Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24065

Experiment: NAG carbon and (N); with MOPS

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS24060 and PFLU_RS24065 overlap by 4 nucleotidesPFLU_RS24065 and PFLU_RS24070 overlap by 1 nucleotidesPFLU_RS24070 and PFLU_RS24075 are separated by 14 nucleotides PFLU_RS24060: PFLU_RS24060 - Tol-Pal system protein TolB, at 5,388,348 to 5,389,649 _RS24060 PFLU_RS24065: PFLU_RS24065 - cell envelope integrity protein TolA, at 5,389,646 to 5,390,719 _RS24065 PFLU_RS24070: PFLU_RS24070 - protein TolR, at 5,390,719 to 5,391,180 _RS24070 PFLU_RS24075: PFLU_RS24075 - protein TolQ, at 5,391,195 to 5,391,890 _RS24075 Position (kb) 5389 5390 5391Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5389.656 kb on - strandat 5389.656 kb on - strandat 5391.197 kb on - strandat 5391.197 kb on - strandat 5391.197 kb on - strandat 5391.197 kb on - strandat 5391.197 kb on - strandat 5391.197 kb on - strandat 5391.197 kb on - strandat 5391.219 kb on - strandat 5391.219 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG carbon and (N); with MOPS
remove
5,389,656 - -0.3
5,389,656 - -0.9
5,391,197 - -2.0
5,391,197 - -1.9
5,391,197 - -2.0
5,391,197 - -2.3
5,391,197 - +2.1
5,391,197 - +1.1
5,391,197 - +0.3
5,391,219 - +3.3
5,391,219 - +1.8

Or see this region's nucleotide sequence