Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09140

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09130 and AO353_09135 are separated by 134 nucleotidesAO353_09135 and AO353_09140 are separated by 183 nucleotidesAO353_09140 and AO353_09145 are separated by 127 nucleotides AO353_09130: AO353_09130 - acetyl-CoA hydrolase, at 2,005,746 to 2,007,671 _09130 AO353_09135: AO353_09135 - cytochrome C, at 2,007,806 to 2,008,222 _09135 AO353_09140: AO353_09140 - XRE family transcriptional regulator, at 2,008,406 to 2,008,954 _09140 AO353_09145: AO353_09145 - alanine racemase, at 2,009,082 to 2,010,155 _09145 Position (kb) 2008 2009Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2007.508 kb on + strandat 2007.508 kb on + strandat 2007.508 kb on + strandat 2007.508 kb on + strandat 2007.508 kb on + strandat 2007.508 kb on + strandat 2007.509 kb on - strandat 2007.509 kb on - strandat 2007.509 kb on - strandat 2007.550 kb on + strandat 2007.550 kb on + strandat 2007.550 kb on + strandat 2007.550 kb on + strandat 2007.550 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.606 kb on + strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.607 kb on - strandat 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.608 kb on + strandat 2007.609 kb on - strandat 2007.609 kb on - strandat 2007.609 kb on - strandat 2007.609 kb on - strandat 2007.762 kb on - strandat 2007.762 kb on - strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on + strandat 2007.807 kb on - strandat 2007.808 kb on - strandat 2007.808 kb on - strandat 2007.808 kb on - strandat 2007.808 kb on - strandat 2007.808 kb on - strandat 2007.808 kb on - strandat 2007.908 kb on + strand, within AO353_09135at 2008.068 kb on - strand, within AO353_09135at 2008.109 kb on + strand, within AO353_09135at 2008.109 kb on + strand, within AO353_09135at 2008.110 kb on - strand, within AO353_09135at 2008.110 kb on - strand, within AO353_09135at 2008.226 kb on + strandat 2008.226 kb on + strandat 2008.226 kb on + strandat 2008.227 kb on - strandat 2008.227 kb on - strandat 2008.227 kb on - strandat 2008.227 kb on - strandat 2008.239 kb on - strandat 2008.239 kb on - strandat 2008.239 kb on - strandat 2008.239 kb on - strandat 2008.257 kb on - strandat 2008.296 kb on + strandat 2008.296 kb on + strandat 2008.297 kb on - strandat 2008.297 kb on - strandat 2008.297 kb on - strandat 2008.297 kb on - strandat 2008.297 kb on - strandat 2008.297 kb on - strandat 2008.298 kb on + strandat 2008.298 kb on + strandat 2008.298 kb on + strandat 2008.330 kb on - strandat 2008.343 kb on + strandat 2008.343 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.346 kb on + strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.347 kb on - strandat 2008.361 kb on + strandat 2008.361 kb on + strandat 2008.362 kb on - strandat 2008.362 kb on - strandat 2008.362 kb on - strandat 2008.362 kb on - strandat 2008.362 kb on - strandat 2008.436 kb on + strandat 2008.436 kb on + strandat 2008.436 kb on + strandat 2008.494 kb on + strand, within AO353_09140at 2008.494 kb on + strand, within AO353_09140at 2008.495 kb on - strand, within AO353_09140at 2008.495 kb on - strand, within AO353_09140at 2008.495 kb on - strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.497 kb on + strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.498 kb on - strand, within AO353_09140at 2008.626 kb on + strand, within AO353_09140at 2008.626 kb on + strand, within AO353_09140at 2008.627 kb on - strand, within AO353_09140at 2008.627 kb on - strand, within AO353_09140at 2008.627 kb on - strand, within AO353_09140at 2008.648 kb on + strand, within AO353_09140at 2008.728 kb on + strand, within AO353_09140at 2008.728 kb on + strand, within AO353_09140at 2008.728 kb on + strand, within AO353_09140at 2008.728 kb on + strand, within AO353_09140at 2008.728 kb on + strand, within AO353_09140at 2008.729 kb on - strand, within AO353_09140at 2008.729 kb on - strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.805 kb on + strand, within AO353_09140at 2008.806 kb on - strand, within AO353_09140at 2008.806 kb on - strand, within AO353_09140at 2008.855 kb on + strand, within AO353_09140at 2008.855 kb on + strand, within AO353_09140at 2008.855 kb on + strand, within AO353_09140at 2008.855 kb on + strand, within AO353_09140at 2008.855 kb on + strand, within AO353_09140at 2008.855 kb on + strand, within AO353_09140at 2008.856 kb on - strand, within AO353_09140at 2008.856 kb on - strand, within AO353_09140at 2008.856 kb on - strand, within AO353_09140at 2008.867 kb on + strand, within AO353_09140at 2008.867 kb on + strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.868 kb on - strand, within AO353_09140at 2008.908 kb on - strandat 2008.921 kb on + strandat 2008.960 kb on + strandat 2008.960 kb on + strandat 2008.961 kb on - strandat 2008.988 kb on + strandat 2008.998 kb on + strandat 2008.999 kb on - strandat 2009.019 kb on + strandat 2009.019 kb on + strandat 2009.019 kb on + strandat 2009.019 kb on + strandat 2009.019 kb on + strandat 2009.020 kb on - strandat 2009.020 kb on - strandat 2009.020 kb on - strandat 2009.020 kb on - strandat 2009.023 kb on + strandat 2009.023 kb on + strandat 2009.023 kb on + strandat 2009.023 kb on + strandat 2009.024 kb on - strandat 2009.024 kb on - strandat 2009.024 kb on - strandat 2009.095 kb on + strandat 2009.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,007,508 + -0.4
2,007,508 + -1.9
2,007,508 + +0.8
2,007,508 + -0.0
2,007,508 + +0.9
2,007,508 + -0.4
2,007,509 - -0.4
2,007,509 - -0.5
2,007,509 - -1.4
2,007,550 + +0.4
2,007,550 + +0.1
2,007,550 + -0.6
2,007,550 + -0.7
2,007,550 + -0.2
2,007,606 + -0.5
2,007,606 + -0.6
2,007,606 + +0.1
2,007,606 + +0.6
2,007,606 + -0.6
2,007,606 + +1.0
2,007,606 + -1.3
2,007,606 + -1.4
2,007,606 + +0.2
2,007,606 + +2.6
2,007,606 + +0.1
2,007,606 + +0.5
2,007,606 + +0.4
2,007,606 + -1.9
2,007,606 + +0.4
2,007,606 + +1.4
2,007,606 + -1.4
2,007,606 + -0.2
2,007,606 + +1.1
2,007,606 + +0.1
2,007,606 + -1.5
2,007,606 + -0.5
2,007,606 + +1.3
2,007,606 + +0.9
2,007,606 + -0.6
2,007,606 + +0.2
2,007,606 + -0.8
2,007,606 + -0.8
2,007,606 + +1.5
2,007,606 + +1.1
2,007,606 + +0.3
2,007,606 + -1.3
2,007,606 + -1.7
2,007,606 + -0.4
2,007,606 + +0.8
2,007,606 + +0.8
2,007,606 + +0.9
2,007,606 + -0.8
2,007,606 + +0.9
2,007,606 + +0.1
2,007,606 + +0.1
2,007,606 + -2.4
2,007,606 + -3.3
2,007,606 + +0.4
2,007,606 + -0.8
2,007,606 + +0.2
2,007,606 + -0.2
2,007,606 + +0.6
2,007,607 - -0.7
2,007,607 - +1.2
2,007,607 - -1.5
2,007,607 - -0.5
2,007,607 - -0.2
2,007,607 - +0.3
2,007,607 - +0.1
2,007,607 - -1.1
2,007,607 - +1.6
2,007,607 - -0.5
2,007,607 - +1.6
2,007,607 - +0.3
2,007,607 - +0.8
2,007,607 - +0.1
2,007,607 - +1.2
2,007,607 - +0.7
2,007,607 - +1.1
2,007,607 - +0.6
2,007,607 - -0.8
2,007,607 - -0.1
2,007,607 - +0.4
2,007,607 - +1.1
2,007,607 - -1.2
2,007,607 - -1.3
2,007,607 - +0.3
2,007,607 - +0.7
2,007,607 - +0.9
2,007,607 - -0.2
2,007,607 - -0.6
2,007,607 - -1.0
2,007,607 - +0.3
2,007,607 - +1.9
2,007,607 - -0.4
2,007,607 - +0.1
2,007,607 - -0.6
2,007,607 - -0.5
2,007,608 + -0.2
2,007,608 + +0.3
2,007,608 + +0.5
2,007,608 + +0.6
2,007,608 + -0.2
2,007,608 + +0.4
2,007,608 + +0.5
2,007,609 - -0.9
2,007,609 - -0.1
2,007,609 - -0.2
2,007,609 - +0.2
2,007,762 - +0.3
2,007,762 - -0.4
2,007,807 + -0.1
2,007,807 + -1.2
2,007,807 + +0.2
2,007,807 + -0.6
2,007,807 + +0.4
2,007,807 + -0.2
2,007,807 + +1.4
2,007,807 + +1.1
2,007,807 + +0.3
2,007,807 - -0.5
2,007,808 - -0.9
2,007,808 - +1.1
2,007,808 - -0.4
2,007,808 - -0.4
2,007,808 - -0.4
2,007,808 - -1.3
2,007,908 + AO353_09135 0.24 +1.2
2,008,068 - AO353_09135 0.63 +1.2
2,008,109 + AO353_09135 0.73 -0.1
2,008,109 + AO353_09135 0.73 +2.0
2,008,110 - AO353_09135 0.73 +0.1
2,008,110 - AO353_09135 0.73 +0.5
2,008,226 + +0.5
2,008,226 + +0.2
2,008,226 + -0.1
2,008,227 - -0.8
2,008,227 - -0.5
2,008,227 - -0.6
2,008,227 - +0.9
2,008,239 - -0.3
2,008,239 - -0.5
2,008,239 - +0.3
2,008,239 - -1.3
2,008,257 - -0.9
2,008,296 + +0.6
2,008,296 + -0.9
2,008,297 - -1.4
2,008,297 - +0.3
2,008,297 - -0.2
2,008,297 - +0.1
2,008,297 - +1.0
2,008,297 - +0.2
2,008,298 + +1.3
2,008,298 + -0.9
2,008,298 + +1.6
2,008,330 - -1.4
2,008,343 + -0.6
2,008,343 + +0.1
2,008,346 + -0.2
2,008,346 + -0.5
2,008,346 + +1.0
2,008,346 + -0.2
2,008,346 + -0.4
2,008,346 + -0.2
2,008,346 + -0.4
2,008,346 + +0.5
2,008,347 - -0.5
2,008,347 - -0.1
2,008,347 - +0.1
2,008,347 - +0.0
2,008,347 - +0.4
2,008,347 - -0.4
2,008,347 - -0.0
2,008,347 - -0.2
2,008,361 + -0.5
2,008,361 + +1.1
2,008,362 - -0.3
2,008,362 - +0.1
2,008,362 - +0.8
2,008,362 - +0.3
2,008,362 - -1.0
2,008,436 + -1.6
2,008,436 + -0.9
2,008,436 + +1.6
2,008,494 + AO353_09140 0.16 -0.3
2,008,494 + AO353_09140 0.16 -0.1
2,008,495 - AO353_09140 0.16 -2.1
2,008,495 - AO353_09140 0.16 -1.5
2,008,495 - AO353_09140 0.16 +0.6
2,008,497 + AO353_09140 0.17 -0.5
2,008,497 + AO353_09140 0.17 -0.5
2,008,497 + AO353_09140 0.17 -0.7
2,008,497 + AO353_09140 0.17 -0.5
2,008,497 + AO353_09140 0.17 -1.6
2,008,497 + AO353_09140 0.17 -0.7
2,008,497 + AO353_09140 0.17 -0.2
2,008,497 + AO353_09140 0.17 -1.0
2,008,498 - AO353_09140 0.17 -2.6
2,008,498 - AO353_09140 0.17 +1.0
2,008,498 - AO353_09140 0.17 -1.9
2,008,498 - AO353_09140 0.17 -0.6
2,008,498 - AO353_09140 0.17 -1.9
2,008,498 - AO353_09140 0.17 +0.6
2,008,498 - AO353_09140 0.17 -0.4
2,008,498 - AO353_09140 0.17 -0.7
2,008,498 - AO353_09140 0.17 +0.5
2,008,626 + AO353_09140 0.40 +0.2
2,008,626 + AO353_09140 0.40 -3.1
2,008,627 - AO353_09140 0.40 -1.6
2,008,627 - AO353_09140 0.40 -1.1
2,008,627 - AO353_09140 0.40 -0.8
2,008,648 + AO353_09140 0.44 -2.9
2,008,728 + AO353_09140 0.59 -0.2
2,008,728 + AO353_09140 0.59 -0.5
2,008,728 + AO353_09140 0.59 -0.6
2,008,728 + AO353_09140 0.59 +1.1
2,008,728 + AO353_09140 0.59 -0.8
2,008,729 - AO353_09140 0.59 -2.1
2,008,729 - AO353_09140 0.59 +0.7
2,008,805 + AO353_09140 0.73 -0.6
2,008,805 + AO353_09140 0.73 -2.0
2,008,805 + AO353_09140 0.73 -1.0
2,008,805 + AO353_09140 0.73 +0.1
2,008,805 + AO353_09140 0.73 -1.1
2,008,805 + AO353_09140 0.73 -0.4
2,008,805 + AO353_09140 0.73 -0.1
2,008,805 + AO353_09140 0.73 +1.3
2,008,805 + AO353_09140 0.73 -0.6
2,008,805 + AO353_09140 0.73 -1.6
2,008,805 + AO353_09140 0.73 +0.2
2,008,806 - AO353_09140 0.73 -2.5
2,008,806 - AO353_09140 0.73 +0.7
2,008,855 + AO353_09140 0.82 -0.7
2,008,855 + AO353_09140 0.82 -0.2
2,008,855 + AO353_09140 0.82 -1.2
2,008,855 + AO353_09140 0.82 -0.4
2,008,855 + AO353_09140 0.82 -0.2
2,008,855 + AO353_09140 0.82 -1.3
2,008,856 - AO353_09140 0.82 +0.2
2,008,856 - AO353_09140 0.82 -0.6
2,008,856 - AO353_09140 0.82 -1.5
2,008,867 + AO353_09140 0.84 -0.3
2,008,867 + AO353_09140 0.84 +0.1
2,008,868 - AO353_09140 0.84 -0.0
2,008,868 - AO353_09140 0.84 -0.2
2,008,868 - AO353_09140 0.84 -2.5
2,008,868 - AO353_09140 0.84 +0.3
2,008,868 - AO353_09140 0.84 -1.3
2,008,868 - AO353_09140 0.84 -1.3
2,008,868 - AO353_09140 0.84 -1.1
2,008,908 - -2.5
2,008,921 + -0.3
2,008,960 + +0.3
2,008,960 + +0.2
2,008,961 - -0.5
2,008,988 + -1.1
2,008,998 + -0.5
2,008,999 - +0.1
2,009,019 + +0.6
2,009,019 + -0.1
2,009,019 + -0.4
2,009,019 + +0.1
2,009,019 + -1.6
2,009,020 - +0.3
2,009,020 - +0.1
2,009,020 - -0.6
2,009,020 - -1.0
2,009,023 + -0.1
2,009,023 + -0.3
2,009,023 + -1.0
2,009,023 + -0.7
2,009,024 - -0.5
2,009,024 - -0.2
2,009,024 - +0.8
2,009,095 + +0.5
2,009,096 - -0.1

Or see this region's nucleotide sequence