Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03585

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03580 and AO353_03585 are separated by 0 nucleotidesAO353_03585 and AO353_03590 are separated by 118 nucleotidesAO353_03590 and AO353_03595 are separated by 203 nucleotides AO353_03580: AO353_03580 - ATP-dependent DNA helicase RuvB, at 764,872 to 765,933 _03580 AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542 _03585 AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185 _03590 AO353_03595: AO353_03595 - hypothetical protein, at 767,389 to 768,135 _03595 Position (kb) 765 766 767Strain fitness (log2 ratio) -2 -1 0 1at 764.954 kb on + strandat 764.954 kb on + strandat 764.955 kb on - strandat 764.955 kb on - strandat 764.997 kb on + strand, within AO353_03580at 764.999 kb on + strand, within AO353_03580at 764.999 kb on + strand, within AO353_03580at 765.198 kb on + strand, within AO353_03580at 765.198 kb on + strand, within AO353_03580at 765.199 kb on - strand, within AO353_03580at 765.205 kb on - strand, within AO353_03580at 765.205 kb on - strand, within AO353_03580at 765.274 kb on - strand, within AO353_03580at 765.376 kb on - strand, within AO353_03580at 765.548 kb on + strand, within AO353_03580at 765.836 kb on + strandat 765.837 kb on - strandat 765.935 kb on + strandat 765.936 kb on - strandat 765.936 kb on - strandat 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.583 kb on + strandat 766.654 kb on + strandat 766.654 kb on + strandat 766.654 kb on + strandat 766.655 kb on - strandat 766.831 kb on + strand, within AO353_03590at 766.882 kb on - strand, within AO353_03590at 766.882 kb on - strand, within AO353_03590at 767.080 kb on + strand, within AO353_03590at 767.103 kb on + strand, within AO353_03590at 767.103 kb on + strand, within AO353_03590at 767.104 kb on - strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.177 kb on + strandat 767.178 kb on - strandat 767.186 kb on - strandat 767.201 kb on - strandat 767.296 kb on + strandat 767.297 kb on - strandat 767.435 kb on + strandat 767.435 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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764,954 + -2.3
764,954 + -0.5
764,955 - -0.8
764,955 - -1.3
764,997 + AO353_03580 0.12 -1.5
764,999 + AO353_03580 0.12 -0.4
764,999 + AO353_03580 0.12 +0.6
765,198 + AO353_03580 0.31 -0.3
765,198 + AO353_03580 0.31 +0.6
765,199 - AO353_03580 0.31 -0.3
765,205 - AO353_03580 0.31 -1.4
765,205 - AO353_03580 0.31 -1.6
765,274 - AO353_03580 0.38 -2.3
765,376 - AO353_03580 0.47 -1.1
765,548 + AO353_03580 0.64 -1.6
765,836 + -0.8
765,837 - +1.2
765,935 + -0.1
765,936 - +0.5
765,936 - -1.5
766,480 + AO353_03585 0.90 -1.9
766,480 + AO353_03585 0.90 -0.8
766,480 + AO353_03585 0.90 -0.1
766,480 + AO353_03585 0.90 -1.8
766,481 - AO353_03585 0.90 +0.3
766,481 - AO353_03585 0.90 +0.6
766,481 - AO353_03585 0.90 -1.3
766,583 + -1.6
766,654 + +0.0
766,654 + -1.8
766,654 + -1.1
766,655 - -0.9
766,831 + AO353_03590 0.32 -1.6
766,882 - AO353_03590 0.42 -1.3
766,882 - AO353_03590 0.42 -0.7
767,080 + AO353_03590 0.80 -1.5
767,103 + AO353_03590 0.84 -0.4
767,103 + AO353_03590 0.84 +1.2
767,104 - AO353_03590 0.84 -0.1
767,129 + AO353_03590 0.89 -2.1
767,129 + AO353_03590 0.89 +0.4
767,129 + AO353_03590 0.89 -0.9
767,129 + AO353_03590 0.89 -2.3
767,177 + -0.6
767,178 - -1.5
767,186 - +1.1
767,201 - +0.8
767,296 + -0.7
767,297 - +1.0
767,435 + -1.1
767,435 + -0.5

Or see this region's nucleotide sequence