Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04670

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04665 and AO353_04670 are separated by 349 nucleotidesAO353_04670 and AO353_04675 are separated by 305 nucleotides AO353_04665: AO353_04665 - ATPase, at 1,005,248 to 1,006,639 _04665 AO353_04670: AO353_04670 - polysaccharide deacetylase, at 1,006,989 to 1,008,113 _04670 AO353_04675: AO353_04675 - hypothetical protein, at 1,008,419 to 1,009,198 _04675 Position (kb) 1006 1007 1008 1009Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1006.003 kb on + strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.004 kb on - strand, within AO353_04665at 1006.004 kb on - strand, within AO353_04665at 1006.004 kb on - strand, within AO353_04665at 1006.164 kb on + strand, within AO353_04665at 1006.164 kb on + strand, within AO353_04665at 1006.164 kb on + strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.578 kb on - strandat 1006.578 kb on - strandat 1006.578 kb on - strandat 1006.578 kb on - strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.621 kb on + strandat 1006.621 kb on + strandat 1006.622 kb on - strandat 1006.622 kb on - strandat 1006.622 kb on - strandat 1006.639 kb on + strandat 1006.640 kb on - strandat 1006.640 kb on - strandat 1006.674 kb on + strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.814 kb on - strandat 1006.814 kb on - strandat 1006.816 kb on + strandat 1006.816 kb on + strandat 1006.817 kb on - strandat 1006.817 kb on - strandat 1006.867 kb on - strandat 1006.914 kb on + strandat 1006.938 kb on + strandat 1006.938 kb on + strandat 1006.938 kb on + strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.974 kb on - strandat 1007.333 kb on - strand, within AO353_04670at 1007.333 kb on - strand, within AO353_04670at 1007.333 kb on - strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.501 kb on - strand, within AO353_04670at 1007.600 kb on - strand, within AO353_04670at 1007.600 kb on - strand, within AO353_04670at 1007.713 kb on + strand, within AO353_04670at 1007.714 kb on - strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.716 kb on + strand, within AO353_04670at 1007.717 kb on - strand, within AO353_04670at 1007.717 kb on - strand, within AO353_04670at 1007.825 kb on + strand, within AO353_04670at 1007.825 kb on + strand, within AO353_04670at 1007.825 kb on + strand, within AO353_04670at 1007.825 kb on + strand, within AO353_04670at 1007.825 kb on + strand, within AO353_04670at 1007.826 kb on - strand, within AO353_04670at 1007.826 kb on - strand, within AO353_04670at 1007.826 kb on - strand, within AO353_04670at 1007.826 kb on - strand, within AO353_04670at 1007.826 kb on - strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.827 kb on + strand, within AO353_04670at 1007.828 kb on - strand, within AO353_04670at 1007.828 kb on - strand, within AO353_04670at 1007.828 kb on - strand, within AO353_04670at 1007.828 kb on - strand, within AO353_04670at 1007.852 kb on + strand, within AO353_04670at 1007.852 kb on + strand, within AO353_04670at 1007.852 kb on + strand, within AO353_04670at 1007.853 kb on - strand, within AO353_04670at 1007.853 kb on - strand, within AO353_04670at 1007.913 kb on + strand, within AO353_04670at 1007.914 kb on - strand, within AO353_04670at 1008.065 kb on - strandat 1008.065 kb on - strandat 1008.099 kb on + strandat 1008.099 kb on + strandat 1008.099 kb on + strandat 1008.100 kb on - strandat 1008.100 kb on - strandat 1008.127 kb on + strandat 1008.128 kb on - strandat 1008.147 kb on + strandat 1008.147 kb on + strandat 1008.147 kb on + strandat 1008.147 kb on + strandat 1008.147 kb on + strandat 1008.147 kb on + strandat 1008.148 kb on - strandat 1008.148 kb on - strandat 1008.148 kb on - strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.149 kb on + strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.150 kb on - strandat 1008.348 kb on + strandat 1008.349 kb on - strandat 1008.349 kb on - strandat 1008.359 kb on + strandat 1008.386 kb on + strandat 1008.386 kb on + strandat 1008.386 kb on + strandat 1008.386 kb on + strandat 1008.386 kb on + strandat 1008.386 kb on + strandat 1008.387 kb on - strandat 1008.403 kb on + strandat 1008.455 kb on + strandat 1008.497 kb on + strand, within AO353_04675at 1008.497 kb on + strand, within AO353_04675at 1008.497 kb on + strand, within AO353_04675at 1008.498 kb on - strand, within AO353_04675at 1008.631 kb on + strand, within AO353_04675at 1008.680 kb on + strand, within AO353_04675at 1008.680 kb on + strand, within AO353_04675at 1008.680 kb on + strand, within AO353_04675at 1008.681 kb on - strand, within AO353_04675at 1008.681 kb on - strand, within AO353_04675at 1008.681 kb on - strand, within AO353_04675at 1008.681 kb on - strand, within AO353_04675at 1008.681 kb on - strand, within AO353_04675at 1008.725 kb on + strand, within AO353_04675at 1008.725 kb on + strand, within AO353_04675at 1008.726 kb on - strand, within AO353_04675at 1008.726 kb on - strand, within AO353_04675at 1008.762 kb on - strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.848 kb on + strand, within AO353_04675at 1008.849 kb on - strand, within AO353_04675at 1008.849 kb on - strand, within AO353_04675at 1008.849 kb on - strand, within AO353_04675at 1008.849 kb on - strand, within AO353_04675at 1008.849 kb on - strand, within AO353_04675at 1009.019 kb on + strand, within AO353_04675at 1009.019 kb on + strand, within AO353_04675at 1009.020 kb on - strand, within AO353_04675at 1009.020 kb on - strand, within AO353_04675at 1009.020 kb on - strand, within AO353_04675at 1009.037 kb on + strand, within AO353_04675at 1009.037 kb on + strand, within AO353_04675at 1009.037 kb on + strand, within AO353_04675at 1009.037 kb on + strand, within AO353_04675at 1009.037 kb on + strand, within AO353_04675at 1009.038 kb on - strand, within AO353_04675at 1009.038 kb on - strand, within AO353_04675at 1009.038 kb on - strand, within AO353_04675at 1009.038 kb on - strand, within AO353_04675at 1009.038 kb on - strand, within AO353_04675at 1009.038 kb on - strand, within AO353_04675

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,006,003 + AO353_04665 0.54 -0.8
1,006,003 + AO353_04665 0.54 -0.2
1,006,003 + AO353_04665 0.54 +0.6
1,006,003 + AO353_04665 0.54 -0.8
1,006,004 - AO353_04665 0.54 +0.2
1,006,004 - AO353_04665 0.54 -0.4
1,006,004 - AO353_04665 0.54 -0.7
1,006,164 + AO353_04665 0.66 -0.2
1,006,164 + AO353_04665 0.66 -0.8
1,006,164 + AO353_04665 0.66 +0.4
1,006,165 - AO353_04665 0.66 +0.5
1,006,165 - AO353_04665 0.66 -0.5
1,006,165 - AO353_04665 0.66 -0.9
1,006,165 - AO353_04665 0.66 -0.1
1,006,165 - AO353_04665 0.66 -0.6
1,006,577 + +1.3
1,006,577 + +0.4
1,006,577 + -0.4
1,006,577 + +0.5
1,006,577 + +0.5
1,006,577 + -0.3
1,006,577 + -0.2
1,006,577 + +0.3
1,006,577 + -2.0
1,006,577 + +0.4
1,006,577 + -0.8
1,006,577 + +0.3
1,006,577 + -0.7
1,006,578 - -0.5
1,006,578 - +0.7
1,006,578 - -0.5
1,006,578 - +1.2
1,006,592 + -0.3
1,006,592 + +0.4
1,006,592 + -0.4
1,006,592 + -0.8
1,006,592 + +0.4
1,006,593 - +1.0
1,006,593 - +0.1
1,006,593 - +0.4
1,006,593 - -0.4
1,006,593 - -0.1
1,006,596 + +0.0
1,006,596 + -0.5
1,006,596 + +0.4
1,006,596 + +0.8
1,006,596 + -1.0
1,006,597 - -0.5
1,006,597 - +1.0
1,006,597 - -0.6
1,006,597 - -0.1
1,006,597 - +1.2
1,006,597 - -1.4
1,006,597 - -2.0
1,006,597 - +0.5
1,006,597 - -0.7
1,006,597 - -0.8
1,006,597 - -0.6
1,006,597 - -1.1
1,006,597 - -0.1
1,006,621 + -0.8
1,006,621 + +1.4
1,006,622 - +0.3
1,006,622 - -0.6
1,006,622 - -1.3
1,006,639 + -1.2
1,006,640 - -1.6
1,006,640 - -0.7
1,006,674 + +0.0
1,006,675 - -0.1
1,006,675 - -1.0
1,006,675 - +0.4
1,006,675 - +0.6
1,006,675 - +0.3
1,006,813 + +0.6
1,006,813 + +0.5
1,006,813 + +0.1
1,006,813 + -0.6
1,006,813 + -1.0
1,006,814 - +0.6
1,006,814 - -1.1
1,006,816 + -1.8
1,006,816 + -0.6
1,006,817 - +0.1
1,006,817 - +0.1
1,006,867 - +0.7
1,006,914 + +0.4
1,006,938 + +0.2
1,006,938 + +1.2
1,006,938 + +0.7
1,006,939 - +0.4
1,006,939 - -0.2
1,006,939 - +1.0
1,006,939 - +0.4
1,006,939 - +0.6
1,006,939 - +1.4
1,006,939 - +1.2
1,006,974 - +1.5
1,007,333 - AO353_04670 0.31 -0.6
1,007,333 - AO353_04670 0.31 -0.4
1,007,333 - AO353_04670 0.31 +1.0
1,007,401 + AO353_04670 0.37 +0.0
1,007,401 + AO353_04670 0.37 -1.1
1,007,401 + AO353_04670 0.37 -0.6
1,007,401 + AO353_04670 0.37 +0.6
1,007,402 - AO353_04670 0.37 +0.4
1,007,402 - AO353_04670 0.37 -1.1
1,007,402 - AO353_04670 0.37 -0.8
1,007,402 - AO353_04670 0.37 -1.4
1,007,500 + AO353_04670 0.45 -0.5
1,007,500 + AO353_04670 0.45 +0.7
1,007,500 + AO353_04670 0.45 +0.4
1,007,500 + AO353_04670 0.45 -1.8
1,007,501 - AO353_04670 0.46 +1.2
1,007,600 - AO353_04670 0.54 -0.5
1,007,600 - AO353_04670 0.54 -0.1
1,007,713 + AO353_04670 0.64 +0.2
1,007,714 - AO353_04670 0.64 +0.2
1,007,716 + AO353_04670 0.65 +0.9
1,007,716 + AO353_04670 0.65 +1.7
1,007,716 + AO353_04670 0.65 -0.3
1,007,716 + AO353_04670 0.65 +1.1
1,007,716 + AO353_04670 0.65 +1.2
1,007,716 + AO353_04670 0.65 -0.7
1,007,716 + AO353_04670 0.65 +0.5
1,007,716 + AO353_04670 0.65 -0.3
1,007,717 - AO353_04670 0.65 -0.1
1,007,717 - AO353_04670 0.65 -3.1
1,007,825 + AO353_04670 0.74 +0.2
1,007,825 + AO353_04670 0.74 -0.4
1,007,825 + AO353_04670 0.74 +1.0
1,007,825 + AO353_04670 0.74 -0.1
1,007,825 + AO353_04670 0.74 -0.5
1,007,826 - AO353_04670 0.74 +1.2
1,007,826 - AO353_04670 0.74 +0.6
1,007,826 - AO353_04670 0.74 -1.0
1,007,826 - AO353_04670 0.74 -1.0
1,007,826 - AO353_04670 0.74 +0.4
1,007,827 + AO353_04670 0.74 -1.3
1,007,827 + AO353_04670 0.74 -0.1
1,007,827 + AO353_04670 0.74 -1.1
1,007,827 + AO353_04670 0.74 +0.3
1,007,827 + AO353_04670 0.74 -0.2
1,007,827 + AO353_04670 0.74 +0.8
1,007,827 + AO353_04670 0.74 +1.4
1,007,828 - AO353_04670 0.75 +1.5
1,007,828 - AO353_04670 0.75 -0.1
1,007,828 - AO353_04670 0.75 -1.4
1,007,828 - AO353_04670 0.75 +0.8
1,007,852 + AO353_04670 0.77 -0.3
1,007,852 + AO353_04670 0.77 +1.0
1,007,852 + AO353_04670 0.77 +1.4
1,007,853 - AO353_04670 0.77 +1.8
1,007,853 - AO353_04670 0.77 -1.3
1,007,913 + AO353_04670 0.82 -0.6
1,007,914 - AO353_04670 0.82 -1.3
1,008,065 - -0.5
1,008,065 - +0.4
1,008,099 + -2.0
1,008,099 + -1.3
1,008,099 + -0.6
1,008,100 - +1.4
1,008,100 - -0.8
1,008,127 + -0.5
1,008,128 - -0.6
1,008,147 + +0.1
1,008,147 + -1.1
1,008,147 + +0.1
1,008,147 + -0.2
1,008,147 + +0.9
1,008,147 + -0.4
1,008,148 - +1.9
1,008,148 - +0.0
1,008,148 - +1.2
1,008,149 + -0.1
1,008,149 + -0.3
1,008,149 + +0.9
1,008,149 + +1.1
1,008,149 + -0.3
1,008,149 + -0.8
1,008,149 + -0.2
1,008,149 + -1.9
1,008,149 + -1.1
1,008,149 + +1.2
1,008,149 + +0.9
1,008,149 + +0.7
1,008,149 + -1.1
1,008,149 + -0.0
1,008,150 - -0.7
1,008,150 - +1.0
1,008,150 - -0.6
1,008,150 - +0.3
1,008,150 - +0.0
1,008,150 - +0.0
1,008,150 - -1.2
1,008,150 - -0.4
1,008,150 - -2.0
1,008,150 - +0.1
1,008,150 - -0.1
1,008,150 - -1.3
1,008,150 - +0.7
1,008,348 + +2.0
1,008,349 - -0.1
1,008,349 - -0.3
1,008,359 + +0.2
1,008,386 + +3.2
1,008,386 + -1.3
1,008,386 + +0.2
1,008,386 + +0.2
1,008,386 + -0.3
1,008,386 + +0.2
1,008,387 - -1.5
1,008,403 + -0.4
1,008,455 + +0.2
1,008,497 + AO353_04675 0.10 -0.0
1,008,497 + AO353_04675 0.10 +1.0
1,008,497 + AO353_04675 0.10 -1.0
1,008,498 - AO353_04675 0.10 +0.1
1,008,631 + AO353_04675 0.27 -0.6
1,008,680 + AO353_04675 0.33 -0.2
1,008,680 + AO353_04675 0.33 -0.4
1,008,680 + AO353_04675 0.33 -1.4
1,008,681 - AO353_04675 0.34 -1.5
1,008,681 - AO353_04675 0.34 -1.6
1,008,681 - AO353_04675 0.34 -0.6
1,008,681 - AO353_04675 0.34 +0.2
1,008,681 - AO353_04675 0.34 -0.3
1,008,725 + AO353_04675 0.39 +0.8
1,008,725 + AO353_04675 0.39 +0.0
1,008,726 - AO353_04675 0.39 +0.2
1,008,726 - AO353_04675 0.39 -0.4
1,008,762 - AO353_04675 0.44 +0.9
1,008,848 + AO353_04675 0.55 -1.0
1,008,848 + AO353_04675 0.55 -0.3
1,008,848 + AO353_04675 0.55 +0.2
1,008,848 + AO353_04675 0.55 +1.0
1,008,848 + AO353_04675 0.55 +0.4
1,008,848 + AO353_04675 0.55 +0.0
1,008,848 + AO353_04675 0.55 +0.7
1,008,848 + AO353_04675 0.55 +0.4
1,008,849 - AO353_04675 0.55 -1.1
1,008,849 - AO353_04675 0.55 -0.8
1,008,849 - AO353_04675 0.55 -0.3
1,008,849 - AO353_04675 0.55 +0.0
1,008,849 - AO353_04675 0.55 +0.1
1,009,019 + AO353_04675 0.77 -0.2
1,009,019 + AO353_04675 0.77 +0.8
1,009,020 - AO353_04675 0.77 +0.2
1,009,020 - AO353_04675 0.77 -0.9
1,009,020 - AO353_04675 0.77 +0.2
1,009,037 + AO353_04675 0.79 +1.0
1,009,037 + AO353_04675 0.79 +0.9
1,009,037 + AO353_04675 0.79 -1.0
1,009,037 + AO353_04675 0.79 -0.3
1,009,037 + AO353_04675 0.79 +0.3
1,009,038 - AO353_04675 0.79 +0.0
1,009,038 - AO353_04675 0.79 -0.7
1,009,038 - AO353_04675 0.79 +0.4
1,009,038 - AO353_04675 0.79 -0.5
1,009,038 - AO353_04675 0.79 -0.1
1,009,038 - AO353_04675 0.79 -0.3

Or see this region's nucleotide sequence