Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04235 and BWI76_RS04240 are separated by 212 nucleotides BWI76_RS04240 and BWI76_RS04245 are separated by 81 nucleotides BWI76_RS04245 and BWI76_RS04250 are separated by 1 nucleotides BWI76_RS04250 and BWI76_RS04255 are separated by 3 nucleotides
BWI76_RS04235: BWI76_RS04235 - tRNA/rRNA methyltransferase, at 871,476 to 872,162
_RS04235
BWI76_RS04240: BWI76_RS04240 - thr operon leader peptide, at 872,375 to 872,443
_RS04240
BWI76_RS04245: BWI76_RS04245 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 872,525 to 874,987
_RS04245
BWI76_RS04250: BWI76_RS04250 - homoserine kinase, at 874,989 to 875,918
_RS04250
BWI76_RS04255: BWI76_RS04255 - threonine synthase, at 875,922 to 877,202
_RS04255
Position (kb) 872
873
874
875 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 871.620 kb on - strand, within BWI76_RS04235 at 871.624 kb on + strand, within BWI76_RS04235 at 871.632 kb on - strand, within BWI76_RS04235 at 871.784 kb on + strand, within BWI76_RS04235 at 871.868 kb on - strand, within BWI76_RS04235 at 871.870 kb on - strand, within BWI76_RS04235 at 871.886 kb on + strand, within BWI76_RS04235 at 871.903 kb on + strand, within BWI76_RS04235 at 871.903 kb on + strand, within BWI76_RS04235 at 871.911 kb on - strand, within BWI76_RS04235 at 871.930 kb on - strand, within BWI76_RS04235 at 872.053 kb on + strand, within BWI76_RS04235 at 872.061 kb on - strand, within BWI76_RS04235 at 872.061 kb on - strand, within BWI76_RS04235 at 872.071 kb on + strand, within BWI76_RS04235 at 872.079 kb on - strand, within BWI76_RS04235 at 872.110 kb on + strand at 872.110 kb on + strand at 872.118 kb on + strand at 872.123 kb on - strand at 872.337 kb on + strand at 872.362 kb on + strand at 872.368 kb on - strand at 872.433 kb on - strand, within BWI76_RS04240 at 872.433 kb on - strand, within BWI76_RS04240 at 872.473 kb on + strand at 872.473 kb on + strand at 872.473 kb on + strand at 872.475 kb on + strand at 872.475 kb on + strand at 872.481 kb on - strand at 872.515 kb on + strand at 872.612 kb on - strand at 872.625 kb on + strand at 872.754 kb on - strand at 872.844 kb on + strand, within BWI76_RS04245 at 872.844 kb on + strand, within BWI76_RS04245 at 872.844 kb on + strand, within BWI76_RS04245 at 872.844 kb on + strand, within BWI76_RS04245 at 872.852 kb on - strand, within BWI76_RS04245 at 872.852 kb on - strand, within BWI76_RS04245 at 872.852 kb on - strand, within BWI76_RS04245 at 872.852 kb on - strand, within BWI76_RS04245 at 872.852 kb on - strand, within BWI76_RS04245 at 872.882 kb on - strand, within BWI76_RS04245 at 872.935 kb on + strand, within BWI76_RS04245 at 873.226 kb on - strand, within BWI76_RS04245 at 873.292 kb on - strand, within BWI76_RS04245 at 873.295 kb on + strand, within BWI76_RS04245 at 873.592 kb on - strand, within BWI76_RS04245 at 873.696 kb on + strand, within BWI76_RS04245 at 873.740 kb on - strand, within BWI76_RS04245 at 873.779 kb on + strand, within BWI76_RS04245 at 873.779 kb on + strand, within BWI76_RS04245 at 873.787 kb on - strand, within BWI76_RS04245 at 873.815 kb on + strand, within BWI76_RS04245 at 873.909 kb on - strand, within BWI76_RS04245 at 873.916 kb on + strand, within BWI76_RS04245 at 874.039 kb on + strand, within BWI76_RS04245 at 874.039 kb on + strand, within BWI76_RS04245 at 874.082 kb on - strand, within BWI76_RS04245 at 874.282 kb on + strand, within BWI76_RS04245 at 874.290 kb on + strand, within BWI76_RS04245 at 874.435 kb on - strand, within BWI76_RS04245 at 874.480 kb on - strand, within BWI76_RS04245 at 874.490 kb on - strand, within BWI76_RS04245 at 874.654 kb on - strand, within BWI76_RS04245 at 874.675 kb on - strand, within BWI76_RS04245 at 874.905 kb on + strand at 874.949 kb on + strand at 875.101 kb on - strand, within BWI76_RS04250 at 875.266 kb on + strand, within BWI76_RS04250 at 875.274 kb on - strand, within BWI76_RS04250 at 875.422 kb on - strand, within BWI76_RS04250 at 875.516 kb on - strand, within BWI76_RS04250 at 875.539 kb on - strand at 875.587 kb on + strand, within BWI76_RS04250 at 875.595 kb on - strand, within BWI76_RS04250 at 875.599 kb on + strand, within BWI76_RS04250 at 875.615 kb on - strand, within BWI76_RS04250 at 875.846 kb on - strand at 875.962 kb on + strand at 875.965 kb on - strand at 875.970 kb on - strand at 875.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 871,620 - BWI76_RS04235 0.21 +0.9 871,624 + BWI76_RS04235 0.22 -0.3 871,632 - BWI76_RS04235 0.23 +1.5 871,784 + BWI76_RS04235 0.45 -1.8 871,868 - BWI76_RS04235 0.57 +0.3 871,870 - BWI76_RS04235 0.57 -0.3 871,886 + BWI76_RS04235 0.60 -0.1 871,903 + BWI76_RS04235 0.62 +0.1 871,903 + BWI76_RS04235 0.62 -1.4 871,911 - BWI76_RS04235 0.63 -0.2 871,930 - BWI76_RS04235 0.66 +0.6 872,053 + BWI76_RS04235 0.84 -1.1 872,061 - BWI76_RS04235 0.85 +0.4 872,061 - BWI76_RS04235 0.85 +0.5 872,071 + BWI76_RS04235 0.87 +0.2 872,079 - BWI76_RS04235 0.88 -0.1 872,110 + -0.3 872,110 + +0.5 872,118 + +1.3 872,123 - -0.2 872,337 + -0.8 872,362 + -3.7 872,368 - +1.3 872,433 - BWI76_RS04240 0.84 -4.2 872,433 - BWI76_RS04240 0.84 -1.7 872,473 + +1.6 872,473 + -1.5 872,473 + +1.1 872,475 + +0.9 872,475 + +0.3 872,481 - -1.2 872,515 + -2.5 872,612 - -3.8 872,625 + -3.7 872,754 - -5.1 872,844 + BWI76_RS04245 0.13 -5.6 872,844 + BWI76_RS04245 0.13 -0.8 872,844 + BWI76_RS04245 0.13 -3.7 872,844 + BWI76_RS04245 0.13 -5.4 872,852 - BWI76_RS04245 0.13 -3.0 872,852 - BWI76_RS04245 0.13 -5.5 872,852 - BWI76_RS04245 0.13 -2.7 872,852 - BWI76_RS04245 0.13 -2.1 872,852 - BWI76_RS04245 0.13 -2.8 872,882 - BWI76_RS04245 0.14 -3.5 872,935 + BWI76_RS04245 0.17 -1.5 873,226 - BWI76_RS04245 0.28 +2.3 873,292 - BWI76_RS04245 0.31 -5.3 873,295 + BWI76_RS04245 0.31 -5.1 873,592 - BWI76_RS04245 0.43 -3.4 873,696 + BWI76_RS04245 0.48 -2.7 873,740 - BWI76_RS04245 0.49 -4.4 873,779 + BWI76_RS04245 0.51 -2.7 873,779 + BWI76_RS04245 0.51 -3.2 873,787 - BWI76_RS04245 0.51 -3.9 873,815 + BWI76_RS04245 0.52 -5.1 873,909 - BWI76_RS04245 0.56 -1.6 873,916 + BWI76_RS04245 0.56 -2.6 874,039 + BWI76_RS04245 0.61 -3.4 874,039 + BWI76_RS04245 0.61 -4.6 874,082 - BWI76_RS04245 0.63 -2.9 874,282 + BWI76_RS04245 0.71 -5.4 874,290 + BWI76_RS04245 0.72 -2.6 874,435 - BWI76_RS04245 0.78 -3.4 874,480 - BWI76_RS04245 0.79 -5.7 874,490 - BWI76_RS04245 0.80 -1.5 874,654 - BWI76_RS04245 0.86 -3.7 874,675 - BWI76_RS04245 0.87 -6.2 874,905 + -3.4 874,949 + -3.6 875,101 - BWI76_RS04250 0.12 -4.7 875,266 + BWI76_RS04250 0.30 -3.9 875,274 - BWI76_RS04250 0.31 -4.4 875,422 - BWI76_RS04250 0.47 -3.8 875,516 - BWI76_RS04250 0.57 -4.9 875,539 - +1.3 875,587 + BWI76_RS04250 0.64 -3.8 875,595 - BWI76_RS04250 0.65 -3.2 875,599 + BWI76_RS04250 0.66 -4.5 875,615 - BWI76_RS04250 0.67 -2.2 875,846 - -4.9 875,962 + -4.8 875,965 - -2.2 875,970 - -2.4 875,987 - -4.2
Or see this region's nucleotide sequence