Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13535

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13530 and AO353_13535 overlap by 4 nucleotidesAO353_13535 and AO353_13540 overlap by 1 nucleotides AO353_13530: AO353_13530 - ABC transporter ATP-binding protein, at 3,003,291 to 3,004,160 _13530 AO353_13535: AO353_13535 - urea ABC transporter permease subunit UrtC, at 3,004,157 to 3,005,236 _13535 AO353_13540: AO353_13540 - urea ABC transporter permease, at 3,005,236 to 3,006,735 _13540 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3003.181 kb on + strandat 3003.181 kb on + strandat 3003.181 kb on + strandat 3003.182 kb on - strandat 3003.182 kb on - strandat 3003.221 kb on + strandat 3003.221 kb on + strandat 3003.221 kb on + strandat 3003.221 kb on + strandat 3003.221 kb on + strandat 3003.221 kb on + strandat 3003.222 kb on - strandat 3003.222 kb on - strandat 3003.222 kb on - strandat 3003.222 kb on - strandat 3003.236 kb on + strandat 3003.236 kb on + strandat 3003.237 kb on - strandat 3003.237 kb on - strandat 3003.237 kb on - strandat 3003.279 kb on + strandat 3003.279 kb on + strandat 3003.279 kb on + strandat 3003.279 kb on + strandat 3003.279 kb on + strandat 3003.292 kb on + strandat 3003.292 kb on + strandat 3003.292 kb on + strandat 3003.293 kb on - strandat 3003.293 kb on - strandat 3003.293 kb on - strandat 3003.293 kb on - strandat 3003.293 kb on - strandat 3003.293 kb on - strandat 3003.296 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.304 kb on + strandat 3003.305 kb on - strandat 3003.305 kb on - strandat 3003.305 kb on - strandat 3003.305 kb on - strandat 3003.305 kb on - strandat 3003.305 kb on - strandat 3003.684 kb on + strand, within AO353_13530at 3003.685 kb on - strand, within AO353_13530at 3003.727 kb on - strand, within AO353_13530at 3003.727 kb on - strand, within AO353_13530at 3003.952 kb on + strand, within AO353_13530at 3003.952 kb on + strand, within AO353_13530at 3003.953 kb on - strand, within AO353_13530at 3003.953 kb on - strand, within AO353_13530at 3004.206 kb on + strandat 3004.206 kb on + strandat 3004.206 kb on + strandat 3004.206 kb on + strandat 3004.206 kb on + strandat 3004.206 kb on + strandat 3004.207 kb on - strandat 3004.207 kb on - strandat 3004.207 kb on - strandat 3004.207 kb on - strandat 3004.207 kb on - strandat 3004.207 kb on - strandat 3004.207 kb on - strandat 3004.295 kb on + strand, within AO353_13535at 3004.295 kb on + strand, within AO353_13535at 3004.295 kb on + strand, within AO353_13535at 3004.295 kb on + strand, within AO353_13535at 3004.296 kb on - strand, within AO353_13535at 3004.296 kb on - strand, within AO353_13535at 3004.296 kb on - strand, within AO353_13535at 3004.296 kb on - strand, within AO353_13535at 3004.296 kb on - strand, within AO353_13535at 3004.419 kb on + strand, within AO353_13535at 3004.419 kb on + strand, within AO353_13535at 3004.764 kb on + strand, within AO353_13535at 3004.764 kb on + strandat 3004.765 kb on - strand, within AO353_13535at 3004.765 kb on - strand, within AO353_13535at 3004.765 kb on - strand, within AO353_13535at 3004.855 kb on + strand, within AO353_13535at 3004.855 kb on + strand, within AO353_13535at 3004.855 kb on + strand, within AO353_13535at 3004.878 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.953 kb on + strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.954 kb on - strand, within AO353_13535at 3004.968 kb on + strand, within AO353_13535at 3004.969 kb on - strand, within AO353_13535at 3005.059 kb on - strand, within AO353_13535at 3005.059 kb on - strand, within AO353_13535at 3005.091 kb on + strand, within AO353_13535at 3005.329 kb on + strandat 3005.450 kb on + strand, within AO353_13540at 3005.450 kb on + strand, within AO353_13540at 3005.450 kb on + strand, within AO353_13540at 3005.450 kb on + strand, within AO353_13540at 3005.450 kb on + strand, within AO353_13540at 3005.450 kb on + strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.451 kb on - strand, within AO353_13540at 3005.563 kb on + strand, within AO353_13540at 3005.563 kb on + strand, within AO353_13540at 3005.696 kb on + strand, within AO353_13540at 3005.696 kb on + strand, within AO353_13540at 3005.696 kb on + strand, within AO353_13540at 3005.696 kb on + strand, within AO353_13540at 3005.696 kb on + strand, within AO353_13540at 3005.696 kb on + strand, within AO353_13540at 3005.697 kb on - strand, within AO353_13540at 3005.712 kb on + strand, within AO353_13540at 3005.712 kb on + strand, within AO353_13540at 3005.719 kb on + strand, within AO353_13540at 3005.719 kb on + strand, within AO353_13540at 3005.720 kb on - strand, within AO353_13540at 3005.720 kb on - strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.797 kb on + strand, within AO353_13540at 3005.798 kb on - strand, within AO353_13540at 3005.798 kb on - strand, within AO353_13540at 3005.798 kb on - strand, within AO353_13540at 3005.798 kb on - strand, within AO353_13540at 3005.798 kb on - strand, within AO353_13540at 3005.936 kb on + strand, within AO353_13540at 3005.937 kb on - strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.987 kb on + strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.988 kb on - strand, within AO353_13540at 3005.996 kb on + strand, within AO353_13540at 3005.997 kb on - strand, within AO353_13540

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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3,003,181 + +2.4
3,003,181 + +0.5
3,003,181 + -1.1
3,003,182 - -0.1
3,003,182 - +0.9
3,003,221 + +1.3
3,003,221 + +0.0
3,003,221 + -0.7
3,003,221 + -0.0
3,003,221 + +0.6
3,003,221 + -0.9
3,003,222 - +0.4
3,003,222 - -0.8
3,003,222 - +0.4
3,003,222 - -0.9
3,003,236 + -1.1
3,003,236 + -0.5
3,003,237 - -0.7
3,003,237 - +1.6
3,003,237 - +0.8
3,003,279 + +0.9
3,003,279 + -1.5
3,003,279 + -0.3
3,003,279 + -0.2
3,003,279 + -1.6
3,003,292 + +0.4
3,003,292 + -0.5
3,003,292 + +0.1
3,003,293 - -1.1
3,003,293 - -0.5
3,003,293 - -0.3
3,003,293 - +0.2
3,003,293 - -1.2
3,003,293 - +1.2
3,003,296 + -1.8
3,003,304 + +0.8
3,003,304 + +0.1
3,003,304 + -0.3
3,003,304 + -0.5
3,003,304 + -0.5
3,003,304 + -0.9
3,003,304 + +0.9
3,003,304 + +0.2
3,003,304 + -0.6
3,003,304 + -0.9
3,003,305 - -1.3
3,003,305 - -1.3
3,003,305 - -0.9
3,003,305 - -1.0
3,003,305 - -1.3
3,003,305 - -2.0
3,003,684 + AO353_13530 0.45 -2.0
3,003,685 - AO353_13530 0.45 +0.6
3,003,727 - AO353_13530 0.50 +0.9
3,003,727 - AO353_13530 0.50 -1.3
3,003,952 + AO353_13530 0.76 -1.5
3,003,952 + AO353_13530 0.76 +1.1
3,003,953 - AO353_13530 0.76 -0.3
3,003,953 - AO353_13530 0.76 -0.1
3,004,206 + -0.4
3,004,206 + -3.0
3,004,206 + -0.8
3,004,206 + +0.0
3,004,206 + +1.2
3,004,206 + +1.0
3,004,207 - -0.9
3,004,207 - -1.8
3,004,207 - +0.3
3,004,207 - -0.5
3,004,207 - +0.8
3,004,207 - -0.9
3,004,207 - +0.4
3,004,295 + AO353_13535 0.13 -1.5
3,004,295 + AO353_13535 0.13 -0.1
3,004,295 + AO353_13535 0.13 +0.2
3,004,295 + AO353_13535 0.13 +0.2
3,004,296 - AO353_13535 0.13 -0.1
3,004,296 - AO353_13535 0.13 -0.1
3,004,296 - AO353_13535 0.13 -1.5
3,004,296 - AO353_13535 0.13 -2.3
3,004,296 - AO353_13535 0.13 -1.1
3,004,419 + AO353_13535 0.24 -3.2
3,004,419 + AO353_13535 0.24 -1.2
3,004,764 + AO353_13535 0.56 -0.9
3,004,764 + +1.4
3,004,765 - AO353_13535 0.56 -1.1
3,004,765 - AO353_13535 0.56 -1.4
3,004,765 - AO353_13535 0.56 -0.1
3,004,855 + AO353_13535 0.65 +0.4
3,004,855 + AO353_13535 0.65 +0.2
3,004,855 + AO353_13535 0.65 -0.5
3,004,878 + AO353_13535 0.67 +0.2
3,004,953 + AO353_13535 0.74 -0.8
3,004,953 + AO353_13535 0.74 -0.1
3,004,953 + AO353_13535 0.74 -0.3
3,004,953 + AO353_13535 0.74 +0.8
3,004,953 + AO353_13535 0.74 -1.6
3,004,953 + AO353_13535 0.74 -1.0
3,004,953 + AO353_13535 0.74 +0.5
3,004,953 + AO353_13535 0.74 +0.7
3,004,953 + AO353_13535 0.74 -1.1
3,004,953 + AO353_13535 0.74 -0.4
3,004,954 - AO353_13535 0.74 +0.2
3,004,954 - AO353_13535 0.74 -0.4
3,004,954 - AO353_13535 0.74 -1.5
3,004,954 - AO353_13535 0.74 +2.4
3,004,954 - AO353_13535 0.74 -1.2
3,004,954 - AO353_13535 0.74 -0.4
3,004,954 - AO353_13535 0.74 -1.3
3,004,954 - AO353_13535 0.74 +1.4
3,004,954 - AO353_13535 0.74 +0.7
3,004,954 - AO353_13535 0.74 -0.7
3,004,968 + AO353_13535 0.75 -1.4
3,004,969 - AO353_13535 0.75 -0.7
3,005,059 - AO353_13535 0.84 -1.0
3,005,059 - AO353_13535 0.84 +0.1
3,005,091 + AO353_13535 0.86 -1.5
3,005,329 + -0.4
3,005,450 + AO353_13540 0.14 -0.1
3,005,450 + AO353_13540 0.14 -1.0
3,005,450 + AO353_13540 0.14 +0.3
3,005,450 + AO353_13540 0.14 -1.0
3,005,450 + AO353_13540 0.14 -1.1
3,005,450 + AO353_13540 0.14 +0.5
3,005,451 - AO353_13540 0.14 +0.7
3,005,451 - AO353_13540 0.14 +0.1
3,005,451 - AO353_13540 0.14 -0.5
3,005,451 - AO353_13540 0.14 +1.7
3,005,451 - AO353_13540 0.14 +0.6
3,005,451 - AO353_13540 0.14 -2.2
3,005,451 - AO353_13540 0.14 -1.8
3,005,451 - AO353_13540 0.14 -2.9
3,005,451 - AO353_13540 0.14 +0.2
3,005,563 + AO353_13540 0.22 -0.4
3,005,563 + AO353_13540 0.22 -0.8
3,005,696 + AO353_13540 0.31 -1.8
3,005,696 + AO353_13540 0.31 +0.3
3,005,696 + AO353_13540 0.31 -0.1
3,005,696 + AO353_13540 0.31 +0.7
3,005,696 + AO353_13540 0.31 -0.6
3,005,696 + AO353_13540 0.31 +0.3
3,005,697 - AO353_13540 0.31 +2.1
3,005,712 + AO353_13540 0.32 -2.1
3,005,712 + AO353_13540 0.32 -0.6
3,005,719 + AO353_13540 0.32 -0.4
3,005,719 + AO353_13540 0.32 -0.1
3,005,720 - AO353_13540 0.32 +1.1
3,005,720 - AO353_13540 0.32 -1.4
3,005,797 + AO353_13540 0.37 -1.0
3,005,797 + AO353_13540 0.37 -1.3
3,005,797 + AO353_13540 0.37 -0.5
3,005,797 + AO353_13540 0.37 +0.1
3,005,797 + AO353_13540 0.37 +0.1
3,005,797 + AO353_13540 0.37 +0.2
3,005,797 + AO353_13540 0.37 +0.5
3,005,797 + AO353_13540 0.37 -0.8
3,005,797 + AO353_13540 0.37 -1.4
3,005,797 + AO353_13540 0.37 -0.1
3,005,797 + AO353_13540 0.37 -1.4
3,005,798 - AO353_13540 0.37 +1.9
3,005,798 - AO353_13540 0.37 -0.1
3,005,798 - AO353_13540 0.37 -1.5
3,005,798 - AO353_13540 0.37 -0.1
3,005,798 - AO353_13540 0.37 -0.4
3,005,936 + AO353_13540 0.47 -0.9
3,005,937 - AO353_13540 0.47 -0.3
3,005,987 + AO353_13540 0.50 +0.3
3,005,987 + AO353_13540 0.50 -0.5
3,005,987 + AO353_13540 0.50 -0.5
3,005,987 + AO353_13540 0.50 -2.0
3,005,987 + AO353_13540 0.50 -0.2
3,005,987 + AO353_13540 0.50 -0.7
3,005,987 + AO353_13540 0.50 -0.3
3,005,987 + AO353_13540 0.50 -0.6
3,005,987 + AO353_13540 0.50 -0.1
3,005,987 + AO353_13540 0.50 -0.2
3,005,987 + AO353_13540 0.50 -0.1
3,005,988 - AO353_13540 0.50 -1.5
3,005,988 - AO353_13540 0.50 -0.2
3,005,988 - AO353_13540 0.50 -0.8
3,005,988 - AO353_13540 0.50 -1.5
3,005,988 - AO353_13540 0.50 -0.8
3,005,988 - AO353_13540 0.50 -1.1
3,005,988 - AO353_13540 0.50 +1.4
3,005,996 + AO353_13540 0.51 -0.9
3,005,997 - AO353_13540 0.51 -0.9

Or see this region's nucleotide sequence