Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25330

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25320 and AO353_25325 overlap by 7 nucleotidesAO353_25325 and AO353_25330 overlap by 4 nucleotidesAO353_25330 and AO353_25335 overlap by 8 nucleotidesAO353_25335 and AO353_25340 overlap by 1 nucleotides AO353_25320: AO353_25320 - phosphoribosyl-dephospho-CoA transferase, at 5,585,421 to 5,586,041 _25320 AO353_25325: AO353_25325 - biotin-independent malonate decarboxylase subunit gamma, at 5,586,035 to 5,586,838 _25325 AO353_25330: AO353_25330 - biotin-independent malonate decarboxylase subunit beta, at 5,586,835 to 5,587,686 _25330 AO353_25335: AO353_25335 - malonate decarboxylase acyl carrier protein, at 5,587,679 to 5,587,978 _25335 AO353_25340: AO353_25340 - triphosphoribosyl-dephospho-CoA synthase MdcB, at 5,587,978 to 5,588,853 _25340 Position (kb) 5586 5587 5588Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5585.858 kb on - strand, within AO353_25320at 5585.858 kb on - strand, within AO353_25320at 5585.858 kb on - strand, within AO353_25320at 5585.883 kb on + strand, within AO353_25320at 5585.883 kb on + strand, within AO353_25320at 5585.883 kb on + strand, within AO353_25320at 5585.884 kb on - strand, within AO353_25320at 5585.884 kb on - strand, within AO353_25320at 5586.150 kb on - strand, within AO353_25325at 5586.240 kb on + strand, within AO353_25325at 5586.240 kb on + strand, within AO353_25325at 5586.240 kb on + strand, within AO353_25325at 5586.240 kb on + strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strand, within AO353_25325at 5586.241 kb on - strandat 5586.255 kb on + strand, within AO353_25325at 5586.256 kb on - strand, within AO353_25325at 5586.477 kb on + strand, within AO353_25325at 5586.477 kb on + strand, within AO353_25325at 5586.477 kb on + strand, within AO353_25325at 5586.477 kb on + strand, within AO353_25325at 5586.477 kb on + strand, within AO353_25325at 5586.477 kb on + strand, within AO353_25325at 5586.478 kb on - strand, within AO353_25325at 5586.478 kb on - strand, within AO353_25325at 5586.829 kb on - strandat 5586.829 kb on - strandat 5587.016 kb on + strand, within AO353_25330at 5587.016 kb on + strand, within AO353_25330at 5587.138 kb on - strand, within AO353_25330at 5587.168 kb on + strandat 5587.168 kb on + strand, within AO353_25330at 5587.168 kb on + strand, within AO353_25330at 5587.168 kb on + strand, within AO353_25330at 5587.169 kb on - strand, within AO353_25330at 5587.172 kb on + strandat 5587.172 kb on + strand, within AO353_25330at 5587.173 kb on - strand, within AO353_25330at 5587.173 kb on - strand, within AO353_25330at 5587.250 kb on + strand, within AO353_25330at 5587.251 kb on - strand, within AO353_25330at 5587.756 kb on + strand, within AO353_25335at 5587.889 kb on + strand, within AO353_25335at 5587.889 kb on + strand, within AO353_25335at 5587.968 kb on - strandat 5588.083 kb on + strand, within AO353_25340at 5588.083 kb on + strand, within AO353_25340at 5588.083 kb on + strand, within AO353_25340at 5588.083 kb on + strand, within AO353_25340at 5588.336 kb on - strand, within AO353_25340at 5588.370 kb on - strand, within AO353_25340at 5588.381 kb on - strand, within AO353_25340at 5588.637 kb on + strand, within AO353_25340at 5588.638 kb on - strand, within AO353_25340at 5588.638 kb on - strand, within AO353_25340at 5588.638 kb on - strand, within AO353_25340

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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5,585,858 - AO353_25320 0.70 +0.2
5,585,858 - AO353_25320 0.70 -2.0
5,585,858 - AO353_25320 0.70 -2.2
5,585,883 + AO353_25320 0.74 +0.2
5,585,883 + AO353_25320 0.74 -0.2
5,585,883 + AO353_25320 0.74 +0.2
5,585,884 - AO353_25320 0.75 +0.3
5,585,884 - AO353_25320 0.75 +0.5
5,586,150 - AO353_25325 0.14 -0.3
5,586,240 + AO353_25325 0.25 +1.5
5,586,240 + AO353_25325 0.25 -0.6
5,586,240 + AO353_25325 0.25 -0.3
5,586,240 + AO353_25325 0.25 -1.1
5,586,241 - AO353_25325 0.26 +1.0
5,586,241 - AO353_25325 0.26 -2.2
5,586,241 - AO353_25325 0.26 -2.1
5,586,241 - AO353_25325 0.26 -0.8
5,586,241 - AO353_25325 0.26 +0.1
5,586,241 - AO353_25325 0.26 +1.2
5,586,241 - AO353_25325 0.26 +0.9
5,586,241 - +2.7
5,586,255 + AO353_25325 0.27 -0.9
5,586,256 - AO353_25325 0.27 +1.5
5,586,477 + AO353_25325 0.55 -0.4
5,586,477 + AO353_25325 0.55 +1.5
5,586,477 + AO353_25325 0.55 +0.5
5,586,477 + AO353_25325 0.55 +1.1
5,586,477 + AO353_25325 0.55 +0.6
5,586,477 + AO353_25325 0.55 -1.0
5,586,478 - AO353_25325 0.55 -0.5
5,586,478 - AO353_25325 0.55 +0.1
5,586,829 - +0.2
5,586,829 - -0.4
5,587,016 + AO353_25330 0.21 +0.3
5,587,016 + AO353_25330 0.21 -1.4
5,587,138 - AO353_25330 0.36 -1.0
5,587,168 + +0.2
5,587,168 + AO353_25330 0.39 -0.3
5,587,168 + AO353_25330 0.39 -2.0
5,587,168 + AO353_25330 0.39 -0.5
5,587,169 - AO353_25330 0.39 +0.4
5,587,172 + +1.8
5,587,172 + AO353_25330 0.40 -1.4
5,587,173 - AO353_25330 0.40 +1.5
5,587,173 - AO353_25330 0.40 -3.0
5,587,250 + AO353_25330 0.49 -1.9
5,587,251 - AO353_25330 0.49 +1.5
5,587,756 + AO353_25335 0.26 -0.3
5,587,889 + AO353_25335 0.70 -0.6
5,587,889 + AO353_25335 0.70 +0.2
5,587,968 - -1.2
5,588,083 + AO353_25340 0.12 -0.4
5,588,083 + AO353_25340 0.12 +0.7
5,588,083 + AO353_25340 0.12 +0.1
5,588,083 + AO353_25340 0.12 +1.1
5,588,336 - AO353_25340 0.41 -0.7
5,588,370 - AO353_25340 0.45 -0.5
5,588,381 - AO353_25340 0.46 +1.2
5,588,637 + AO353_25340 0.75 +0.7
5,588,638 - AO353_25340 0.75 +1.5
5,588,638 - AO353_25340 0.75 -0.2
5,588,638 - AO353_25340 0.75 +0.9

Or see this region's nucleotide sequence