Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09325

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09305 and BWI76_RS09310 overlap by 4 nucleotidesBWI76_RS09310 and BWI76_RS09315 overlap by 71 nucleotidesBWI76_RS09315 and BWI76_RS09320 overlap by 38 nucleotidesBWI76_RS09320 and BWI76_RS09325 overlap by 8 nucleotidesBWI76_RS09325 and BWI76_RS09330 are separated by 68 nucleotidesBWI76_RS09330 and BWI76_RS09335 overlap by 4 nucleotidesBWI76_RS09335 and BWI76_RS09340 overlap by 14 nucleotides BWI76_RS09305: BWI76_RS09305 - hypothetical protein, at 1,957,092 to 1,957,475 _RS09305 BWI76_RS09310: BWI76_RS09310 - hypothetical protein, at 1,957,472 to 1,957,900 _RS09310 BWI76_RS09315: BWI76_RS09315 - hypothetical protein, at 1,957,830 to 1,958,033 _RS09315 BWI76_RS09320: BWI76_RS09320 - P2 phage tail completion protein R, at 1,957,996 to 1,958,427 _RS09320 BWI76_RS09325: BWI76_RS09325 - putative bacteriophage tail completion protein, at 1,958,420 to 1,958,866 _RS09325 BWI76_RS09330: BWI76_RS09330 - baseplate assembly protein V, at 1,958,935 to 1,959,507 _RS09330 BWI76_RS09335: BWI76_RS09335 - baseplate assembly protein W, at 1,959,504 to 1,959,866 _RS09335 BWI76_RS09340: BWI76_RS09340 - baseplate assembly protein J, at 1,959,853 to 1,960,761 _RS09340 Position (kb) 1958 1959Strain fitness (log2 ratio) -1 0 1at 1957.650 kb on - strand, within BWI76_RS09310at 1957.728 kb on - strand, within BWI76_RS09310at 1957.922 kb on + strand, within BWI76_RS09315at 1957.928 kb on + strand, within BWI76_RS09315at 1958.005 kb on + strandat 1958.055 kb on - strand, within BWI76_RS09320at 1958.123 kb on + strand, within BWI76_RS09320at 1958.129 kb on - strand, within BWI76_RS09320at 1958.149 kb on - strand, within BWI76_RS09320at 1958.240 kb on + strand, within BWI76_RS09320at 1958.316 kb on - strand, within BWI76_RS09320at 1958.364 kb on - strand, within BWI76_RS09320at 1958.446 kb on - strandat 1958.469 kb on + strand, within BWI76_RS09325at 1958.476 kb on - strand, within BWI76_RS09325at 1958.602 kb on + strand, within BWI76_RS09325at 1958.769 kb on + strand, within BWI76_RS09325at 1959.352 kb on + strand, within BWI76_RS09330at 1959.433 kb on + strand, within BWI76_RS09330at 1959.775 kb on + strand, within BWI76_RS09335

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,957,650 - BWI76_RS09310 0.41 -0.0
1,957,728 - BWI76_RS09310 0.60 +0.4
1,957,922 + BWI76_RS09315 0.45 -0.7
1,957,928 + BWI76_RS09315 0.48 +0.0
1,958,005 + +0.0
1,958,055 - BWI76_RS09320 0.14 -0.3
1,958,123 + BWI76_RS09320 0.29 +0.4
1,958,129 - BWI76_RS09320 0.31 -1.0
1,958,149 - BWI76_RS09320 0.35 -0.5
1,958,240 + BWI76_RS09320 0.56 -1.7
1,958,316 - BWI76_RS09320 0.74 -0.2
1,958,364 - BWI76_RS09320 0.85 -0.4
1,958,446 - -0.0
1,958,469 + BWI76_RS09325 0.11 -0.9
1,958,476 - BWI76_RS09325 0.13 +0.3
1,958,602 + BWI76_RS09325 0.41 -0.8
1,958,769 + BWI76_RS09325 0.78 -0.0
1,959,352 + BWI76_RS09330 0.73 +0.3
1,959,433 + BWI76_RS09330 0.87 -0.2
1,959,775 + BWI76_RS09335 0.75 +0.6

Or see this region's nucleotide sequence