Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1105

Experiment: Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1103 and BT1104 are separated by 46 nucleotidesBT1104 and BT1105 are separated by 67 nucleotidesBT1105 and BT1106 are separated by 13 nucleotides BT1103: BT1103 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 1,392,562 to 1,393,056 BT1103 BT1104: BT1104 - small heat shock protein (NCBI ptt file), at 1,393,103 to 1,393,531 BT1104 BT1105: BT1105 - phosphoglycerate mutase 1 (NCBI ptt file), at 1,393,599 to 1,394,348 BT1105 BT1106: BT1106 - fructose-bisphosphate aldolase class I (NCBI ptt file), at 1,394,362 to 1,395,411 BT1106 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -2 -1 0 1 2at 1392.604 kb on - strandat 1392.692 kb on - strand, within BT1103at 1392.772 kb on + strand, within BT1103at 1392.877 kb on - strand, within BT1103at 1392.883 kb on - strand, within BT1103at 1392.951 kb on + strand, within BT1103at 1393.024 kb on + strandat 1393.064 kb on + strandat 1393.117 kb on + strandat 1393.144 kb on + strandat 1393.254 kb on + strand, within BT1104at 1393.360 kb on + strand, within BT1104at 1393.672 kb on + strandat 1393.829 kb on + strand, within BT1105at 1393.884 kb on - strand, within BT1105at 1394.035 kb on + strand, within BT1105at 1394.057 kb on + strand, within BT1105at 1394.058 kb on - strand, within BT1105at 1394.328 kb on + strandat 1394.331 kb on + strandat 1394.337 kb on + strandat 1394.337 kb on + strandat 1394.337 kb on + strandat 1394.391 kb on - strandat 1394.391 kb on - strandat 1394.392 kb on + strandat 1394.392 kb on + strandat 1394.392 kb on + strandat 1394.393 kb on - strandat 1394.813 kb on + strand, within BT1106at 1394.814 kb on - strand, within BT1106at 1394.929 kb on + strand, within BT1106at 1395.048 kb on - strand, within BT1106at 1395.096 kb on + strand, within BT1106at 1395.121 kb on + strand, within BT1106at 1395.184 kb on + strand, within BT1106at 1395.185 kb on - strand, within BT1106at 1395.245 kb on + strand, within BT1106at 1395.298 kb on + strand, within BT1106at 1395.303 kb on + strand, within BT1106at 1395.304 kb on - strand, within BT1106at 1395.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.01 mg/ml
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1,392,604 - -2.0
1,392,692 - BT1103 0.26 +0.6
1,392,772 + BT1103 0.42 -0.2
1,392,877 - BT1103 0.64 -0.5
1,392,883 - BT1103 0.65 -0.7
1,392,951 + BT1103 0.79 +0.3
1,393,024 + -1.2
1,393,064 + -1.7
1,393,117 + +1.6
1,393,144 + +0.5
1,393,254 + BT1104 0.35 -0.5
1,393,360 + BT1104 0.60 +0.0
1,393,672 + +1.6
1,393,829 + BT1105 0.31 +0.6
1,393,884 - BT1105 0.38 -0.5
1,394,035 + BT1105 0.58 -0.1
1,394,057 + BT1105 0.61 +0.1
1,394,058 - BT1105 0.61 +0.4
1,394,328 + +0.2
1,394,331 + +1.0
1,394,337 + +0.6
1,394,337 + -1.0
1,394,337 + -1.2
1,394,391 - +0.3
1,394,391 - +0.3
1,394,392 + -0.4
1,394,392 + -0.8
1,394,392 + +0.0
1,394,393 - -0.7
1,394,813 + BT1106 0.43 -1.5
1,394,814 - BT1106 0.43 -1.8
1,394,929 + BT1106 0.54 +0.0
1,395,048 - BT1106 0.65 +1.0
1,395,096 + BT1106 0.70 -1.0
1,395,121 + BT1106 0.72 +1.6
1,395,184 + BT1106 0.78 +1.8
1,395,185 - BT1106 0.78 -0.4
1,395,245 + BT1106 0.84 +0.0
1,395,298 + BT1106 0.89 -0.6
1,395,303 + BT1106 0.90 -0.4
1,395,304 - BT1106 0.90 +0.2
1,395,307 + -0.4

Or see this region's nucleotide sequence