Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12420

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12415 and AO353_12420 are separated by 259 nucleotidesAO353_12420 and AO353_12425 are separated by 218 nucleotides AO353_12415: AO353_12415 - poly(R)-hydroxyalkanoic acid synthase, at 2,729,251 to 2,730,930 _12415 AO353_12420: AO353_12420 - predicted FeS cluster maintenance protein (from data), at 2,731,190 to 2,731,570 _12420 AO353_12425: AO353_12425 - ATP-dependent protease ATP-binding subunit HslU, at 2,731,789 to 2,733,129 _12425 Position (kb) 2731 2732Strain fitness (log2 ratio) -2 -1 0 1 2at 2730.245 kb on + strand, within AO353_12415at 2730.245 kb on + strand, within AO353_12415at 2730.245 kb on + strand, within AO353_12415at 2730.245 kb on + strand, within AO353_12415at 2730.245 kb on + strand, within AO353_12415at 2730.246 kb on - strand, within AO353_12415at 2730.246 kb on - strand, within AO353_12415at 2730.331 kb on + strand, within AO353_12415at 2730.331 kb on + strand, within AO353_12415at 2730.331 kb on + strand, within AO353_12415at 2730.332 kb on - strand, within AO353_12415at 2730.332 kb on - strand, within AO353_12415at 2730.332 kb on - strand, within AO353_12415at 2730.332 kb on - strand, within AO353_12415at 2730.332 kb on - strand, within AO353_12415at 2730.332 kb on - strand, within AO353_12415at 2730.641 kb on + strand, within AO353_12415at 2730.641 kb on + strand, within AO353_12415at 2730.641 kb on + strand, within AO353_12415at 2730.641 kb on + strand, within AO353_12415at 2730.641 kb on + strand, within AO353_12415at 2730.642 kb on - strand, within AO353_12415at 2730.642 kb on - strand, within AO353_12415at 2730.642 kb on - strand, within AO353_12415at 2730.642 kb on - strand, within AO353_12415at 2730.642 kb on - strand, within AO353_12415at 2730.642 kb on - strand, within AO353_12415at 2730.654 kb on - strand, within AO353_12415at 2730.654 kb on - strand, within AO353_12415at 2730.662 kb on + strand, within AO353_12415at 2730.663 kb on - strand, within AO353_12415at 2730.733 kb on - strand, within AO353_12415at 2730.733 kb on - strand, within AO353_12415at 2730.834 kb on + strandat 2730.834 kb on + strandat 2730.834 kb on + strandat 2730.835 kb on - strandat 2730.835 kb on - strandat 2730.835 kb on - strandat 2730.835 kb on - strandat 2730.835 kb on - strandat 2730.835 kb on - strandat 2730.870 kb on + strandat 2730.871 kb on - strandat 2730.882 kb on + strandat 2730.883 kb on - strandat 2730.916 kb on - strandat 2730.916 kb on - strandat 2730.924 kb on + strandat 2730.924 kb on + strandat 2730.924 kb on + strandat 2730.924 kb on + strandat 2730.932 kb on + strandat 2730.932 kb on + strandat 2730.933 kb on - strandat 2730.933 kb on - strandat 2730.933 kb on - strandat 2730.933 kb on - strandat 2730.933 kb on - strandat 2730.933 kb on - strandat 2730.933 kb on - strandat 2730.959 kb on + strandat 2730.959 kb on + strandat 2730.959 kb on + strandat 2730.960 kb on - strandat 2730.960 kb on - strandat 2730.977 kb on + strandat 2730.977 kb on + strandat 2730.977 kb on + strandat 2730.977 kb on + strandat 2730.978 kb on - strandat 2730.978 kb on - strandat 2730.978 kb on - strandat 2730.978 kb on - strandat 2730.978 kb on - strandat 2730.978 kb on - strandat 2731.018 kb on + strandat 2731.018 kb on + strandat 2731.019 kb on - strandat 2731.019 kb on - strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.024 kb on + strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.025 kb on - strandat 2731.095 kb on - strandat 2731.156 kb on + strandat 2731.170 kb on + strandat 2731.171 kb on - strandat 2731.191 kb on + strandat 2731.191 kb on + strandat 2731.191 kb on + strandat 2731.192 kb on - strandat 2731.192 kb on - strandat 2731.192 kb on - strandat 2731.261 kb on - strand, within AO353_12420at 2731.300 kb on - strand, within AO353_12420at 2731.300 kb on - strand, within AO353_12420at 2731.306 kb on - strand, within AO353_12420at 2731.379 kb on + strand, within AO353_12420at 2731.379 kb on + strand, within AO353_12420at 2731.380 kb on - strand, within AO353_12420at 2731.380 kb on - strand, within AO353_12420at 2731.488 kb on + strand, within AO353_12420at 2731.488 kb on + strand, within AO353_12420at 2731.488 kb on + strand, within AO353_12420at 2731.489 kb on - strand, within AO353_12420at 2731.507 kb on - strand, within AO353_12420at 2731.588 kb on + strandat 2731.588 kb on + strandat 2731.588 kb on + strandat 2731.588 kb on + strandat 2731.588 kb on + strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.589 kb on - strandat 2731.590 kb on + strandat 2731.590 kb on + strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.591 kb on - strandat 2731.674 kb on + strandat 2731.790 kb on + strandat 2731.790 kb on + strandat 2731.790 kb on + strandat 2731.791 kb on - strandat 2731.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,730,245 + AO353_12415 0.59 -0.3
2,730,245 + AO353_12415 0.59 -0.1
2,730,245 + AO353_12415 0.59 -0.1
2,730,245 + AO353_12415 0.59 -0.4
2,730,245 + AO353_12415 0.59 -0.0
2,730,246 - AO353_12415 0.59 -1.2
2,730,246 - AO353_12415 0.59 -0.5
2,730,331 + AO353_12415 0.64 +1.6
2,730,331 + AO353_12415 0.64 +0.3
2,730,331 + AO353_12415 0.64 -1.6
2,730,332 - AO353_12415 0.64 -0.2
2,730,332 - AO353_12415 0.64 +0.6
2,730,332 - AO353_12415 0.64 -0.2
2,730,332 - AO353_12415 0.64 +0.5
2,730,332 - AO353_12415 0.64 -0.4
2,730,332 - AO353_12415 0.64 +1.0
2,730,641 + AO353_12415 0.83 +0.1
2,730,641 + AO353_12415 0.83 +1.9
2,730,641 + AO353_12415 0.83 +0.0
2,730,641 + AO353_12415 0.83 +0.9
2,730,641 + AO353_12415 0.83 +0.4
2,730,642 - AO353_12415 0.83 +0.2
2,730,642 - AO353_12415 0.83 -2.2
2,730,642 - AO353_12415 0.83 +1.0
2,730,642 - AO353_12415 0.83 +0.8
2,730,642 - AO353_12415 0.83 +1.4
2,730,642 - AO353_12415 0.83 +0.3
2,730,654 - AO353_12415 0.84 -0.4
2,730,654 - AO353_12415 0.84 -0.1
2,730,662 + AO353_12415 0.84 -0.5
2,730,663 - AO353_12415 0.84 -0.7
2,730,733 - AO353_12415 0.88 +1.6
2,730,733 - AO353_12415 0.88 -0.1
2,730,834 + +0.3
2,730,834 + +0.3
2,730,834 + -0.7
2,730,835 - +1.2
2,730,835 - +0.2
2,730,835 - +0.2
2,730,835 - -0.4
2,730,835 - +0.4
2,730,835 - +0.0
2,730,870 + -0.4
2,730,871 - -1.1
2,730,882 + -0.2
2,730,883 - -0.3
2,730,916 - +0.5
2,730,916 - +0.7
2,730,924 + +0.1
2,730,924 + +0.3
2,730,924 + +0.3
2,730,924 + -0.8
2,730,932 + +0.1
2,730,932 + -0.8
2,730,933 - -0.2
2,730,933 - -1.1
2,730,933 - +0.3
2,730,933 - -0.4
2,730,933 - +1.3
2,730,933 - -0.0
2,730,933 - -0.2
2,730,959 + +0.5
2,730,959 + +0.3
2,730,959 + +1.0
2,730,960 - -1.5
2,730,960 - +0.3
2,730,977 + -1.0
2,730,977 + +1.4
2,730,977 + -0.8
2,730,977 + -2.1
2,730,978 - +0.3
2,730,978 - -0.6
2,730,978 - +0.5
2,730,978 - +1.3
2,730,978 - +0.3
2,730,978 - +1.2
2,731,018 + +0.2
2,731,018 + -0.5
2,731,019 - -0.6
2,731,019 - +0.7
2,731,024 + +0.2
2,731,024 + -0.4
2,731,024 + -0.2
2,731,024 + +0.6
2,731,024 + -0.4
2,731,024 + +1.0
2,731,024 + -0.2
2,731,024 + -1.3
2,731,024 + -0.3
2,731,025 - +1.2
2,731,025 - +0.2
2,731,025 - -0.3
2,731,025 - +0.7
2,731,025 - -0.2
2,731,025 - +0.2
2,731,025 - +0.8
2,731,025 - -0.2
2,731,025 - +0.8
2,731,025 - +0.3
2,731,025 - +0.9
2,731,025 - +1.0
2,731,095 - +0.5
2,731,156 + +0.3
2,731,170 + +1.0
2,731,171 - +1.1
2,731,191 + +0.4
2,731,191 + +1.5
2,731,191 + -0.9
2,731,192 - +0.8
2,731,192 - +0.2
2,731,192 - -0.7
2,731,261 - AO353_12420 0.19 -1.1
2,731,300 - AO353_12420 0.29 -0.4
2,731,300 - AO353_12420 0.29 +1.0
2,731,306 - AO353_12420 0.30 +1.2
2,731,379 + AO353_12420 0.50 -0.6
2,731,379 + AO353_12420 0.50 -1.7
2,731,380 - AO353_12420 0.50 -0.2
2,731,380 - AO353_12420 0.50 -0.4
2,731,488 + AO353_12420 0.78 -0.2
2,731,488 + AO353_12420 0.78 +0.0
2,731,488 + AO353_12420 0.78 -1.9
2,731,489 - AO353_12420 0.78 -1.2
2,731,507 - AO353_12420 0.83 -0.7
2,731,588 + -0.5
2,731,588 + -1.5
2,731,588 + -0.7
2,731,588 + +0.3
2,731,588 + -0.9
2,731,589 - -0.1
2,731,589 - +0.8
2,731,589 - +2.5
2,731,589 - +1.8
2,731,589 - -1.0
2,731,589 - +0.9
2,731,589 - +0.3
2,731,589 - -0.2
2,731,590 + +1.0
2,731,590 + +0.8
2,731,591 - +0.7
2,731,591 - -0.9
2,731,591 - -1.3
2,731,591 - +1.1
2,731,591 - -1.8
2,731,591 - -1.3
2,731,591 - +0.0
2,731,591 - -0.1
2,731,674 + -0.6
2,731,790 + -1.7
2,731,790 + +0.1
2,731,790 + -1.5
2,731,791 - -0.5
2,731,791 - -1.3

Or see this region's nucleotide sequence