Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07510

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_07500 and AO353_07505 are separated by 107 nucleotidesAO353_07505 and AO353_07510 overlap by 4 nucleotidesAO353_07510 and AO353_07515 overlap by 8 nucleotidesAO353_07515 and AO353_07520 overlap by 8 nucleotides AO353_07500: AO353_07500 - pyrroloquinoline quinone biosynthesis protein PqqE, at 1,652,303 to 1,652,599 _07500 AO353_07505: AO353_07505 - dethiobiotin synthetase, at 1,652,707 to 1,653,387 _07505 AO353_07510: AO353_07510 - malonyl-[acyl-carrier protein] O-methyltransferase BioC, at 1,653,384 to 1,654,196 _07510 AO353_07515: AO353_07515 - transporter, at 1,654,189 to 1,654,920 _07515 AO353_07520: AO353_07520 - 8-amino-7-oxononanoate synthase, at 1,654,913 to 1,656,091 _07520 Position (kb) 1653 1654 1655Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1652.395 kb on + strand, within AO353_07500at 1652.395 kb on + strand, within AO353_07500at 1652.395 kb on + strand, within AO353_07500at 1652.395 kb on + strand, within AO353_07500at 1652.396 kb on - strand, within AO353_07500at 1652.396 kb on - strand, within AO353_07500at 1652.396 kb on - strand, within AO353_07500at 1652.396 kb on - strand, within AO353_07500at 1652.396 kb on - strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.404 kb on + strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.405 kb on - strand, within AO353_07500at 1652.407 kb on + strand, within AO353_07500at 1652.407 kb on + strand, within AO353_07500at 1652.407 kb on + strand, within AO353_07500at 1652.407 kb on + strand, within AO353_07500at 1652.407 kb on + strand, within AO353_07500at 1652.554 kb on + strand, within AO353_07500at 1652.554 kb on + strand, within AO353_07500at 1652.554 kb on + strand, within AO353_07500at 1652.554 kb on + strand, within AO353_07500at 1652.555 kb on - strand, within AO353_07500at 1652.555 kb on - strand, within AO353_07500at 1652.555 kb on - strand, within AO353_07500at 1652.571 kb on + strandat 1652.571 kb on + strandat 1652.571 kb on + strandat 1652.571 kb on + strandat 1652.571 kb on + strandat 1652.572 kb on - strandat 1652.572 kb on - strandat 1652.572 kb on - strandat 1652.572 kb on - strandat 1652.572 kb on - strandat 1652.572 kb on - strandat 1652.572 kb on - strandat 1652.697 kb on + strandat 1652.697 kb on + strandat 1652.698 kb on - strandat 1652.698 kb on - strandat 1652.701 kb on + strandat 1652.701 kb on + strandat 1652.701 kb on + strandat 1652.701 kb on + strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.702 kb on - strandat 1652.856 kb on + strand, within AO353_07505at 1652.856 kb on + strand, within AO353_07505at 1652.857 kb on - strand, within AO353_07505at 1652.857 kb on - strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strandat 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.070 kb on + strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.071 kb on - strand, within AO353_07505at 1653.182 kb on + strand, within AO353_07505at 1653.182 kb on + strand, within AO353_07505at 1653.182 kb on + strand, within AO353_07505at 1653.182 kb on + strand, within AO353_07505at 1653.182 kb on + strand, within AO353_07505at 1653.183 kb on - strand, within AO353_07505at 1653.183 kb on - strand, within AO353_07505at 1653.183 kb on - strand, within AO353_07505at 1653.183 kb on - strand, within AO353_07505at 1653.183 kb on - strand, within AO353_07505at 1653.183 kb on - strand, within AO353_07505at 1653.232 kb on - strand, within AO353_07505at 1653.288 kb on + strand, within AO353_07505at 1653.316 kb on + strand, within AO353_07505at 1653.316 kb on + strand, within AO353_07505at 1653.317 kb on - strand, within AO353_07505at 1653.317 kb on - strand, within AO353_07505at 1653.317 kb on - strand, within AO353_07505at 1653.374 kb on + strandat 1653.374 kb on + strandat 1653.374 kb on + strandat 1653.374 kb on + strandat 1653.374 kb on + strandat 1653.374 kb on + strandat 1653.374 kb on + strandat 1653.375 kb on - strandat 1653.375 kb on - strandat 1653.387 kb on + strandat 1653.387 kb on + strandat 1653.387 kb on + strandat 1653.387 kb on + strandat 1653.387 kb on + strandat 1653.387 kb on + strandat 1653.409 kb on + strandat 1653.409 kb on + strandat 1653.410 kb on - strandat 1653.421 kb on + strandat 1653.422 kb on - strandat 1653.422 kb on - strandat 1653.422 kb on - strandat 1653.460 kb on + strandat 1653.460 kb on + strandat 1653.527 kb on + strand, within AO353_07510at 1653.527 kb on + strand, within AO353_07510at 1653.528 kb on - strand, within AO353_07510at 1653.528 kb on - strand, within AO353_07510at 1653.564 kb on - strand, within AO353_07510at 1653.585 kb on + strand, within AO353_07510at 1653.585 kb on + strand, within AO353_07510at 1653.585 kb on + strand, within AO353_07510at 1653.585 kb on + strand, within AO353_07510at 1653.585 kb on + strand, within AO353_07510at 1653.586 kb on - strand, within AO353_07510at 1653.586 kb on - strand, within AO353_07510at 1653.586 kb on - strand, within AO353_07510at 1653.586 kb on - strand, within AO353_07510at 1653.586 kb on - strand, within AO353_07510at 1653.586 kb on - strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.646 kb on + strand, within AO353_07510at 1653.647 kb on - strand, within AO353_07510at 1653.647 kb on - strand, within AO353_07510at 1653.647 kb on - strand, within AO353_07510at 1653.718 kb on + strand, within AO353_07510at 1653.718 kb on + strand, within AO353_07510at 1653.718 kb on + strand, within AO353_07510at 1653.718 kb on + strand, within AO353_07510at 1653.719 kb on - strand, within AO353_07510at 1653.719 kb on - strand, within AO353_07510at 1653.719 kb on - strand, within AO353_07510at 1653.719 kb on - strand, within AO353_07510at 1653.725 kb on + strand, within AO353_07510at 1653.726 kb on - strand, within AO353_07510at 1653.819 kb on + strand, within AO353_07510at 1653.820 kb on - strand, within AO353_07510at 1654.000 kb on + strand, within AO353_07510at 1654.001 kb on - strand, within AO353_07510at 1654.001 kb on - strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.108 kb on + strand, within AO353_07510at 1654.109 kb on - strand, within AO353_07510at 1654.109 kb on - strand, within AO353_07510at 1654.109 kb on - strand, within AO353_07510at 1654.109 kb on - strand, within AO353_07510at 1654.185 kb on + strandat 1654.185 kb on + strandat 1654.186 kb on - strandat 1654.186 kb on - strandat 1654.306 kb on + strand, within AO353_07515at 1654.306 kb on + strand, within AO353_07515at 1654.641 kb on + strand, within AO353_07515at 1654.769 kb on - strand, within AO353_07515at 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.967 kb on + strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.968 kb on - strandat 1654.973 kb on + strandat 1654.973 kb on + strandat 1654.973 kb on + strandat 1654.973 kb on + strandat 1654.973 kb on + strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strandat 1654.974 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
1,652,395 + AO353_07500 0.31 -0.7
1,652,395 + AO353_07500 0.31 -1.0
1,652,395 + AO353_07500 0.31 -0.8
1,652,395 + AO353_07500 0.31 +0.6
1,652,396 - AO353_07500 0.31 -0.7
1,652,396 - AO353_07500 0.31 -1.1
1,652,396 - AO353_07500 0.31 +0.1
1,652,396 - AO353_07500 0.31 -1.0
1,652,396 - AO353_07500 0.31 +0.2
1,652,404 + AO353_07500 0.34 +0.2
1,652,404 + AO353_07500 0.34 +1.8
1,652,404 + AO353_07500 0.34 -0.1
1,652,404 + AO353_07500 0.34 -0.1
1,652,404 + AO353_07500 0.34 -0.3
1,652,404 + AO353_07500 0.34 +0.2
1,652,404 + AO353_07500 0.34 +1.1
1,652,404 + AO353_07500 0.34 +1.0
1,652,404 + AO353_07500 0.34 -1.2
1,652,404 + AO353_07500 0.34 +1.3
1,652,405 - AO353_07500 0.34 -0.3
1,652,405 - AO353_07500 0.34 -0.3
1,652,405 - AO353_07500 0.34 -1.0
1,652,405 - AO353_07500 0.34 -0.7
1,652,405 - AO353_07500 0.34 +0.0
1,652,405 - AO353_07500 0.34 -0.3
1,652,405 - AO353_07500 0.34 -0.7
1,652,405 - AO353_07500 0.34 +0.9
1,652,405 - AO353_07500 0.34 +0.7
1,652,407 + AO353_07500 0.35 +0.7
1,652,407 + AO353_07500 0.35 +0.3
1,652,407 + AO353_07500 0.35 +0.0
1,652,407 + AO353_07500 0.35 +0.4
1,652,407 + AO353_07500 0.35 -1.5
1,652,554 + AO353_07500 0.85 +0.8
1,652,554 + AO353_07500 0.85 -0.8
1,652,554 + AO353_07500 0.85 -0.5
1,652,554 + AO353_07500 0.85 +0.6
1,652,555 - AO353_07500 0.85 -1.1
1,652,555 - AO353_07500 0.85 -0.7
1,652,555 - AO353_07500 0.85 -0.6
1,652,571 + +0.2
1,652,571 + -0.2
1,652,571 + -0.1
1,652,571 + +0.4
1,652,571 + -0.7
1,652,572 - -0.3
1,652,572 - -0.7
1,652,572 - +0.9
1,652,572 - -0.7
1,652,572 - -0.2
1,652,572 - -0.0
1,652,572 - +1.4
1,652,697 + -0.4
1,652,697 + -0.8
1,652,698 - -1.9
1,652,698 - -0.2
1,652,701 + -1.3
1,652,701 + +1.1
1,652,701 + +0.6
1,652,701 + +0.0
1,652,702 - +0.2
1,652,702 - +0.8
1,652,702 - +0.4
1,652,702 - +0.6
1,652,702 - -1.8
1,652,702 - +0.0
1,652,702 - -0.3
1,652,856 + AO353_07505 0.22 -1.3
1,652,856 + AO353_07505 0.22 -0.2
1,652,857 - AO353_07505 0.22 -2.2
1,652,857 - AO353_07505 0.22 -0.6
1,653,070 + AO353_07505 0.53 -2.2
1,653,070 + AO353_07505 0.53 -2.0
1,653,070 + AO353_07505 0.53 -0.1
1,653,070 + AO353_07505 0.53 -2.2
1,653,070 + AO353_07505 0.53 -0.5
1,653,070 + AO353_07505 0.53 -0.3
1,653,070 + AO353_07505 0.53 -1.2
1,653,070 + AO353_07505 0.53 -2.8
1,653,070 + +0.5
1,653,070 + AO353_07505 0.53 +0.0
1,653,070 + AO353_07505 0.53 -2.3
1,653,070 + AO353_07505 0.53 -1.6
1,653,070 + AO353_07505 0.53 -1.0
1,653,071 - AO353_07505 0.53 -2.1
1,653,071 - AO353_07505 0.53 -1.5
1,653,071 - AO353_07505 0.53 -2.6
1,653,071 - AO353_07505 0.53 -0.5
1,653,071 - AO353_07505 0.53 +0.1
1,653,071 - AO353_07505 0.53 -0.7
1,653,071 - AO353_07505 0.53 -1.4
1,653,071 - AO353_07505 0.53 -1.6
1,653,071 - AO353_07505 0.53 -1.4
1,653,071 - AO353_07505 0.53 -2.0
1,653,071 - AO353_07505 0.53 -1.4
1,653,071 - AO353_07505 0.53 -1.2
1,653,071 - AO353_07505 0.53 -1.1
1,653,071 - AO353_07505 0.53 -1.2
1,653,071 - AO353_07505 0.53 -2.0
1,653,182 + AO353_07505 0.70 -3.0
1,653,182 + AO353_07505 0.70 -3.0
1,653,182 + AO353_07505 0.70 -2.6
1,653,182 + AO353_07505 0.70 -1.9
1,653,182 + AO353_07505 0.70 -0.2
1,653,183 - AO353_07505 0.70 -2.0
1,653,183 - AO353_07505 0.70 -1.7
1,653,183 - AO353_07505 0.70 -2.6
1,653,183 - AO353_07505 0.70 +0.4
1,653,183 - AO353_07505 0.70 -1.6
1,653,183 - AO353_07505 0.70 -1.8
1,653,232 - AO353_07505 0.77 -1.8
1,653,288 + AO353_07505 0.85 -1.3
1,653,316 + AO353_07505 0.89 -1.7
1,653,316 + AO353_07505 0.89 -1.0
1,653,317 - AO353_07505 0.90 -1.4
1,653,317 - AO353_07505 0.90 -2.1
1,653,317 - AO353_07505 0.90 +0.2
1,653,374 + -0.2
1,653,374 + -1.5
1,653,374 + -1.4
1,653,374 + -0.8
1,653,374 + -1.4
1,653,374 + -1.0
1,653,374 + -1.5
1,653,375 - -0.3
1,653,375 - -0.3
1,653,387 + -0.5
1,653,387 + +0.5
1,653,387 + -1.0
1,653,387 + -2.3
1,653,387 + -0.9
1,653,387 + +0.7
1,653,409 + -0.4
1,653,409 + -1.5
1,653,410 - -3.2
1,653,421 + -3.0
1,653,422 - -0.3
1,653,422 - +1.2
1,653,422 - -1.2
1,653,460 + -1.0
1,653,460 + -0.2
1,653,527 + AO353_07510 0.18 -3.4
1,653,527 + AO353_07510 0.18 -2.7
1,653,528 - AO353_07510 0.18 -0.5
1,653,528 - AO353_07510 0.18 -3.3
1,653,564 - AO353_07510 0.22 -1.5
1,653,585 + AO353_07510 0.25 -1.8
1,653,585 + AO353_07510 0.25 -2.0
1,653,585 + AO353_07510 0.25 -1.4
1,653,585 + AO353_07510 0.25 -2.7
1,653,585 + AO353_07510 0.25 +0.5
1,653,586 - AO353_07510 0.25 -1.9
1,653,586 - AO353_07510 0.25 -1.3
1,653,586 - AO353_07510 0.25 -1.8
1,653,586 - AO353_07510 0.25 +0.6
1,653,586 - AO353_07510 0.25 -3.6
1,653,586 - AO353_07510 0.25 -2.8
1,653,646 + AO353_07510 0.32 -0.3
1,653,646 + AO353_07510 0.32 -0.3
1,653,646 + AO353_07510 0.32 -1.4
1,653,646 + AO353_07510 0.32 -1.8
1,653,646 + AO353_07510 0.32 -0.2
1,653,646 + AO353_07510 0.32 -1.6
1,653,646 + AO353_07510 0.32 -2.2
1,653,646 + AO353_07510 0.32 -2.9
1,653,646 + AO353_07510 0.32 -1.6
1,653,646 + AO353_07510 0.32 +0.6
1,653,646 + AO353_07510 0.32 -2.4
1,653,646 + AO353_07510 0.32 -2.8
1,653,646 + AO353_07510 0.32 -0.5
1,653,647 - AO353_07510 0.32 -0.9
1,653,647 - AO353_07510 0.32 -2.8
1,653,647 - AO353_07510 0.32 +0.7
1,653,718 + AO353_07510 0.41 +1.5
1,653,718 + AO353_07510 0.41 -1.1
1,653,718 + AO353_07510 0.41 -0.8
1,653,718 + AO353_07510 0.41 -2.3
1,653,719 - AO353_07510 0.41 -1.5
1,653,719 - AO353_07510 0.41 -1.8
1,653,719 - AO353_07510 0.41 -2.0
1,653,719 - AO353_07510 0.41 -1.0
1,653,725 + AO353_07510 0.42 -0.5
1,653,726 - AO353_07510 0.42 -3.4
1,653,819 + AO353_07510 0.54 -1.4
1,653,820 - AO353_07510 0.54 -2.1
1,654,000 + AO353_07510 0.76 -1.0
1,654,001 - AO353_07510 0.76 -2.1
1,654,001 - AO353_07510 0.76 -0.3
1,654,108 + AO353_07510 0.89 -3.8
1,654,108 + AO353_07510 0.89 -1.1
1,654,108 + AO353_07510 0.89 -1.0
1,654,108 + AO353_07510 0.89 -2.0
1,654,108 + AO353_07510 0.89 -2.2
1,654,108 + AO353_07510 0.89 -0.6
1,654,108 + AO353_07510 0.89 -0.4
1,654,108 + AO353_07510 0.89 -1.5
1,654,108 + AO353_07510 0.89 +0.1
1,654,109 - AO353_07510 0.89 -1.0
1,654,109 - AO353_07510 0.89 -1.8
1,654,109 - AO353_07510 0.89 +0.5
1,654,109 - AO353_07510 0.89 -1.7
1,654,185 + -0.9
1,654,185 + -0.8
1,654,186 - -1.2
1,654,186 - -1.1
1,654,306 + AO353_07515 0.16 +0.7
1,654,306 + AO353_07515 0.16 -1.9
1,654,641 + AO353_07515 0.62 +0.1
1,654,769 - AO353_07515 0.79 -0.7
1,654,967 + -0.7
1,654,967 + -4.2
1,654,967 + -2.3
1,654,967 + -1.3
1,654,967 + -2.2
1,654,967 + -1.8
1,654,967 + -1.6
1,654,967 + -1.3
1,654,967 + -3.2
1,654,967 + +0.2
1,654,967 + -2.9
1,654,967 + -3.6
1,654,968 - -1.4
1,654,968 - -1.6
1,654,968 - -1.3
1,654,968 - -2.3
1,654,968 - -3.5
1,654,968 - -1.9
1,654,968 - -1.3
1,654,968 - -1.4
1,654,968 - -2.9
1,654,968 - -1.0
1,654,968 - -1.4
1,654,973 + -1.4
1,654,973 + -1.2
1,654,973 + -1.8
1,654,973 + -1.3
1,654,973 + -2.4
1,654,974 - -1.0
1,654,974 - +1.5
1,654,974 - -0.5
1,654,974 - -0.8
1,654,974 - +1.5
1,654,974 - -1.6
1,654,974 - -0.7
1,654,974 - -2.6
1,654,974 - -0.5
1,654,974 - -2.4
1,654,974 - -2.9

Or see this region's nucleotide sequence