Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17650

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17645 and AO353_17650 are separated by 97 nucleotidesAO353_17650 and AO353_17655 are separated by 31 nucleotides AO353_17645: AO353_17645 - peptidase M48, at 3,889,206 to 3,890,639 _17645 AO353_17650: AO353_17650 - response regulator SirA, at 3,890,737 to 3,890,976 _17650 AO353_17655: AO353_17655 - permease, at 3,891,008 to 3,892,078 _17655 Position (kb) 3890 3891Strain fitness (log2 ratio) -2 -1 0 1 2at 3889.740 kb on + strand, within AO353_17645at 3889.740 kb on + strand, within AO353_17645at 3889.740 kb on + strand, within AO353_17645at 3889.741 kb on - strand, within AO353_17645at 3889.741 kb on - strand, within AO353_17645at 3889.741 kb on - strand, within AO353_17645at 3889.741 kb on - strand, within AO353_17645at 3889.741 kb on - strand, within AO353_17645at 3889.741 kb on - strand, within AO353_17645at 3889.810 kb on + strand, within AO353_17645at 3889.810 kb on + strand, within AO353_17645at 3889.811 kb on - strand, within AO353_17645at 3889.816 kb on - strand, within AO353_17645at 3889.816 kb on - strand, within AO353_17645at 3889.816 kb on - strand, within AO353_17645at 3889.843 kb on + strand, within AO353_17645at 3889.843 kb on + strand, within AO353_17645at 3889.843 kb on + strand, within AO353_17645at 3889.843 kb on + strand, within AO353_17645at 3889.844 kb on - strand, within AO353_17645at 3889.844 kb on - strand, within AO353_17645at 3889.844 kb on - strand, within AO353_17645at 3889.844 kb on - strand, within AO353_17645at 3889.844 kb on - strand, within AO353_17645at 3890.046 kb on - strand, within AO353_17645at 3890.201 kb on + strand, within AO353_17645at 3890.201 kb on + strand, within AO353_17645at 3890.201 kb on + strand, within AO353_17645at 3890.202 kb on - strand, within AO353_17645at 3890.202 kb on - strand, within AO353_17645at 3890.278 kb on + strand, within AO353_17645at 3890.278 kb on + strand, within AO353_17645at 3890.278 kb on + strand, within AO353_17645at 3890.278 kb on + strand, within AO353_17645at 3890.423 kb on + strand, within AO353_17645at 3890.423 kb on + strand, within AO353_17645at 3890.423 kb on + strand, within AO353_17645at 3890.424 kb on - strand, within AO353_17645at 3890.425 kb on + strand, within AO353_17645at 3890.425 kb on + strand, within AO353_17645at 3890.425 kb on + strand, within AO353_17645at 3890.425 kb on + strand, within AO353_17645at 3890.426 kb on - strand, within AO353_17645at 3890.426 kb on - strand, within AO353_17645at 3890.426 kb on - strand, within AO353_17645at 3890.426 kb on - strand, within AO353_17645at 3890.443 kb on + strand, within AO353_17645at 3890.443 kb on + strand, within AO353_17645at 3890.443 kb on + strand, within AO353_17645at 3890.443 kb on + strand, within AO353_17645at 3890.443 kb on + strand, within AO353_17645at 3890.444 kb on - strand, within AO353_17645at 3890.518 kb on + strandat 3890.519 kb on - strandat 3890.519 kb on - strandat 3890.519 kb on - strandat 3890.667 kb on + strandat 3890.667 kb on + strandat 3890.667 kb on + strandat 3890.667 kb on + strandat 3890.667 kb on + strandat 3890.668 kb on - strandat 3890.668 kb on - strandat 3890.668 kb on - strandat 3890.668 kb on - strandat 3890.668 kb on - strandat 3890.699 kb on + strandat 3890.699 kb on + strandat 3890.699 kb on + strandat 3890.700 kb on - strandat 3890.700 kb on - strandat 3890.700 kb on - strandat 3890.700 kb on - strandat 3890.700 kb on - strandat 3890.704 kb on + strandat 3890.704 kb on + strandat 3890.704 kb on + strandat 3890.704 kb on + strandat 3890.705 kb on - strandat 3890.705 kb on - strandat 3890.751 kb on - strandat 3890.751 kb on - strandat 3890.751 kb on - strandat 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.916 kb on + strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3890.917 kb on - strand, within AO353_17650at 3891.003 kb on + strandat 3891.021 kb on + strandat 3891.041 kb on + strandat 3891.041 kb on + strandat 3891.041 kb on + strandat 3891.042 kb on - strandat 3891.042 kb on - strandat 3891.042 kb on - strandat 3891.042 kb on - strandat 3891.076 kb on - strandat 3891.087 kb on + strandat 3891.087 kb on + strandat 3891.088 kb on - strandat 3891.155 kb on + strand, within AO353_17655at 3891.156 kb on - strand, within AO353_17655at 3891.156 kb on - strand, within AO353_17655at 3891.179 kb on - strand, within AO353_17655at 3891.255 kb on + strand, within AO353_17655at 3891.255 kb on + strand, within AO353_17655at 3891.255 kb on + strand, within AO353_17655at 3891.256 kb on - strand, within AO353_17655at 3891.256 kb on - strand, within AO353_17655at 3891.256 kb on - strand, within AO353_17655at 3891.256 kb on - strand, within AO353_17655at 3891.256 kb on - strand, within AO353_17655at 3891.256 kb on - strand, within AO353_17655at 3891.500 kb on + strand, within AO353_17655at 3891.500 kb on + strand, within AO353_17655at 3891.500 kb on + strand, within AO353_17655at 3891.500 kb on + strand, within AO353_17655at 3891.500 kb on + strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.501 kb on - strand, within AO353_17655at 3891.575 kb on + strand, within AO353_17655at 3891.575 kb on + strand, within AO353_17655at 3891.576 kb on - strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.641 kb on + strand, within AO353_17655at 3891.642 kb on - strand, within AO353_17655at 3891.642 kb on - strand, within AO353_17655at 3891.642 kb on - strand, within AO353_17655at 3891.689 kb on + strand, within AO353_17655at 3891.689 kb on + strand, within AO353_17655at 3891.689 kb on + strand, within AO353_17655at 3891.689 kb on + strand, within AO353_17655at 3891.689 kb on + strand, within AO353_17655at 3891.690 kb on - strand, within AO353_17655at 3891.690 kb on - strand, within AO353_17655at 3891.719 kb on + strand, within AO353_17655at 3891.719 kb on + strand, within AO353_17655at 3891.719 kb on + strand, within AO353_17655at 3891.719 kb on + strand, within AO353_17655at 3891.719 kb on + strand, within AO353_17655at 3891.719 kb on + strand, within AO353_17655at 3891.720 kb on - strand, within AO353_17655at 3891.720 kb on - strand, within AO353_17655at 3891.720 kb on - strand, within AO353_17655at 3891.768 kb on - strand, within AO353_17655at 3891.845 kb on + strand, within AO353_17655at 3891.845 kb on + strand, within AO353_17655at 3891.845 kb on + strand, within AO353_17655at 3891.845 kb on + strand, within AO353_17655at 3891.845 kb on + strand, within AO353_17655at 3891.846 kb on - strand, within AO353_17655at 3891.861 kb on - strand, within AO353_17655at 3891.861 kb on - strand, within AO353_17655

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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3,889,740 + AO353_17645 0.37 +0.7
3,889,740 + AO353_17645 0.37 -1.8
3,889,740 + AO353_17645 0.37 -0.7
3,889,741 - AO353_17645 0.37 -1.6
3,889,741 - AO353_17645 0.37 -0.0
3,889,741 - AO353_17645 0.37 -0.3
3,889,741 - AO353_17645 0.37 +0.5
3,889,741 - AO353_17645 0.37 -0.1
3,889,741 - AO353_17645 0.37 -1.1
3,889,810 + AO353_17645 0.42 -0.2
3,889,810 + AO353_17645 0.42 +1.2
3,889,811 - AO353_17645 0.42 +0.1
3,889,816 - AO353_17645 0.43 -1.0
3,889,816 - AO353_17645 0.43 +0.6
3,889,816 - AO353_17645 0.43 +0.5
3,889,843 + AO353_17645 0.44 -0.5
3,889,843 + AO353_17645 0.44 +0.1
3,889,843 + AO353_17645 0.44 +1.5
3,889,843 + AO353_17645 0.44 -0.3
3,889,844 - AO353_17645 0.44 -1.1
3,889,844 - AO353_17645 0.44 -0.2
3,889,844 - AO353_17645 0.44 -0.2
3,889,844 - AO353_17645 0.44 -1.1
3,889,844 - AO353_17645 0.44 -0.5
3,890,046 - AO353_17645 0.59 -0.5
3,890,201 + AO353_17645 0.69 +0.1
3,890,201 + AO353_17645 0.69 +0.0
3,890,201 + AO353_17645 0.69 -0.1
3,890,202 - AO353_17645 0.69 -0.2
3,890,202 - AO353_17645 0.69 +0.5
3,890,278 + AO353_17645 0.75 -0.0
3,890,278 + AO353_17645 0.75 +0.7
3,890,278 + AO353_17645 0.75 +0.8
3,890,278 + AO353_17645 0.75 -1.3
3,890,423 + AO353_17645 0.85 +1.0
3,890,423 + AO353_17645 0.85 -1.0
3,890,423 + AO353_17645 0.85 -0.2
3,890,424 - AO353_17645 0.85 -1.2
3,890,425 + AO353_17645 0.85 +0.2
3,890,425 + AO353_17645 0.85 +1.1
3,890,425 + AO353_17645 0.85 -1.6
3,890,425 + AO353_17645 0.85 +0.5
3,890,426 - AO353_17645 0.85 +0.1
3,890,426 - AO353_17645 0.85 -1.6
3,890,426 - AO353_17645 0.85 -1.3
3,890,426 - AO353_17645 0.85 -0.2
3,890,443 + AO353_17645 0.86 -1.5
3,890,443 + AO353_17645 0.86 +1.5
3,890,443 + AO353_17645 0.86 +0.0
3,890,443 + AO353_17645 0.86 +1.5
3,890,443 + AO353_17645 0.86 +0.1
3,890,444 - AO353_17645 0.86 -2.1
3,890,518 + -1.3
3,890,519 - +0.8
3,890,519 - +0.5
3,890,519 - -1.2
3,890,667 + -0.3
3,890,667 + +0.0
3,890,667 + +1.1
3,890,667 + +0.8
3,890,667 + -0.5
3,890,668 - -0.3
3,890,668 - -0.0
3,890,668 - +0.5
3,890,668 - -1.0
3,890,668 - +1.0
3,890,699 + +0.0
3,890,699 + +0.6
3,890,699 + -0.7
3,890,700 - -0.0
3,890,700 - -0.3
3,890,700 - +0.5
3,890,700 - +0.7
3,890,700 - -0.0
3,890,704 + +0.4
3,890,704 + -0.4
3,890,704 + +0.2
3,890,704 + -1.8
3,890,705 - +0.3
3,890,705 - +1.9
3,890,751 - -0.7
3,890,751 - -0.6
3,890,751 - +1.6
3,890,916 + AO353_17650 0.75 -0.3
3,890,916 + AO353_17650 0.75 -1.4
3,890,916 + AO353_17650 0.75 -0.0
3,890,916 + AO353_17650 0.75 -0.5
3,890,916 + AO353_17650 0.75 +0.5
3,890,916 + AO353_17650 0.75 -1.2
3,890,916 + AO353_17650 0.75 +0.0
3,890,916 + AO353_17650 0.75 -0.7
3,890,917 - AO353_17650 0.75 -1.6
3,890,917 - AO353_17650 0.75 -1.7
3,890,917 - AO353_17650 0.75 -0.7
3,890,917 - AO353_17650 0.75 -0.9
3,890,917 - AO353_17650 0.75 -1.8
3,890,917 - AO353_17650 0.75 +1.5
3,890,917 - AO353_17650 0.75 +0.4
3,890,917 - AO353_17650 0.75 -1.0
3,890,917 - AO353_17650 0.75 -2.0
3,891,003 + +0.6
3,891,021 + +0.3
3,891,041 + -0.0
3,891,041 + +0.4
3,891,041 + +2.1
3,891,042 - -0.3
3,891,042 - -1.0
3,891,042 - +0.8
3,891,042 - -2.0
3,891,076 - +0.5
3,891,087 + +0.5
3,891,087 + -0.4
3,891,088 - +0.8
3,891,155 + AO353_17655 0.14 -0.4
3,891,156 - AO353_17655 0.14 -0.8
3,891,156 - AO353_17655 0.14 -0.9
3,891,179 - AO353_17655 0.16 -0.5
3,891,255 + AO353_17655 0.23 +1.5
3,891,255 + AO353_17655 0.23 -1.2
3,891,255 + AO353_17655 0.23 -0.4
3,891,256 - AO353_17655 0.23 -0.3
3,891,256 - AO353_17655 0.23 -0.7
3,891,256 - AO353_17655 0.23 -0.5
3,891,256 - AO353_17655 0.23 +0.5
3,891,256 - AO353_17655 0.23 +1.5
3,891,256 - AO353_17655 0.23 +0.7
3,891,500 + AO353_17655 0.46 -0.3
3,891,500 + AO353_17655 0.46 +0.3
3,891,500 + AO353_17655 0.46 +0.3
3,891,500 + AO353_17655 0.46 -0.5
3,891,500 + AO353_17655 0.46 +0.3
3,891,501 - AO353_17655 0.46 -0.0
3,891,501 - AO353_17655 0.46 -0.0
3,891,501 - AO353_17655 0.46 +1.3
3,891,501 - AO353_17655 0.46 +0.6
3,891,501 - AO353_17655 0.46 +0.5
3,891,501 - AO353_17655 0.46 +0.5
3,891,501 - AO353_17655 0.46 -0.2
3,891,501 - AO353_17655 0.46 +0.5
3,891,575 + AO353_17655 0.53 -0.5
3,891,575 + AO353_17655 0.53 -0.0
3,891,576 - AO353_17655 0.53 -1.1
3,891,641 + AO353_17655 0.59 +0.1
3,891,641 + AO353_17655 0.59 -0.9
3,891,641 + AO353_17655 0.59 +0.5
3,891,641 + AO353_17655 0.59 +0.1
3,891,641 + AO353_17655 0.59 -0.4
3,891,641 + AO353_17655 0.59 -0.5
3,891,641 + AO353_17655 0.59 -1.1
3,891,642 - AO353_17655 0.59 +0.2
3,891,642 - AO353_17655 0.59 +0.4
3,891,642 - AO353_17655 0.59 +0.1
3,891,689 + AO353_17655 0.64 -0.4
3,891,689 + AO353_17655 0.64 -0.2
3,891,689 + AO353_17655 0.64 +0.4
3,891,689 + AO353_17655 0.64 +0.3
3,891,689 + AO353_17655 0.64 -0.7
3,891,690 - AO353_17655 0.64 -2.5
3,891,690 - AO353_17655 0.64 +0.1
3,891,719 + AO353_17655 0.66 +0.3
3,891,719 + AO353_17655 0.66 -1.0
3,891,719 + AO353_17655 0.66 -0.2
3,891,719 + AO353_17655 0.66 -0.3
3,891,719 + AO353_17655 0.66 +0.5
3,891,719 + AO353_17655 0.66 -0.1
3,891,720 - AO353_17655 0.66 +0.8
3,891,720 - AO353_17655 0.66 -0.1
3,891,720 - AO353_17655 0.66 +0.6
3,891,768 - AO353_17655 0.71 +0.4
3,891,845 + AO353_17655 0.78 -0.3
3,891,845 + AO353_17655 0.78 -0.2
3,891,845 + AO353_17655 0.78 -1.3
3,891,845 + AO353_17655 0.78 -0.1
3,891,845 + AO353_17655 0.78 +0.9
3,891,846 - AO353_17655 0.78 -0.7
3,891,861 - AO353_17655 0.80 -0.8
3,891,861 - AO353_17655 0.80 -0.5

Or see this region's nucleotide sequence