Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13340

Experiment: D-Maltose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13335 and BWI76_RS13340 are separated by 113 nucleotidesBWI76_RS13340 and BWI76_RS13345 are separated by 138 nucleotidesBWI76_RS13345 and BWI76_RS13350 are separated by 88 nucleotides BWI76_RS13335: BWI76_RS13335 - peptidase T, at 2,780,655 to 2,781,884 _RS13335 BWI76_RS13340: BWI76_RS13340 - peptide ABC transporter substrate-binding protein, at 2,781,998 to 2,783,590 _RS13340 BWI76_RS13345: BWI76_RS13345 - DUF3313 domain-containing protein, at 2,783,729 to 2,784,397 _RS13345 BWI76_RS13350: BWI76_RS13350 - EamA family transporter, at 2,784,486 to 2,785,394 _RS13350 Position (kb) 2781 2782 2783 2784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2780.999 kb on - strand, within BWI76_RS13335at 2781.008 kb on + strand, within BWI76_RS13335at 2781.340 kb on - strand, within BWI76_RS13335at 2781.475 kb on - strand, within BWI76_RS13335at 2781.532 kb on - strand, within BWI76_RS13335at 2781.578 kb on - strand, within BWI76_RS13335at 2781.629 kb on - strand, within BWI76_RS13335at 2781.867 kb on + strandat 2781.884 kb on + strandat 2781.892 kb on - strandat 2782.016 kb on - strandat 2782.125 kb on - strandat 2782.126 kb on - strandat 2782.128 kb on - strandat 2782.137 kb on + strandat 2782.144 kb on + strandat 2782.144 kb on + strandat 2782.145 kb on - strandat 2782.145 kb on - strandat 2782.160 kb on + strand, within BWI76_RS13340at 2782.194 kb on + strand, within BWI76_RS13340at 2782.202 kb on - strand, within BWI76_RS13340at 2782.202 kb on - strand, within BWI76_RS13340at 2782.210 kb on - strand, within BWI76_RS13340at 2782.372 kb on + strand, within BWI76_RS13340at 2782.469 kb on - strand, within BWI76_RS13340at 2782.486 kb on - strand, within BWI76_RS13340at 2782.492 kb on - strand, within BWI76_RS13340at 2782.524 kb on - strand, within BWI76_RS13340at 2782.564 kb on + strand, within BWI76_RS13340at 2782.572 kb on - strand, within BWI76_RS13340at 2782.608 kb on + strand, within BWI76_RS13340at 2782.611 kb on - strand, within BWI76_RS13340at 2782.611 kb on - strand, within BWI76_RS13340at 2782.681 kb on - strand, within BWI76_RS13340at 2782.731 kb on + strand, within BWI76_RS13340at 2782.819 kb on - strand, within BWI76_RS13340at 2782.839 kb on - strand, within BWI76_RS13340at 2782.899 kb on + strand, within BWI76_RS13340at 2782.899 kb on + strand, within BWI76_RS13340at 2782.899 kb on + strand, within BWI76_RS13340at 2782.907 kb on - strand, within BWI76_RS13340at 2782.907 kb on - strand, within BWI76_RS13340at 2782.907 kb on - strand, within BWI76_RS13340at 2783.003 kb on + strand, within BWI76_RS13340at 2783.064 kb on - strand, within BWI76_RS13340at 2783.160 kb on - strand, within BWI76_RS13340at 2783.160 kb on - strand, within BWI76_RS13340at 2783.222 kb on - strand, within BWI76_RS13340at 2783.222 kb on - strand, within BWI76_RS13340at 2783.249 kb on - strand, within BWI76_RS13340at 2783.272 kb on + strand, within BWI76_RS13340at 2783.284 kb on - strand, within BWI76_RS13340at 2783.349 kb on + strand, within BWI76_RS13340at 2783.349 kb on + strand, within BWI76_RS13340at 2783.349 kb on + strand, within BWI76_RS13340at 2783.437 kb on + strandat 2783.442 kb on + strandat 2783.450 kb on - strandat 2783.450 kb on - strandat 2783.458 kb on + strandat 2783.462 kb on + strandat 2783.462 kb on + strandat 2783.463 kb on + strandat 2783.470 kb on - strandat 2783.473 kb on + strandat 2783.473 kb on + strandat 2783.473 kb on + strandat 2783.473 kb on + strandat 2783.481 kb on - strandat 2783.481 kb on - strandat 2783.481 kb on - strandat 2783.527 kb on + strandat 2783.527 kb on + strandat 2783.528 kb on - strandat 2783.675 kb on - strandat 2783.686 kb on + strandat 2783.717 kb on + strandat 2783.723 kb on + strandat 2783.725 kb on - strandat 2783.877 kb on + strand, within BWI76_RS13345at 2783.877 kb on + strand, within BWI76_RS13345at 2783.877 kb on + strand, within BWI76_RS13345at 2783.885 kb on - strand, within BWI76_RS13345at 2783.887 kb on + strand, within BWI76_RS13345at 2783.949 kb on + strand, within BWI76_RS13345at 2783.949 kb on + strand, within BWI76_RS13345at 2783.957 kb on - strand, within BWI76_RS13345at 2783.973 kb on + strand, within BWI76_RS13345at 2783.974 kb on - strand, within BWI76_RS13345at 2784.018 kb on + strand, within BWI76_RS13345at 2784.082 kb on - strand, within BWI76_RS13345at 2784.298 kb on - strand, within BWI76_RS13345at 2784.569 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
remove
2,780,999 - BWI76_RS13335 0.28 +0.5
2,781,008 + BWI76_RS13335 0.29 -1.0
2,781,340 - BWI76_RS13335 0.56 +0.1
2,781,475 - BWI76_RS13335 0.67 +0.5
2,781,532 - BWI76_RS13335 0.71 -0.5
2,781,578 - BWI76_RS13335 0.75 -0.8
2,781,629 - BWI76_RS13335 0.79 +0.7
2,781,867 + +1.2
2,781,884 + -1.3
2,781,892 - -0.0
2,782,016 - +1.1
2,782,125 - -0.3
2,782,126 - -0.4
2,782,128 - -0.0
2,782,137 + +0.3
2,782,144 + +0.2
2,782,144 + +0.1
2,782,145 - -1.2
2,782,145 - -0.1
2,782,160 + BWI76_RS13340 0.10 -1.2
2,782,194 + BWI76_RS13340 0.12 -0.0
2,782,202 - BWI76_RS13340 0.13 +0.9
2,782,202 - BWI76_RS13340 0.13 -1.2
2,782,210 - BWI76_RS13340 0.13 +0.2
2,782,372 + BWI76_RS13340 0.23 +0.0
2,782,469 - BWI76_RS13340 0.30 +0.6
2,782,486 - BWI76_RS13340 0.31 -1.5
2,782,492 - BWI76_RS13340 0.31 +0.9
2,782,524 - BWI76_RS13340 0.33 +1.7
2,782,564 + BWI76_RS13340 0.36 -0.2
2,782,572 - BWI76_RS13340 0.36 -0.0
2,782,608 + BWI76_RS13340 0.38 +0.3
2,782,611 - BWI76_RS13340 0.38 +1.0
2,782,611 - BWI76_RS13340 0.38 -0.9
2,782,681 - BWI76_RS13340 0.43 +0.9
2,782,731 + BWI76_RS13340 0.46 -0.6
2,782,819 - BWI76_RS13340 0.52 +0.9
2,782,839 - BWI76_RS13340 0.53 -0.6
2,782,899 + BWI76_RS13340 0.57 -0.9
2,782,899 + BWI76_RS13340 0.57 -0.1
2,782,899 + BWI76_RS13340 0.57 +0.2
2,782,907 - BWI76_RS13340 0.57 -0.8
2,782,907 - BWI76_RS13340 0.57 -0.3
2,782,907 - BWI76_RS13340 0.57 -0.1
2,783,003 + BWI76_RS13340 0.63 +0.0
2,783,064 - BWI76_RS13340 0.67 +0.1
2,783,160 - BWI76_RS13340 0.73 +0.5
2,783,160 - BWI76_RS13340 0.73 +0.2
2,783,222 - BWI76_RS13340 0.77 -2.9
2,783,222 - BWI76_RS13340 0.77 +0.4
2,783,249 - BWI76_RS13340 0.79 -0.4
2,783,272 + BWI76_RS13340 0.80 -0.7
2,783,284 - BWI76_RS13340 0.81 -0.8
2,783,349 + BWI76_RS13340 0.85 +0.3
2,783,349 + BWI76_RS13340 0.85 +0.6
2,783,349 + BWI76_RS13340 0.85 +0.0
2,783,437 + +0.0
2,783,442 + +0.3
2,783,450 - -0.1
2,783,450 - -0.9
2,783,458 + +0.3
2,783,462 + -0.1
2,783,462 + -1.6
2,783,463 + -0.3
2,783,470 - -0.3
2,783,473 + +0.7
2,783,473 + +1.8
2,783,473 + +0.6
2,783,473 + -0.2
2,783,481 - -0.8
2,783,481 - +1.6
2,783,481 - +0.2
2,783,527 + +0.6
2,783,527 + -0.2
2,783,528 - -0.8
2,783,675 - -0.1
2,783,686 + -0.7
2,783,717 + -0.1
2,783,723 + +1.2
2,783,725 - -0.5
2,783,877 + BWI76_RS13345 0.22 +0.6
2,783,877 + BWI76_RS13345 0.22 +0.6
2,783,877 + BWI76_RS13345 0.22 -0.1
2,783,885 - BWI76_RS13345 0.23 +0.7
2,783,887 + BWI76_RS13345 0.24 -0.1
2,783,949 + BWI76_RS13345 0.33 -0.4
2,783,949 + BWI76_RS13345 0.33 -0.3
2,783,957 - BWI76_RS13345 0.34 -0.4
2,783,973 + BWI76_RS13345 0.36 -0.4
2,783,974 - BWI76_RS13345 0.37 +0.7
2,784,018 + BWI76_RS13345 0.43 -0.1
2,784,082 - BWI76_RS13345 0.53 -0.9
2,784,298 - BWI76_RS13345 0.85 +0.0
2,784,569 + -0.1

Or see this region's nucleotide sequence