Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19000

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18995 and AO353_19000 overlap by 1 nucleotidesAO353_19000 and AO353_19005 are separated by 10 nucleotidesAO353_19005 and AO353_19010 are separated by 58 nucleotides AO353_18995: AO353_18995 - ABC transporter permease, at 4,172,633 to 4,175,137 _18995 AO353_19000: AO353_19000 - ABC transporter, at 4,175,137 to 4,175,823 _19000 AO353_19005: AO353_19005 - esterase, at 4,175,834 to 4,176,439 _19005 AO353_19010: AO353_19010 - hypothetical protein, at 4,176,498 to 4,176,791 _19010 Position (kb) 4175 4176Strain fitness (log2 ratio) -2 -1 0 1 2at 4174.193 kb on + strand, within AO353_18995at 4174.193 kb on + strand, within AO353_18995at 4174.194 kb on - strand, within AO353_18995at 4174.205 kb on + strand, within AO353_18995at 4174.205 kb on + strand, within AO353_18995at 4174.205 kb on + strand, within AO353_18995at 4174.205 kb on + strand, within AO353_18995at 4174.206 kb on - strand, within AO353_18995at 4174.206 kb on - strand, within AO353_18995at 4174.206 kb on - strand, within AO353_18995at 4174.356 kb on + strand, within AO353_18995at 4174.356 kb on + strandat 4174.356 kb on + strand, within AO353_18995at 4174.357 kb on - strand, within AO353_18995at 4174.357 kb on - strand, within AO353_18995at 4174.500 kb on + strand, within AO353_18995at 4174.500 kb on + strand, within AO353_18995at 4174.500 kb on + strand, within AO353_18995at 4174.501 kb on - strand, within AO353_18995at 4174.501 kb on - strand, within AO353_18995at 4174.581 kb on + strand, within AO353_18995at 4174.582 kb on - strand, within AO353_18995at 4174.608 kb on + strand, within AO353_18995at 4174.608 kb on + strand, within AO353_18995at 4174.608 kb on + strandat 4174.608 kb on + strand, within AO353_18995at 4174.608 kb on + strand, within AO353_18995at 4174.608 kb on + strand, within AO353_18995at 4174.609 kb on - strand, within AO353_18995at 4174.609 kb on - strand, within AO353_18995at 4174.609 kb on - strand, within AO353_18995at 4174.609 kb on - strand, within AO353_18995at 4174.781 kb on + strand, within AO353_18995at 4174.788 kb on + strand, within AO353_18995at 4174.788 kb on + strand, within AO353_18995at 4174.789 kb on - strand, within AO353_18995at 4174.789 kb on - strand, within AO353_18995at 4174.789 kb on - strand, within AO353_18995at 4175.004 kb on + strandat 4175.005 kb on - strandat 4175.164 kb on + strandat 4175.165 kb on - strandat 4175.254 kb on - strand, within AO353_19000at 4175.292 kb on + strand, within AO353_19000at 4175.292 kb on + strand, within AO353_19000at 4175.292 kb on + strand, within AO353_19000at 4175.293 kb on - strand, within AO353_19000at 4175.314 kb on - strand, within AO353_19000at 4175.790 kb on + strandat 4175.791 kb on - strandat 4175.899 kb on + strand, within AO353_19005at 4175.899 kb on + strand, within AO353_19005at 4175.920 kb on + strand, within AO353_19005at 4175.920 kb on + strand, within AO353_19005at 4175.921 kb on - strand, within AO353_19005at 4175.923 kb on + strand, within AO353_19005at 4175.923 kb on + strand, within AO353_19005at 4175.923 kb on + strand, within AO353_19005at 4175.924 kb on - strand, within AO353_19005at 4175.924 kb on - strand, within AO353_19005at 4176.085 kb on + strandat 4176.085 kb on + strand, within AO353_19005at 4176.085 kb on + strand, within AO353_19005at 4176.085 kb on + strand, within AO353_19005at 4176.085 kb on + strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.086 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.240 kb on - strand, within AO353_19005at 4176.275 kb on + strand, within AO353_19005at 4176.275 kb on + strand, within AO353_19005at 4176.276 kb on - strand, within AO353_19005at 4176.276 kb on - strand, within AO353_19005at 4176.276 kb on - strand, within AO353_19005at 4176.418 kb on + strandat 4176.418 kb on + strandat 4176.418 kb on + strandat 4176.424 kb on - strandat 4176.424 kb on - strandat 4176.424 kb on - strandat 4176.435 kb on + strandat 4176.436 kb on - strandat 4176.449 kb on - strandat 4176.789 kb on + strandat 4176.790 kb on - strandat 4176.790 kb on - strandat 4176.805 kb on + strandat 4176.806 kb on - strandat 4176.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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4,174,193 + AO353_18995 0.62 -0.0
4,174,193 + AO353_18995 0.62 +1.4
4,174,194 - AO353_18995 0.62 +0.5
4,174,205 + AO353_18995 0.63 +0.2
4,174,205 + AO353_18995 0.63 +0.3
4,174,205 + AO353_18995 0.63 -0.4
4,174,205 + AO353_18995 0.63 +0.9
4,174,206 - AO353_18995 0.63 +0.4
4,174,206 - AO353_18995 0.63 -0.6
4,174,206 - AO353_18995 0.63 -2.5
4,174,356 + AO353_18995 0.69 +0.2
4,174,356 + -0.9
4,174,356 + AO353_18995 0.69 +0.9
4,174,357 - AO353_18995 0.69 +1.1
4,174,357 - AO353_18995 0.69 -0.6
4,174,500 + AO353_18995 0.75 -0.8
4,174,500 + AO353_18995 0.75 -0.3
4,174,500 + AO353_18995 0.75 +0.3
4,174,501 - AO353_18995 0.75 -0.7
4,174,501 - AO353_18995 0.75 +0.6
4,174,581 + AO353_18995 0.78 +1.0
4,174,582 - AO353_18995 0.78 +1.0
4,174,608 + AO353_18995 0.79 +0.6
4,174,608 + AO353_18995 0.79 -0.2
4,174,608 + -1.1
4,174,608 + AO353_18995 0.79 -0.1
4,174,608 + AO353_18995 0.79 -0.5
4,174,608 + AO353_18995 0.79 +0.9
4,174,609 - AO353_18995 0.79 -1.8
4,174,609 - AO353_18995 0.79 +0.6
4,174,609 - AO353_18995 0.79 -1.1
4,174,609 - AO353_18995 0.79 -0.1
4,174,781 + AO353_18995 0.86 -0.7
4,174,788 + AO353_18995 0.86 +0.3
4,174,788 + AO353_18995 0.86 +0.5
4,174,789 - AO353_18995 0.86 +0.5
4,174,789 - AO353_18995 0.86 +0.4
4,174,789 - AO353_18995 0.86 -0.8
4,175,004 + +0.4
4,175,005 - -0.5
4,175,164 + +0.1
4,175,165 - -0.6
4,175,254 - AO353_19000 0.17 -1.1
4,175,292 + AO353_19000 0.23 -1.1
4,175,292 + AO353_19000 0.23 -0.9
4,175,292 + AO353_19000 0.23 -2.1
4,175,293 - AO353_19000 0.23 +0.1
4,175,314 - AO353_19000 0.26 -0.2
4,175,790 + -0.1
4,175,791 - -0.1
4,175,899 + AO353_19005 0.11 +0.6
4,175,899 + AO353_19005 0.11 -1.2
4,175,920 + AO353_19005 0.14 -0.5
4,175,920 + AO353_19005 0.14 -0.8
4,175,921 - AO353_19005 0.14 -0.3
4,175,923 + AO353_19005 0.15 +1.1
4,175,923 + AO353_19005 0.15 +0.5
4,175,923 + AO353_19005 0.15 -0.6
4,175,924 - AO353_19005 0.15 -0.3
4,175,924 - AO353_19005 0.15 -1.1
4,176,085 + +0.5
4,176,085 + AO353_19005 0.41 +0.3
4,176,085 + AO353_19005 0.41 -1.3
4,176,085 + AO353_19005 0.41 -0.6
4,176,085 + AO353_19005 0.41 -0.1
4,176,086 - AO353_19005 0.42 -0.3
4,176,086 - AO353_19005 0.42 -2.0
4,176,086 - AO353_19005 0.42 -1.6
4,176,086 - AO353_19005 0.42 -0.1
4,176,086 - AO353_19005 0.42 -1.2
4,176,240 - AO353_19005 0.67 -0.6
4,176,240 - AO353_19005 0.67 +1.5
4,176,240 - AO353_19005 0.67 -0.3
4,176,240 - AO353_19005 0.67 -1.0
4,176,240 - AO353_19005 0.67 +0.1
4,176,275 + AO353_19005 0.73 +1.2
4,176,275 + AO353_19005 0.73 -0.6
4,176,276 - AO353_19005 0.73 -0.0
4,176,276 - AO353_19005 0.73 +1.9
4,176,276 - AO353_19005 0.73 -0.1
4,176,418 + +0.1
4,176,418 + -0.0
4,176,418 + -1.1
4,176,424 - -0.1
4,176,424 - -0.1
4,176,424 - +0.2
4,176,435 + +1.5
4,176,436 - +0.9
4,176,449 - +1.9
4,176,789 + +0.9
4,176,790 - +0.3
4,176,790 - -0.2
4,176,805 + -0.4
4,176,806 - +1.0
4,176,806 - +0.5

Or see this region's nucleotide sequence