Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20000

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19995 and BWI76_RS20000 are separated by 204 nucleotidesBWI76_RS20000 and BWI76_RS20005 are separated by 96 nucleotidesBWI76_RS20005 and BWI76_RS20010 are separated by 269 nucleotides BWI76_RS19995: BWI76_RS19995 - IclR family transcriptional regulator, at 4,189,179 to 4,189,961 _RS19995 BWI76_RS20000: BWI76_RS20000 - competence/damage-inducible protein A, at 4,190,166 to 4,191,362 _RS20000 BWI76_RS20005: BWI76_RS20005 - membrane protein, at 4,191,459 to 4,192,001 _RS20005 BWI76_RS20010: BWI76_RS20010 - catalase, at 4,192,271 to 4,193,719 _RS20010 Position (kb) 4190 4191 4192Strain fitness (log2 ratio) -2 -1 0 1at 4189.302 kb on - strand, within BWI76_RS19995at 4189.375 kb on - strand, within BWI76_RS19995at 4189.976 kb on - strandat 4190.084 kb on + strandat 4190.092 kb on - strandat 4190.611 kb on - strand, within BWI76_RS20000at 4191.142 kb on - strand, within BWI76_RS20000at 4191.665 kb on + strand, within BWI76_RS20005at 4191.715 kb on + strand, within BWI76_RS20005at 4191.904 kb on + strand, within BWI76_RS20005at 4191.926 kb on + strand, within BWI76_RS20005at 4191.957 kb on + strandat 4192.059 kb on + strandat 4192.099 kb on - strandat 4192.114 kb on - strandat 4192.291 kb on - strandat 4192.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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4,189,302 - BWI76_RS19995 0.16 -1.1
4,189,375 - BWI76_RS19995 0.25 -0.4
4,189,976 - -0.7
4,190,084 + +0.1
4,190,092 - +0.2
4,190,611 - BWI76_RS20000 0.37 -0.4
4,191,142 - BWI76_RS20000 0.82 -1.8
4,191,665 + BWI76_RS20005 0.38 -0.2
4,191,715 + BWI76_RS20005 0.47 -0.0
4,191,904 + BWI76_RS20005 0.82 -0.2
4,191,926 + BWI76_RS20005 0.86 +0.4
4,191,957 + +0.3
4,192,059 + +0.4
4,192,099 - -0.3
4,192,114 - -1.0
4,192,291 - -0.2
4,192,335 + +0.1

Or see this region's nucleotide sequence