Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27885

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS27880 and BWI76_RS27885 overlap by 4 nucleotidesBWI76_RS27885 and BWI76_RS27890 are separated by 341 nucleotides BWI76_RS27880: BWI76_RS27880 - 6-phospho-alpha-glucosidase, at 5,781,523 to 5,782,845 _RS27880 BWI76_RS27885: BWI76_RS27885 - PTS alpha-glucoside transporter subunit IICB, at 5,782,842 to 5,784,464 _RS27885 BWI76_RS27890: BWI76_RS27890 - GntR family transcriptional regulator, at 5,784,806 to 5,785,552 _RS27890 Position (kb) 5782 5783 5784 5785Strain fitness (log2 ratio) -2 -1 0 1 2at 5782.010 kb on + strand, within BWI76_RS27880at 5782.044 kb on + strand, within BWI76_RS27880at 5782.052 kb on - strand, within BWI76_RS27880at 5782.053 kb on - strand, within BWI76_RS27880at 5782.105 kb on - strand, within BWI76_RS27880at 5782.191 kb on + strand, within BWI76_RS27880at 5782.262 kb on - strand, within BWI76_RS27880at 5782.295 kb on - strand, within BWI76_RS27880at 5782.295 kb on - strand, within BWI76_RS27880at 5782.404 kb on + strand, within BWI76_RS27880at 5782.462 kb on + strand, within BWI76_RS27880at 5782.643 kb on - strand, within BWI76_RS27880at 5782.695 kb on + strand, within BWI76_RS27880at 5782.716 kb on - strandat 5782.797 kb on + strandat 5782.797 kb on + strandat 5782.797 kb on + strandat 5782.805 kb on - strandat 5782.874 kb on - strandat 5782.900 kb on + strandat 5782.927 kb on - strandat 5782.967 kb on + strandat 5783.053 kb on + strand, within BWI76_RS27885at 5783.053 kb on - strand, within BWI76_RS27885at 5783.207 kb on + strand, within BWI76_RS27885at 5783.215 kb on - strand, within BWI76_RS27885at 5783.215 kb on - strand, within BWI76_RS27885at 5783.393 kb on - strand, within BWI76_RS27885at 5783.424 kb on - strand, within BWI76_RS27885at 5783.515 kb on - strand, within BWI76_RS27885at 5783.527 kb on - strand, within BWI76_RS27885at 5783.527 kb on - strand, within BWI76_RS27885at 5783.625 kb on - strand, within BWI76_RS27885at 5783.628 kb on - strand, within BWI76_RS27885at 5783.638 kb on - strand, within BWI76_RS27885at 5783.745 kb on + strand, within BWI76_RS27885at 5783.828 kb on + strand, within BWI76_RS27885at 5783.855 kb on - strand, within BWI76_RS27885at 5783.855 kb on - strand, within BWI76_RS27885at 5783.876 kb on - strand, within BWI76_RS27885at 5783.884 kb on - strand, within BWI76_RS27885at 5783.942 kb on - strand, within BWI76_RS27885at 5784.000 kb on + strand, within BWI76_RS27885at 5784.141 kb on + strand, within BWI76_RS27885at 5784.218 kb on - strand, within BWI76_RS27885at 5784.224 kb on - strand, within BWI76_RS27885at 5784.301 kb on - strand, within BWI76_RS27885at 5784.327 kb on + strandat 5784.379 kb on - strandat 5784.429 kb on - strandat 5784.486 kb on + strandat 5784.501 kb on + strandat 5784.501 kb on + strandat 5784.501 kb on + strandat 5784.501 kb on + strandat 5784.509 kb on - strandat 5784.542 kb on + strandat 5784.683 kb on - strandat 5784.699 kb on + strandat 5784.699 kb on + strandat 5784.699 kb on + strandat 5784.699 kb on + strandat 5784.699 kb on + strandat 5784.707 kb on - strandat 5784.707 kb on - strandat 5784.707 kb on - strandat 5784.707 kb on - strandat 5784.790 kb on + strandat 5784.866 kb on - strandat 5784.957 kb on + strand, within BWI76_RS27890at 5785.018 kb on - strand, within BWI76_RS27890at 5785.066 kb on + strand, within BWI76_RS27890at 5785.096 kb on - strand, within BWI76_RS27890at 5785.301 kb on + strand, within BWI76_RS27890at 5785.399 kb on + strand, within BWI76_RS27890at 5785.446 kb on + strand, within BWI76_RS27890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
5,782,010 + BWI76_RS27880 0.37 +1.9
5,782,044 + BWI76_RS27880 0.39 -0.4
5,782,052 - BWI76_RS27880 0.40 -0.3
5,782,053 - BWI76_RS27880 0.40 +0.6
5,782,105 - BWI76_RS27880 0.44 +0.7
5,782,191 + BWI76_RS27880 0.50 -0.2
5,782,262 - BWI76_RS27880 0.56 -0.9
5,782,295 - BWI76_RS27880 0.58 -0.3
5,782,295 - BWI76_RS27880 0.58 -1.4
5,782,404 + BWI76_RS27880 0.67 +0.3
5,782,462 + BWI76_RS27880 0.71 -0.8
5,782,643 - BWI76_RS27880 0.85 -0.6
5,782,695 + BWI76_RS27880 0.89 +1.2
5,782,716 - -0.3
5,782,797 + -0.2
5,782,797 + -0.2
5,782,797 + -0.5
5,782,805 - -0.6
5,782,874 - +0.1
5,782,900 + +0.0
5,782,927 - +0.8
5,782,967 + -0.4
5,783,053 + BWI76_RS27885 0.13 +0.6
5,783,053 - BWI76_RS27885 0.13 +0.1
5,783,207 + BWI76_RS27885 0.22 +0.1
5,783,215 - BWI76_RS27885 0.23 -0.2
5,783,215 - BWI76_RS27885 0.23 -0.0
5,783,393 - BWI76_RS27885 0.34 -0.0
5,783,424 - BWI76_RS27885 0.36 -0.5
5,783,515 - BWI76_RS27885 0.41 -0.1
5,783,527 - BWI76_RS27885 0.42 -0.7
5,783,527 - BWI76_RS27885 0.42 -1.2
5,783,625 - BWI76_RS27885 0.48 -0.0
5,783,628 - BWI76_RS27885 0.48 -0.4
5,783,638 - BWI76_RS27885 0.49 +1.0
5,783,745 + BWI76_RS27885 0.56 -0.1
5,783,828 + BWI76_RS27885 0.61 -1.9
5,783,855 - BWI76_RS27885 0.62 -0.4
5,783,855 - BWI76_RS27885 0.62 -1.3
5,783,876 - BWI76_RS27885 0.64 -1.2
5,783,884 - BWI76_RS27885 0.64 -2.1
5,783,942 - BWI76_RS27885 0.68 +0.2
5,784,000 + BWI76_RS27885 0.71 +0.0
5,784,141 + BWI76_RS27885 0.80 +0.3
5,784,218 - BWI76_RS27885 0.85 -0.6
5,784,224 - BWI76_RS27885 0.85 +0.0
5,784,301 - BWI76_RS27885 0.90 +0.3
5,784,327 + -1.0
5,784,379 - +0.4
5,784,429 - -0.4
5,784,486 + +0.0
5,784,501 + -2.3
5,784,501 + +0.0
5,784,501 + +0.0
5,784,501 + +1.8
5,784,509 - -0.5
5,784,542 + -1.3
5,784,683 - +0.7
5,784,699 + -0.4
5,784,699 + -0.3
5,784,699 + -0.4
5,784,699 + -0.7
5,784,699 + +0.1
5,784,707 - +0.2
5,784,707 - +0.1
5,784,707 - +0.6
5,784,707 - +1.1
5,784,790 + -0.1
5,784,866 - -0.4
5,784,957 + BWI76_RS27890 0.20 -1.4
5,785,018 - BWI76_RS27890 0.28 -0.2
5,785,066 + BWI76_RS27890 0.35 +0.7
5,785,096 - BWI76_RS27890 0.39 +0.3
5,785,301 + BWI76_RS27890 0.66 +0.6
5,785,399 + BWI76_RS27890 0.79 -0.7
5,785,446 + BWI76_RS27890 0.86 -0.4

Or see this region's nucleotide sequence