Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18410

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18405 and AO353_18410 are separated by 12 nucleotidesAO353_18410 and AO353_18415 are separated by 52 nucleotides AO353_18405: AO353_18405 - LysR family transcriptional regulator, at 4,054,480 to 4,055,373 _18405 AO353_18410: AO353_18410 - hypothetical protein, at 4,055,386 to 4,055,985 _18410 AO353_18415: AO353_18415 - hypothetical protein, at 4,056,038 to 4,057,978 _18415 Position (kb) 4055 4056Strain fitness (log2 ratio) -2 -1 0 1 2at 4054.403 kb on + strandat 4054.403 kb on + strandat 4054.403 kb on + strandat 4054.407 kb on + strandat 4054.407 kb on + strandat 4054.407 kb on + strandat 4054.408 kb on - strandat 4054.408 kb on - strandat 4054.427 kb on + strandat 4054.445 kb on + strandat 4054.446 kb on - strandat 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.597 kb on + strand, within AO353_18405at 4054.598 kb on - strand, within AO353_18405at 4054.598 kb on - strand, within AO353_18405at 4054.598 kb on - strand, within AO353_18405at 4054.598 kb on - strand, within AO353_18405at 4054.598 kb on - strand, within AO353_18405at 4054.598 kb on - strand, within AO353_18405at 4054.735 kb on + strand, within AO353_18405at 4054.736 kb on - strand, within AO353_18405at 4054.736 kb on - strand, within AO353_18405at 4054.736 kb on - strand, within AO353_18405at 4054.840 kb on + strand, within AO353_18405at 4054.841 kb on - strand, within AO353_18405at 4054.972 kb on + strand, within AO353_18405at 4054.972 kb on + strand, within AO353_18405at 4054.972 kb on + strand, within AO353_18405at 4054.972 kb on + strand, within AO353_18405at 4054.972 kb on + strand, within AO353_18405at 4054.973 kb on - strand, within AO353_18405at 4054.973 kb on - strand, within AO353_18405at 4054.973 kb on - strand, within AO353_18405at 4055.005 kb on + strand, within AO353_18405at 4055.005 kb on + strand, within AO353_18405at 4055.005 kb on + strand, within AO353_18405at 4055.005 kb on + strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.006 kb on - strand, within AO353_18405at 4055.151 kb on + strand, within AO353_18405at 4055.152 kb on - strand, within AO353_18405at 4055.188 kb on + strand, within AO353_18405at 4055.188 kb on + strand, within AO353_18405at 4055.188 kb on + strand, within AO353_18405at 4055.188 kb on + strand, within AO353_18405at 4055.189 kb on - strand, within AO353_18405at 4055.189 kb on - strand, within AO353_18405at 4055.189 kb on - strand, within AO353_18405at 4055.212 kb on + strand, within AO353_18405at 4055.212 kb on + strand, within AO353_18405at 4055.212 kb on + strand, within AO353_18405at 4055.212 kb on + strand, within AO353_18405at 4055.213 kb on - strand, within AO353_18405at 4055.385 kb on + strandat 4055.385 kb on + strandat 4055.385 kb on + strandat 4055.385 kb on + strandat 4055.385 kb on + strandat 4055.662 kb on + strand, within AO353_18410at 4055.662 kb on + strand, within AO353_18410at 4055.662 kb on + strand, within AO353_18410at 4055.663 kb on - strand, within AO353_18410at 4055.663 kb on - strand, within AO353_18410at 4055.663 kb on - strand, within AO353_18410at 4055.664 kb on + strand, within AO353_18410at 4055.664 kb on + strand, within AO353_18410at 4055.664 kb on + strand, within AO353_18410at 4055.665 kb on - strand, within AO353_18410at 4055.665 kb on - strand, within AO353_18410at 4055.897 kb on + strand, within AO353_18410at 4055.956 kb on + strandat 4055.956 kb on + strandat 4055.956 kb on + strandat 4055.956 kb on + strandat 4055.956 kb on + strandat 4055.964 kb on + strandat 4055.965 kb on - strandat 4055.965 kb on - strandat 4055.965 kb on - strandat 4055.983 kb on + strandat 4055.983 kb on + strandat 4055.984 kb on - strandat 4055.984 kb on - strandat 4056.007 kb on + strandat 4056.007 kb on + strandat 4056.007 kb on + strandat 4056.007 kb on + strandat 4056.008 kb on - strandat 4056.026 kb on + strandat 4056.036 kb on + strandat 4056.036 kb on + strandat 4056.036 kb on + strandat 4056.036 kb on + strandat 4056.036 kb on + strandat 4056.037 kb on - strandat 4056.037 kb on - strandat 4056.037 kb on - strandat 4056.037 kb on - strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.039 kb on + strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.040 kb on - strandat 4056.125 kb on + strandat 4056.125 kb on + strandat 4056.126 kb on - strandat 4056.126 kb on - strandat 4056.126 kb on - strandat 4056.225 kb on + strandat 4056.225 kb on + strandat 4056.225 kb on + strandat 4056.225 kb on + strandat 4056.225 kb on + strandat 4056.225 kb on + strandat 4056.226 kb on - strandat 4056.226 kb on - strandat 4056.226 kb on - strandat 4056.226 kb on - strandat 4056.473 kb on - strand, within AO353_18415at 4056.473 kb on - strand, within AO353_18415at 4056.487 kb on + strand, within AO353_18415at 4056.488 kb on - strand, within AO353_18415at 4056.488 kb on - strand, within AO353_18415at 4056.488 kb on - strand, within AO353_18415at 4056.488 kb on - strand, within AO353_18415at 4056.519 kb on + strand, within AO353_18415at 4056.520 kb on - strand, within AO353_18415at 4056.578 kb on + strand, within AO353_18415at 4056.579 kb on - strand, within AO353_18415at 4056.579 kb on - strand, within AO353_18415at 4056.579 kb on - strand, within AO353_18415at 4056.579 kb on - strand, within AO353_18415at 4056.579 kb on - strand, within AO353_18415at 4056.696 kb on + strand, within AO353_18415at 4056.696 kb on + strand, within AO353_18415at 4056.696 kb on + strand, within AO353_18415at 4056.697 kb on - strand, within AO353_18415at 4056.697 kb on - strand, within AO353_18415at 4056.697 kb on - strand, within AO353_18415at 4056.697 kb on - strand, within AO353_18415at 4056.697 kb on - strand, within AO353_18415at 4056.697 kb on - strand, within AO353_18415at 4056.757 kb on + strand, within AO353_18415at 4056.757 kb on + strand, within AO353_18415at 4056.758 kb on - strand, within AO353_18415at 4056.758 kb on - strand, within AO353_18415at 4056.879 kb on + strand, within AO353_18415at 4056.879 kb on + strand, within AO353_18415

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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4,054,403 + -0.3
4,054,403 + -0.3
4,054,403 + +0.1
4,054,407 + -0.1
4,054,407 + +0.2
4,054,407 + +0.9
4,054,408 - +1.9
4,054,408 - -1.1
4,054,427 + -1.4
4,054,445 + -0.4
4,054,446 - -0.1
4,054,597 + AO353_18405 0.13 -0.1
4,054,597 + AO353_18405 0.13 -0.2
4,054,597 + AO353_18405 0.13 +0.1
4,054,597 + AO353_18405 0.13 -0.1
4,054,597 + AO353_18405 0.13 -0.1
4,054,597 + AO353_18405 0.13 +0.3
4,054,597 + AO353_18405 0.13 -0.2
4,054,597 + AO353_18405 0.13 -1.7
4,054,597 + AO353_18405 0.13 -0.3
4,054,597 + AO353_18405 0.13 -0.6
4,054,598 - AO353_18405 0.13 -0.2
4,054,598 - AO353_18405 0.13 -2.3
4,054,598 - AO353_18405 0.13 -0.4
4,054,598 - AO353_18405 0.13 -0.3
4,054,598 - AO353_18405 0.13 +0.4
4,054,598 - AO353_18405 0.13 -1.9
4,054,735 + AO353_18405 0.29 +0.2
4,054,736 - AO353_18405 0.29 +0.4
4,054,736 - AO353_18405 0.29 +0.7
4,054,736 - AO353_18405 0.29 +0.5
4,054,840 + AO353_18405 0.40 +0.4
4,054,841 - AO353_18405 0.40 +0.2
4,054,972 + AO353_18405 0.55 +0.3
4,054,972 + AO353_18405 0.55 -0.0
4,054,972 + AO353_18405 0.55 +0.3
4,054,972 + AO353_18405 0.55 -0.1
4,054,972 + AO353_18405 0.55 +1.0
4,054,973 - AO353_18405 0.55 -1.3
4,054,973 - AO353_18405 0.55 +0.3
4,054,973 - AO353_18405 0.55 +0.5
4,055,005 + AO353_18405 0.59 +0.9
4,055,005 + AO353_18405 0.59 -0.2
4,055,005 + AO353_18405 0.59 +0.4
4,055,005 + AO353_18405 0.59 +0.5
4,055,006 - AO353_18405 0.59 +0.1
4,055,006 - AO353_18405 0.59 +1.4
4,055,006 - AO353_18405 0.59 -0.5
4,055,006 - AO353_18405 0.59 +0.7
4,055,006 - AO353_18405 0.59 +1.6
4,055,006 - AO353_18405 0.59 +0.3
4,055,006 - AO353_18405 0.59 -0.6
4,055,006 - AO353_18405 0.59 +1.4
4,055,151 + AO353_18405 0.75 -0.3
4,055,152 - AO353_18405 0.75 -0.2
4,055,188 + AO353_18405 0.79 -0.9
4,055,188 + AO353_18405 0.79 +0.3
4,055,188 + AO353_18405 0.79 -0.3
4,055,188 + AO353_18405 0.79 +0.2
4,055,189 - AO353_18405 0.79 -2.1
4,055,189 - AO353_18405 0.79 +0.1
4,055,189 - AO353_18405 0.79 +0.9
4,055,212 + AO353_18405 0.82 -0.1
4,055,212 + AO353_18405 0.82 -0.9
4,055,212 + AO353_18405 0.82 +1.2
4,055,212 + AO353_18405 0.82 +0.6
4,055,213 - AO353_18405 0.82 -0.7
4,055,385 + -0.2
4,055,385 + -1.1
4,055,385 + -0.5
4,055,385 + +0.3
4,055,385 + -0.3
4,055,662 + AO353_18410 0.46 -0.4
4,055,662 + AO353_18410 0.46 -0.5
4,055,662 + AO353_18410 0.46 -1.9
4,055,663 - AO353_18410 0.46 +1.3
4,055,663 - AO353_18410 0.46 +0.0
4,055,663 - AO353_18410 0.46 -1.1
4,055,664 + AO353_18410 0.46 +1.9
4,055,664 + AO353_18410 0.46 -0.7
4,055,664 + AO353_18410 0.46 +0.5
4,055,665 - AO353_18410 0.47 -0.2
4,055,665 - AO353_18410 0.47 +0.7
4,055,897 + AO353_18410 0.85 +1.1
4,055,956 + +0.5
4,055,956 + -0.7
4,055,956 + -1.3
4,055,956 + +0.4
4,055,956 + -1.0
4,055,964 + +1.7
4,055,965 - -1.4
4,055,965 - -0.8
4,055,965 - -2.6
4,055,983 + -0.5
4,055,983 + +0.3
4,055,984 - +0.1
4,055,984 - +0.0
4,056,007 + +0.2
4,056,007 + +0.4
4,056,007 + +0.7
4,056,007 + -2.1
4,056,008 - -0.1
4,056,026 + +1.1
4,056,036 + -0.8
4,056,036 + +0.5
4,056,036 + +0.4
4,056,036 + -1.3
4,056,036 + -1.8
4,056,037 - +0.5
4,056,037 - -0.9
4,056,037 - +0.4
4,056,037 - +1.9
4,056,039 + +0.1
4,056,039 + +0.2
4,056,039 + +0.4
4,056,039 + -0.4
4,056,039 + +0.1
4,056,039 + -1.8
4,056,039 + +1.1
4,056,039 + +0.2
4,056,039 + -0.7
4,056,039 + -2.7
4,056,039 + -1.9
4,056,039 + +0.5
4,056,039 + -0.7
4,056,039 + +0.2
4,056,040 - -1.0
4,056,040 - -0.6
4,056,040 - +0.4
4,056,040 - +0.0
4,056,040 - +0.5
4,056,040 - +0.6
4,056,040 - -0.3
4,056,040 - +1.1
4,056,040 - +0.5
4,056,125 + +0.3
4,056,125 + -0.9
4,056,126 - -1.5
4,056,126 - +0.7
4,056,126 - +0.6
4,056,225 + +0.1
4,056,225 + -0.4
4,056,225 + -2.1
4,056,225 + +0.0
4,056,225 + -1.1
4,056,225 + +0.1
4,056,226 - -0.7
4,056,226 - -2.2
4,056,226 - -0.6
4,056,226 - +0.3
4,056,473 - AO353_18415 0.22 -0.8
4,056,473 - AO353_18415 0.22 +1.0
4,056,487 + AO353_18415 0.23 -1.1
4,056,488 - AO353_18415 0.23 +1.9
4,056,488 - AO353_18415 0.23 -1.3
4,056,488 - AO353_18415 0.23 -0.1
4,056,488 - AO353_18415 0.23 -1.7
4,056,519 + AO353_18415 0.25 +0.4
4,056,520 - AO353_18415 0.25 -0.7
4,056,578 + AO353_18415 0.28 -0.4
4,056,579 - AO353_18415 0.28 -0.9
4,056,579 - AO353_18415 0.28 -1.1
4,056,579 - AO353_18415 0.28 +0.1
4,056,579 - AO353_18415 0.28 +0.7
4,056,579 - AO353_18415 0.28 -1.6
4,056,696 + AO353_18415 0.34 -0.1
4,056,696 + AO353_18415 0.34 -0.1
4,056,696 + AO353_18415 0.34 -0.1
4,056,697 - AO353_18415 0.34 +0.1
4,056,697 - AO353_18415 0.34 +0.6
4,056,697 - AO353_18415 0.34 -0.4
4,056,697 - AO353_18415 0.34 -0.6
4,056,697 - AO353_18415 0.34 -0.3
4,056,697 - AO353_18415 0.34 -0.7
4,056,757 + AO353_18415 0.37 +1.1
4,056,757 + AO353_18415 0.37 +0.9
4,056,758 - AO353_18415 0.37 +0.0
4,056,758 - AO353_18415 0.37 -2.2
4,056,879 + AO353_18415 0.43 -1.0
4,056,879 + AO353_18415 0.43 -0.4

Or see this region's nucleotide sequence