Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18285

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18275 and AO353_18280 are separated by 14 nucleotidesAO353_18280 and AO353_18285 are separated by 49 nucleotidesAO353_18285 and AO353_18290 are separated by 148 nucleotidesAO353_18290 and AO353_18295 are separated by 229 nucleotides AO353_18275: AO353_18275 - 3-oxoadipate enol-lactonase, at 4,029,914 to 4,030,717 _18275 AO353_18280: AO353_18280 - LysR family transcriptional regulator, at 4,030,732 to 4,031,655 _18280 AO353_18285: AO353_18285 - 3-phosphoglycerate kinase, at 4,031,705 to 4,032,019 _18285 AO353_18290: AO353_18290 - FMN-dependent NADH-azoreductase, at 4,032,168 to 4,032,767 _18290 AO353_18295: AO353_18295 - hypothetical protein, at 4,032,997 to 4,033,866 _18295 Position (kb) 4031 4032 4033Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4030.710 kb on + strandat 4030.710 kb on + strandat 4030.710 kb on + strandat 4030.711 kb on - strandat 4030.844 kb on + strand, within AO353_18280at 4030.844 kb on + strand, within AO353_18280at 4030.844 kb on + strand, within AO353_18280at 4030.845 kb on - strand, within AO353_18280at 4030.850 kb on + strand, within AO353_18280at 4030.850 kb on + strand, within AO353_18280at 4030.850 kb on + strandat 4030.850 kb on + strand, within AO353_18280at 4030.850 kb on + strand, within AO353_18280at 4030.850 kb on + strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.851 kb on - strand, within AO353_18280at 4030.902 kb on + strand, within AO353_18280at 4030.902 kb on + strand, within AO353_18280at 4030.902 kb on + strand, within AO353_18280at 4030.902 kb on + strand, within AO353_18280at 4030.902 kb on + strand, within AO353_18280at 4030.903 kb on - strand, within AO353_18280at 4031.158 kb on + strand, within AO353_18280at 4031.158 kb on + strand, within AO353_18280at 4031.159 kb on - strand, within AO353_18280at 4031.159 kb on - strand, within AO353_18280at 4031.257 kb on + strand, within AO353_18280at 4031.257 kb on + strand, within AO353_18280at 4031.257 kb on + strand, within AO353_18280at 4031.257 kb on + strand, within AO353_18280at 4031.257 kb on + strandat 4031.257 kb on + strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strandat 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.258 kb on - strand, within AO353_18280at 4031.388 kb on + strand, within AO353_18280at 4031.388 kb on + strand, within AO353_18280at 4031.389 kb on - strand, within AO353_18280at 4031.407 kb on + strand, within AO353_18280at 4031.408 kb on - strand, within AO353_18280at 4031.408 kb on - strand, within AO353_18280at 4031.408 kb on - strand, within AO353_18280at 4031.539 kb on - strand, within AO353_18280at 4031.539 kb on - strand, within AO353_18280at 4031.540 kb on + strand, within AO353_18280at 4031.540 kb on + strand, within AO353_18280at 4031.540 kb on + strand, within AO353_18280at 4031.540 kb on + strand, within AO353_18280at 4031.540 kb on + strandat 4031.540 kb on + strand, within AO353_18280at 4031.540 kb on + strand, within AO353_18280at 4031.540 kb on + strandat 4031.540 kb on + strand, within AO353_18280at 4031.541 kb on - strand, within AO353_18280at 4031.541 kb on - strand, within AO353_18280at 4031.541 kb on - strand, within AO353_18280at 4031.541 kb on - strand, within AO353_18280at 4031.541 kb on - strand, within AO353_18280at 4031.541 kb on - strand, within AO353_18280at 4031.614 kb on + strandat 4031.614 kb on + strandat 4031.614 kb on + strandat 4031.614 kb on + strandat 4031.614 kb on + strandat 4031.614 kb on + strandat 4031.615 kb on - strandat 4031.615 kb on - strandat 4031.674 kb on + strandat 4031.674 kb on + strandat 4031.674 kb on + strandat 4031.674 kb on + strandat 4031.675 kb on - strandat 4031.772 kb on + strand, within AO353_18285at 4031.772 kb on + strand, within AO353_18285at 4031.773 kb on - strand, within AO353_18285at 4031.804 kb on + strand, within AO353_18285at 4031.805 kb on - strand, within AO353_18285at 4031.843 kb on - strand, within AO353_18285at 4031.843 kb on - strand, within AO353_18285at 4031.915 kb on - strand, within AO353_18285at 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.990 kb on + strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4031.991 kb on - strandat 4032.017 kb on + strandat 4032.018 kb on - strandat 4032.018 kb on - strandat 4032.043 kb on + strandat 4032.043 kb on + strandat 4032.043 kb on + strandat 4032.044 kb on - strandat 4032.044 kb on - strandat 4032.044 kb on - strandat 4032.044 kb on - strandat 4032.044 kb on - strandat 4032.044 kb on - strandat 4032.087 kb on - strandat 4032.087 kb on - strandat 4032.087 kb on - strandat 4032.087 kb on - strandat 4032.119 kb on - strandat 4032.138 kb on + strandat 4032.138 kb on + strandat 4032.138 kb on + strandat 4032.138 kb on + strandat 4032.138 kb on + strandat 4032.138 kb on + strandat 4032.139 kb on - strandat 4032.139 kb on - strandat 4032.139 kb on - strandat 4032.139 kb on - strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.160 kb on + strandat 4032.161 kb on - strandat 4032.161 kb on - strandat 4032.161 kb on - strandat 4032.161 kb on - strandat 4032.161 kb on - strandat 4032.161 kb on - strandat 4032.161 kb on - strandat 4032.456 kb on + strand, within AO353_18290at 4032.456 kb on + strand, within AO353_18290at 4032.457 kb on - strand, within AO353_18290at 4032.457 kb on - strand, within AO353_18290at 4032.457 kb on - strand, within AO353_18290at 4032.457 kb on - strand, within AO353_18290at 4032.457 kb on - strand, within AO353_18290at 4032.528 kb on + strand, within AO353_18290at 4032.528 kb on + strand, within AO353_18290at 4032.528 kb on + strand, within AO353_18290at 4032.528 kb on + strand, within AO353_18290at 4032.528 kb on + strand, within AO353_18290at 4032.529 kb on - strandat 4032.529 kb on - strand, within AO353_18290at 4032.529 kb on - strand, within AO353_18290at 4032.529 kb on - strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.573 kb on + strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.574 kb on - strand, within AO353_18290at 4032.600 kb on + strand, within AO353_18290at 4032.600 kb on + strand, within AO353_18290at 4032.601 kb on - strand, within AO353_18290at 4032.601 kb on - strand, within AO353_18290at 4032.601 kb on - strand, within AO353_18290at 4032.601 kb on - strand, within AO353_18290at 4032.633 kb on + strand, within AO353_18290at 4032.633 kb on + strand, within AO353_18290at 4032.634 kb on - strand, within AO353_18290at 4032.680 kb on + strand, within AO353_18290at 4032.680 kb on + strand, within AO353_18290at 4032.680 kb on + strand, within AO353_18290at 4032.680 kb on + strand, within AO353_18290at 4032.681 kb on - strand, within AO353_18290at 4032.681 kb on - strand, within AO353_18290at 4032.681 kb on - strand, within AO353_18290at 4032.681 kb on - strand, within AO353_18290at 4032.784 kb on + strandat 4032.784 kb on + strandat 4032.799 kb on + strandat 4032.799 kb on + strandat 4032.799 kb on + strandat 4032.799 kb on + strandat 4032.799 kb on + strandat 4032.799 kb on + strandat 4032.799 kb on + strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.800 kb on - strandat 4032.803 kb on + strandat 4032.803 kb on + strandat 4032.803 kb on + strandat 4032.803 kb on + strandat 4032.804 kb on - strandat 4032.804 kb on - strandat 4032.804 kb on - strandat 4032.804 kb on - strandat 4032.804 kb on - strandat 4032.929 kb on + strandat 4032.930 kb on - strandat 4032.930 kb on - strandat 4033.003 kb on + strandat 4033.004 kb on - strandat 4033.004 kb on - strandat 4033.007 kb on + strandat 4033.007 kb on + strandat 4033.008 kb on - strandat 4033.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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4,030,710 + -2.6
4,030,710 + -0.1
4,030,710 + -0.1
4,030,711 - -1.3
4,030,844 + AO353_18280 0.12 -0.3
4,030,844 + AO353_18280 0.12 +0.5
4,030,844 + AO353_18280 0.12 -0.3
4,030,845 - AO353_18280 0.12 -2.0
4,030,850 + AO353_18280 0.13 +0.2
4,030,850 + AO353_18280 0.13 -0.0
4,030,850 + +2.1
4,030,850 + AO353_18280 0.13 -0.9
4,030,850 + AO353_18280 0.13 +0.4
4,030,850 + AO353_18280 0.13 -0.3
4,030,851 - AO353_18280 0.13 -0.3
4,030,851 - AO353_18280 0.13 +0.7
4,030,851 - AO353_18280 0.13 +1.2
4,030,851 - AO353_18280 0.13 +1.8
4,030,851 - AO353_18280 0.13 -0.0
4,030,851 - AO353_18280 0.13 +0.5
4,030,851 - AO353_18280 0.13 +0.1
4,030,851 - AO353_18280 0.13 +0.4
4,030,851 - AO353_18280 0.13 -0.3
4,030,902 + AO353_18280 0.18 -0.7
4,030,902 + AO353_18280 0.18 -0.3
4,030,902 + AO353_18280 0.18 -0.3
4,030,902 + AO353_18280 0.18 +1.1
4,030,902 + AO353_18280 0.18 -0.7
4,030,903 - AO353_18280 0.19 +1.6
4,031,158 + AO353_18280 0.46 +0.3
4,031,158 + AO353_18280 0.46 -0.5
4,031,159 - AO353_18280 0.46 -1.9
4,031,159 - AO353_18280 0.46 -2.0
4,031,257 + AO353_18280 0.57 +0.7
4,031,257 + AO353_18280 0.57 +1.1
4,031,257 + AO353_18280 0.57 +0.1
4,031,257 + AO353_18280 0.57 -0.4
4,031,257 + -0.7
4,031,257 + AO353_18280 0.57 +0.9
4,031,258 - AO353_18280 0.57 +0.5
4,031,258 - AO353_18280 0.57 -1.3
4,031,258 - +1.5
4,031,258 - AO353_18280 0.57 +0.6
4,031,258 - AO353_18280 0.57 +0.1
4,031,258 - AO353_18280 0.57 +0.1
4,031,258 - AO353_18280 0.57 -0.8
4,031,258 - AO353_18280 0.57 +0.4
4,031,258 - AO353_18280 0.57 -0.2
4,031,258 - AO353_18280 0.57 -0.2
4,031,388 + AO353_18280 0.71 -2.5
4,031,388 + AO353_18280 0.71 -0.3
4,031,389 - AO353_18280 0.71 -0.4
4,031,407 + AO353_18280 0.73 +1.1
4,031,408 - AO353_18280 0.73 +0.3
4,031,408 - AO353_18280 0.73 +0.1
4,031,408 - AO353_18280 0.73 +1.1
4,031,539 - AO353_18280 0.87 -1.7
4,031,539 - AO353_18280 0.87 -0.5
4,031,540 + AO353_18280 0.87 +0.4
4,031,540 + AO353_18280 0.87 -1.7
4,031,540 + AO353_18280 0.87 -2.6
4,031,540 + AO353_18280 0.87 -0.8
4,031,540 + +0.6
4,031,540 + AO353_18280 0.87 -0.8
4,031,540 + AO353_18280 0.87 -0.6
4,031,540 + -0.7
4,031,540 + AO353_18280 0.87 -1.8
4,031,541 - AO353_18280 0.88 +0.5
4,031,541 - AO353_18280 0.88 +0.4
4,031,541 - AO353_18280 0.88 +1.0
4,031,541 - AO353_18280 0.88 -0.9
4,031,541 - AO353_18280 0.88 -0.9
4,031,541 - AO353_18280 0.88 -0.6
4,031,614 + -1.0
4,031,614 + +0.8
4,031,614 + -0.7
4,031,614 + +0.9
4,031,614 + -0.6
4,031,614 + +0.6
4,031,615 - +0.7
4,031,615 - -0.3
4,031,674 + -1.8
4,031,674 + -1.8
4,031,674 + -0.6
4,031,674 + +0.2
4,031,675 - +0.2
4,031,772 + AO353_18285 0.21 -1.1
4,031,772 + AO353_18285 0.21 -0.9
4,031,773 - AO353_18285 0.22 -1.0
4,031,804 + AO353_18285 0.31 -1.1
4,031,805 - AO353_18285 0.32 -0.5
4,031,843 - AO353_18285 0.44 +0.6
4,031,843 - AO353_18285 0.44 -1.5
4,031,915 - AO353_18285 0.67 -2.3
4,031,990 + +0.4
4,031,990 + -0.4
4,031,990 + +1.6
4,031,990 + -0.7
4,031,990 + -0.5
4,031,990 + -0.3
4,031,990 + +0.2
4,031,990 + -0.7
4,031,990 + -0.3
4,031,991 - +1.6
4,031,991 - -1.2
4,031,991 - -1.7
4,031,991 - +1.6
4,031,991 - -0.7
4,031,991 - -0.5
4,031,991 - +0.9
4,031,991 - -0.1
4,031,991 - +2.1
4,031,991 - -0.4
4,032,017 + -0.7
4,032,018 - +0.1
4,032,018 - +0.5
4,032,043 + +1.1
4,032,043 + +0.9
4,032,043 + -1.1
4,032,044 - +0.3
4,032,044 - -0.0
4,032,044 - +0.1
4,032,044 - -0.2
4,032,044 - -0.5
4,032,044 - -0.4
4,032,087 - +0.1
4,032,087 - -0.2
4,032,087 - -0.6
4,032,087 - -1.2
4,032,119 - +0.6
4,032,138 + +0.4
4,032,138 + +0.5
4,032,138 + +0.9
4,032,138 + +0.5
4,032,138 + -1.6
4,032,138 + -0.9
4,032,139 - -0.5
4,032,139 - -0.1
4,032,139 - -0.7
4,032,139 - +1.4
4,032,160 + -0.8
4,032,160 + +0.7
4,032,160 + +0.4
4,032,160 + -0.8
4,032,160 + +0.5
4,032,160 + -0.4
4,032,160 + -1.3
4,032,160 + +0.2
4,032,160 + -1.3
4,032,161 - -0.9
4,032,161 - +0.6
4,032,161 - -0.9
4,032,161 - +0.6
4,032,161 - +0.1
4,032,161 - -0.7
4,032,161 - -0.8
4,032,456 + AO353_18290 0.48 +0.2
4,032,456 + AO353_18290 0.48 -0.8
4,032,457 - AO353_18290 0.48 +0.3
4,032,457 - AO353_18290 0.48 -1.3
4,032,457 - AO353_18290 0.48 -0.7
4,032,457 - AO353_18290 0.48 +0.4
4,032,457 - AO353_18290 0.48 -0.6
4,032,528 + AO353_18290 0.60 -0.7
4,032,528 + AO353_18290 0.60 +0.1
4,032,528 + AO353_18290 0.60 -0.1
4,032,528 + AO353_18290 0.60 -0.7
4,032,528 + AO353_18290 0.60 -0.1
4,032,529 - +0.5
4,032,529 - AO353_18290 0.60 +0.8
4,032,529 - AO353_18290 0.60 -0.9
4,032,529 - AO353_18290 0.60 +1.1
4,032,573 + AO353_18290 0.68 -3.0
4,032,573 + AO353_18290 0.68 +0.7
4,032,573 + AO353_18290 0.68 -2.4
4,032,573 + AO353_18290 0.68 +1.0
4,032,573 + AO353_18290 0.68 +2.4
4,032,573 + AO353_18290 0.68 -0.8
4,032,573 + AO353_18290 0.68 -1.1
4,032,573 + AO353_18290 0.68 +0.5
4,032,573 + AO353_18290 0.68 +0.2
4,032,573 + AO353_18290 0.68 -0.4
4,032,573 + AO353_18290 0.68 +0.3
4,032,573 + AO353_18290 0.68 -1.7
4,032,573 + AO353_18290 0.68 +0.5
4,032,573 + AO353_18290 0.68 +0.3
4,032,573 + AO353_18290 0.68 +1.1
4,032,573 + AO353_18290 0.68 +0.1
4,032,573 + AO353_18290 0.68 +1.1
4,032,574 - AO353_18290 0.68 -0.7
4,032,574 - AO353_18290 0.68 +0.3
4,032,574 - AO353_18290 0.68 -1.4
4,032,574 - AO353_18290 0.68 -1.4
4,032,574 - AO353_18290 0.68 -2.0
4,032,574 - AO353_18290 0.68 -0.4
4,032,574 - AO353_18290 0.68 -0.1
4,032,574 - AO353_18290 0.68 -1.2
4,032,574 - AO353_18290 0.68 -1.2
4,032,574 - AO353_18290 0.68 +0.5
4,032,574 - AO353_18290 0.68 +0.1
4,032,600 + AO353_18290 0.72 -0.2
4,032,600 + AO353_18290 0.72 +1.0
4,032,601 - AO353_18290 0.72 +0.3
4,032,601 - AO353_18290 0.72 -1.3
4,032,601 - AO353_18290 0.72 -0.8
4,032,601 - AO353_18290 0.72 +1.4
4,032,633 + AO353_18290 0.78 -0.3
4,032,633 + AO353_18290 0.78 -0.1
4,032,634 - AO353_18290 0.78 -0.3
4,032,680 + AO353_18290 0.85 -0.3
4,032,680 + AO353_18290 0.85 +1.3
4,032,680 + AO353_18290 0.85 -0.4
4,032,680 + AO353_18290 0.85 +0.9
4,032,681 - AO353_18290 0.85 -1.5
4,032,681 - AO353_18290 0.85 -1.3
4,032,681 - AO353_18290 0.85 -1.6
4,032,681 - AO353_18290 0.85 +2.1
4,032,784 + +0.4
4,032,784 + +0.1
4,032,799 + +0.8
4,032,799 + +0.1
4,032,799 + -0.8
4,032,799 + -0.1
4,032,799 + -0.4
4,032,799 + -1.6
4,032,799 + +0.1
4,032,800 - -0.0
4,032,800 - +0.3
4,032,800 - -1.6
4,032,800 - -0.2
4,032,800 - -0.3
4,032,800 - -0.5
4,032,800 - -1.3
4,032,800 - -1.3
4,032,803 + +0.2
4,032,803 + +0.5
4,032,803 + -1.4
4,032,803 + -0.2
4,032,804 - -0.5
4,032,804 - -0.3
4,032,804 - -0.4
4,032,804 - -0.5
4,032,804 - +1.2
4,032,929 + -0.6
4,032,930 - +1.3
4,032,930 - -0.9
4,033,003 + +1.0
4,033,004 - -0.1
4,033,004 - -0.6
4,033,007 + -0.4
4,033,007 + -0.3
4,033,008 - -1.5
4,033,008 - +0.1

Or see this region's nucleotide sequence