWI76_RS07895 0.50 +1.3
1,676,320 - BWI76_RS07895 0.51 -0.4
1,676,973 - +0.3
1,677,159 - +0.3
1,677,341 - BWI76_RS07900 0.27 +0.1
1,677,363 - BWI76_RS07900 0.29 -2.0
1,677,376 + BWI76_RS07900 0.30 -0.4
1,677,384 - BWI76_RS07900 0.31 -0.5
1,677,394 - BWI76_RS07900 0.32 +0.0
1,677,404 + BWI76_RS07900 0.33 -0.2
1,677,407 - BWI76_RS07900 0.34 -0.1
1,677,412 - BWI76_RS07900 0.34 -0.1
1,677,418 + BWI76_RS07900 0.35 +2.3
1,677,419 + BWI76_RS07900 0.35 +1.3
1,677,423 + BWI76_RS07900 0.35 +0.6
1,677,425 + BWI76_RS07900 0.35 +1.7
1,677,431 - BWI76_RS07900 0.36 +0.1
1,677,433 + BWI76_RS07900 0.36 -1.5
1,677,433 + BWI76_RS07900 0.36 -0.2
1,677,433 - BWI76_RS07900 0.36 -1.2
1,677,441 - BWI76_RS07900 0.37 +0.7
1,677,441 - BWI76_RS07900 0.37 +0.2
1,677,449 - BWI76_RS07900 0.38 +0.2
1,677,465 - BWI76_RS07900 0.40 +0.2
1,677,467 - BWI76_RS07900 0.40 -1.5
1,677,476 + BWI76_RS07900 0.41 +1.5
1,677,478 + BWI76_RS07900 0.41 -0.2
1,677,484 - BWI76_RS07900 0.41 -0.3
1,677,485 - BWI76_RS07900 0.42 -0.7
1,677,495 - BWI76_RS07900 0.43 -0.3
1,677,531 + BWI76_RS07900 0.46 -0.3
1,677,549 - BWI76_RS07900 0.48 +0.5
1,677,590 - BWI76_RS07900 0.52 +0.2
1,677,614 + BWI76_RS07900 0.55 -0.5
1,677,632 - BWI76_RS07900 0.57 -0.1
1,677,632 - BWI76_RS07900 0.57 +0.6
1,677,643 - BWI76_RS07900 0.58 +0.6
1,677,646 + BWI76_RS07900 0.58 +2.1
1,677,646 + BWI76_RS07900 0.58 +0.1
1,677,654 + BWI76_RS07900 0.59 +1.9
1,677,654 - BWI76_RS07900 0.59 +0.8
1,677,654 - BWI76_RS07900 0.59 +0.6
1,677,654 - BWI76_RS07900 0.59 -0.1
1,677,655 - BWI76_RS07900 0.59 +0.6
1,677,662 - BWI76_RS07900 0.60 +0.5
1,677,662 - BWI76_RS07900 0.60 +0.5
1,677,669 - BWI76_RS07900 0.60 -0.2
1,677,674 - BWI76_RS07900 0.61 +0.1
1,677,792 + BWI76_RS07900 0.73 -1.1
1,677,800 - BWI76_RS07900 0.74 -0.4
1,677,801 - +2.3
1,677,830 + BWI76_RS07900 0.77 +0.4
1,677,830 + BWI76_RS07900 0.77 +0.2
1,677,858 - BWI76_RS07900 0.80 -1.7
1,677,858 - BWI76_RS07900 0.80 +0.9
1,677,893 + BWI76_RS07900 0.83 +2.0
1,677,894 + BWI76_RS07900 0.83 -0.1
1,677,894 + BWI76_RS07900 0.83 -0.4
1,677,900 + BWI76_RS07900 0.84 -0.4
1,677,900 + BWI76_RS07900 0.84 +1.0
1,677,900 + BWI76_RS07900 0.84 +0.5
1,677,902 + BWI76_RS07900 0.84 -0.9
1,677,902 + BWI76_RS07900 0.84 +0.9
1,677,902 + BWI76_RS07900 0.84 -0.3
1,677,902 + BWI76_RS07900 0.84 -0.5
1,677,902 + BWI76_RS07900 0.84 +0.6
1,677,902 + BWI76_RS07900 0.84 +0.4
1,677,902 + BWI76_RS07900 0.84 -0.5
1,677,902 + BWI76_RS07900 0.84 -0.2
1,677,902 - BWI76_RS07900 0.84 -1.9
1,677,908 + BWI76_RS07900 0.85 +0.2
1,677,908 + BWI76_RS07900 0.85 +0.1
1,677,908 - BWI76_RS07900 0.85 -1.2
1,677,908 - BWI76_RS07900 0.85 +0.5
1,677,910 - BWI76_RS07900 0.85 -0.1
1,677,910 - BWI76_RS07900 0.85 +2.0
1,677,910 - BWI76_RS07900 0.85 -0.1
1,677,910 - +1.7
1,677,910 - BWI76_RS07900 0.85 -1.8
1,677,910 - BWI76_RS07900 0.85 +1.4
1,677,910 - BWI76_RS07900 0.85 +0.4
1,677,918 + BWI76_RS07900 0.86 -0.6
1,677,918 + BWI76_RS07900 0.86 +1.2
1,677,921 + BWI76_RS07900 0.86 +1.1
1,677,921 + BWI76_RS07900 0.86 -0.8
1,677,926 - BWI76_RS07900 0.87 -0.5
1,677,926 - BWI76_RS07900 0.87 +0.7
1,677,926 - BWI76_RS07900 0.87 +0.1
1,677,926 - BWI76_RS07900 0.87 -2.0
1,677,936 - BWI76_RS07900 0.88 -1.6
1,677,936 - BWI76_RS07900 0.88 +0.0
1,677,938 + BWI76_RS07900 0.88 +0.7
1,677,951 - BWI76_RS07900 0.89 -2.0
1,677,971 + -3.7
1,677,980 - +1.5
1,677,986 + -0.2
1,677,993 + -2.7
1,677,994 + -0.2
1,678,001 - +0.2
1,678,001 - -0.5
1,678,002 - -1.5
1,678,004 + +0.9
1,678,008 + +0.1
1,678,016 - +0.7
1,678,018 + +0.4
1,678,018 + -1.1
1,678,018 + -2.3
1,678,018 + -0.2
1,678,026 - -0.8
1,678,067 - +0.7

Or see this region's nucleotide sequence