Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02345

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02340 and AO353_02345 are separated by 188 nucleotidesAO353_02345 and AO353_02350 are separated by 520 nucleotides AO353_02340: AO353_02340 - hypothetical protein, at 496,653 to 497,960 _02340 AO353_02345: AO353_02345 - purine permease, at 498,149 to 499,507 _02345 AO353_02350: AO353_02350 - hypothetical protein, at 500,028 to 500,813 _02350 Position (kb) 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 497.169 kb on + strand, within AO353_02340at 497.170 kb on - strand, within AO353_02340at 497.170 kb on - strand, within AO353_02340at 497.211 kb on - strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.328 kb on + strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.329 kb on - strand, within AO353_02340at 497.382 kb on + strand, within AO353_02340at 497.382 kb on + strand, within AO353_02340at 497.383 kb on - strand, within AO353_02340at 497.383 kb on - strand, within AO353_02340at 497.383 kb on - strand, within AO353_02340at 497.395 kb on - strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.448 kb on + strand, within AO353_02340at 497.449 kb on - strand, within AO353_02340at 497.526 kb on + strand, within AO353_02340at 497.526 kb on + strand, within AO353_02340at 497.527 kb on - strand, within AO353_02340at 497.716 kb on + strand, within AO353_02340at 497.716 kb on + strand, within AO353_02340at 497.716 kb on + strand, within AO353_02340at 497.716 kb on + strand, within AO353_02340at 497.716 kb on + strand, within AO353_02340at 497.716 kb on + strand, within AO353_02340at 497.717 kb on - strand, within AO353_02340at 497.717 kb on - strand, within AO353_02340at 497.717 kb on - strand, within AO353_02340at 497.717 kb on - strand, within AO353_02340at 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.958 kb on + strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.959 kb on - strandat 497.965 kb on + strandat 497.965 kb on + strandat 497.965 kb on + strandat 497.965 kb on + strandat 497.965 kb on + strandat 497.965 kb on + strandat 497.966 kb on - strandat 497.966 kb on - strandat 498.103 kb on - strandat 498.103 kb on - strandat 498.127 kb on + strandat 498.127 kb on + strandat 498.128 kb on - strandat 498.128 kb on - strandat 498.128 kb on - strandat 498.251 kb on + strandat 498.251 kb on + strandat 498.252 kb on - strandat 498.252 kb on - strandat 498.252 kb on - strandat 498.252 kb on - strandat 498.252 kb on - strandat 498.448 kb on - strand, within AO353_02345at 498.448 kb on - strand, within AO353_02345at 498.448 kb on - strand, within AO353_02345at 498.674 kb on + strand, within AO353_02345at 498.697 kb on - strand, within AO353_02345at 498.697 kb on - strand, within AO353_02345at 498.779 kb on + strand, within AO353_02345at 498.779 kb on + strand, within AO353_02345at 498.779 kb on + strand, within AO353_02345at 498.780 kb on - strand, within AO353_02345at 498.780 kb on - strand, within AO353_02345at 498.780 kb on - strand, within AO353_02345at 499.081 kb on + strand, within AO353_02345at 499.452 kb on + strandat 499.452 kb on + strandat 499.453 kb on - strandat 499.512 kb on + strandat 499.512 kb on + strandat 499.569 kb on + strandat 499.570 kb on - strandat 499.595 kb on + strandat 499.596 kb on - strandat 499.630 kb on - strandat 499.635 kb on + strandat 499.635 kb on + strandat 499.635 kb on + strandat 499.635 kb on + strandat 499.636 kb on - strandat 499.636 kb on - strandat 499.719 kb on + strandat 499.719 kb on + strandat 499.720 kb on - strandat 499.748 kb on - strandat 499.765 kb on + strandat 499.825 kb on + strandat 499.825 kb on + strandat 499.825 kb on + strandat 499.825 kb on + strandat 499.947 kb on + strandat 499.947 kb on + strandat 500.010 kb on + strandat 500.010 kb on + strandat 500.010 kb on + strandat 500.011 kb on - strandat 500.036 kb on + strandat 500.036 kb on + strandat 500.036 kb on + strandat 500.036 kb on + strandat 500.036 kb on + strandat 500.036 kb on + strandat 500.036 kb on + strandat 500.037 kb on - strandat 500.037 kb on - strandat 500.037 kb on - strandat 500.046 kb on - strandat 500.130 kb on + strand, within AO353_02350at 500.130 kb on + strand, within AO353_02350at 500.130 kb on + strand, within AO353_02350at 500.130 kb on + strand, within AO353_02350at 500.130 kb on + strand, within AO353_02350at 500.130 kb on + strand, within AO353_02350at 500.131 kb on - strand, within AO353_02350at 500.131 kb on - strand, within AO353_02350at 500.131 kb on - strand, within AO353_02350at 500.131 kb on - strand, within AO353_02350at 500.131 kb on - strand, within AO353_02350at 500.208 kb on + strand, within AO353_02350at 500.208 kb on + strand, within AO353_02350at 500.244 kb on + strand, within AO353_02350at 500.245 kb on - strand, within AO353_02350at 500.245 kb on - strand, within AO353_02350at 500.245 kb on - strand, within AO353_02350at 500.265 kb on + strand, within AO353_02350at 500.266 kb on - strand, within AO353_02350at 500.266 kb on - strand, within AO353_02350at 500.277 kb on - strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.283 kb on + strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strandat 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.284 kb on - strand, within AO353_02350at 500.286 kb on + strand, within AO353_02350at 500.286 kb on + strand, within AO353_02350at 500.286 kb on + strand, within AO353_02350at 500.286 kb on + strand, within AO353_02350at 500.287 kb on - strand, within AO353_02350at 500.287 kb on - strand, within AO353_02350at 500.287 kb on - strand, within AO353_02350at 500.287 kb on - strand, within AO353_02350at 500.287 kb on - strand, within AO353_02350at 500.379 kb on + strand, within AO353_02350at 500.379 kb on + strand, within AO353_02350at 500.380 kb on - strand, within AO353_02350at 500.380 kb on - strand, within AO353_02350at 500.409 kb on + strand, within AO353_02350at 500.409 kb on + strand, within AO353_02350at 500.409 kb on + strand, within AO353_02350at 500.409 kb on + strand, within AO353_02350at 500.409 kb on + strand, within AO353_02350at 500.454 kb on + strand, within AO353_02350at 500.454 kb on + strand, within AO353_02350at 500.454 kb on + strand, within AO353_02350at 500.455 kb on - strand, within AO353_02350at 500.455 kb on - strand, within AO353_02350at 500.472 kb on + strand, within AO353_02350at 500.472 kb on + strand, within AO353_02350at 500.472 kb on + strand, within AO353_02350at 500.473 kb on - strand, within AO353_02350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
497,169 + AO353_02340 0.39 -0.8
497,170 - AO353_02340 0.40 +0.8
497,170 - AO353_02340 0.40 -2.5
497,211 - AO353_02340 0.43 +0.1
497,328 + AO353_02340 0.52 -0.8
497,328 + AO353_02340 0.52 -0.7
497,328 + AO353_02340 0.52 -0.6
497,328 + AO353_02340 0.52 -0.6
497,328 + AO353_02340 0.52 -1.5
497,329 - AO353_02340 0.52 -0.3
497,329 - AO353_02340 0.52 -0.9
497,329 - AO353_02340 0.52 +0.7
497,329 - AO353_02340 0.52 -0.5
497,329 - AO353_02340 0.52 -1.2
497,329 - AO353_02340 0.52 -0.2
497,329 - AO353_02340 0.52 -0.5
497,329 - AO353_02340 0.52 -0.5
497,329 - AO353_02340 0.52 -0.5
497,329 - AO353_02340 0.52 -1.2
497,329 - AO353_02340 0.52 -0.5
497,329 - AO353_02340 0.52 -1.2
497,329 - AO353_02340 0.52 -1.2
497,382 + AO353_02340 0.56 -0.2
497,382 + AO353_02340 0.56 -0.5
497,383 - AO353_02340 0.56 -0.5
497,383 - AO353_02340 0.56 -2.0
497,383 - AO353_02340 0.56 -0.4
497,395 - AO353_02340 0.57 -0.7
497,448 + AO353_02340 0.61 -0.4
497,448 + AO353_02340 0.61 -0.2
497,448 + AO353_02340 0.61 -0.7
497,448 + AO353_02340 0.61 -2.1
497,448 + AO353_02340 0.61 -3.0
497,449 - AO353_02340 0.61 -0.6
497,526 + AO353_02340 0.67 +0.7
497,526 + AO353_02340 0.67 +0.8
497,527 - AO353_02340 0.67 -1.7
497,716 + AO353_02340 0.81 -0.3
497,716 + AO353_02340 0.81 -2.1
497,716 + AO353_02340 0.81 -1.3
497,716 + AO353_02340 0.81 -1.1
497,716 + AO353_02340 0.81 +0.1
497,716 + AO353_02340 0.81 -1.5
497,717 - AO353_02340 0.81 +0.9
497,717 - AO353_02340 0.81 +1.4
497,717 - AO353_02340 0.81 -0.7
497,717 - AO353_02340 0.81 -0.2
497,958 + +0.2
497,958 + +0.5
497,958 + +0.0
497,958 + +0.4
497,958 + +0.5
497,958 + +1.1
497,958 + -0.4
497,958 + +0.3
497,958 + +1.8
497,958 + -0.6
497,959 - +0.1
497,959 - -1.1
497,959 - -1.6
497,959 - -0.6
497,959 - +1.8
497,959 - +0.5
497,959 - +1.0
497,959 - +0.7
497,959 - -0.0
497,959 - +0.2
497,959 - -0.4
497,959 - -2.0
497,965 + -0.7
497,965 + +0.5
497,965 + +0.5
497,965 + +0.2
497,965 + +0.4
497,965 + +0.3
497,966 - -0.1
497,966 - +0.6
498,103 - -0.3
498,103 - -0.1
498,127 + -0.7
498,127 + +0.8
498,128 - -1.1
498,128 - -2.4
498,128 - +0.9
498,251 + +0.2
498,251 + -0.1
498,252 - +0.2
498,252 - -0.2
498,252 - -1.1
498,252 - +0.9
498,252 - +0.5
498,448 - AO353_02345 0.22 +0.4
498,448 - AO353_02345 0.22 +0.1
498,448 - AO353_02345 0.22 -0.1
498,674 + AO353_02345 0.39 +0.6
498,697 - AO353_02345 0.40 -0.5
498,697 - AO353_02345 0.40 -1.1
498,779 + AO353_02345 0.46 +1.0
498,779 + AO353_02345 0.46 +0.4
498,779 + AO353_02345 0.46 -0.5
498,780 - AO353_02345 0.46 -0.4
498,780 - AO353_02345 0.46 +0.7
498,780 - AO353_02345 0.46 -0.2
499,081 + AO353_02345 0.69 -0.3
499,452 + -1.0
499,452 + -0.4
499,453 - +0.6
499,512 + -0.6
499,512 + -1.2
499,569 + -0.8
499,570 - -0.1
499,595 + +0.0
499,596 - -0.3
499,630 - +0.6
499,635 + -1.8
499,635 + -1.1
499,635 + +0.2
499,635 + -0.0
499,636 - +0.4
499,636 - +0.6
499,719 + +0.2
499,719 + +0.9
499,720 - -0.5
499,748 - -1.1
499,765 + -0.1
499,825 + +0.6
499,825 + -0.1
499,825 + -0.2
499,825 + -0.2
499,947 + +0.8
499,947 + +1.2
500,010 + -0.8
500,010 + -1.4
500,010 + +0.1
500,011 - +0.0
500,036 + +0.6
500,036 + +0.3
500,036 + +0.8
500,036 + +1.0
500,036 + +0.1
500,036 + -2.2
500,036 + +0.6
500,037 - +1.1
500,037 - +0.9
500,037 - +0.6
500,046 - +1.3
500,130 + AO353_02350 0.13 +0.2
500,130 + AO353_02350 0.13 -0.3
500,130 + AO353_02350 0.13 +0.1
500,130 + AO353_02350 0.13 -1.1
500,130 + AO353_02350 0.13 +0.6
500,130 + AO353_02350 0.13 +0.5
500,131 - AO353_02350 0.13 +1.6
500,131 - AO353_02350 0.13 -0.8
500,131 - AO353_02350 0.13 -0.9
500,131 - AO353_02350 0.13 -1.7
500,131 - AO353_02350 0.13 -0.6
500,208 + AO353_02350 0.23 -0.3
500,208 + AO353_02350 0.23 +0.7
500,244 + AO353_02350 0.27 +1.1
500,245 - AO353_02350 0.28 +0.1
500,245 - AO353_02350 0.28 +0.1
500,245 - AO353_02350 0.28 -1.1
500,265 + AO353_02350 0.30 -0.2
500,266 - AO353_02350 0.30 +0.4
500,266 - AO353_02350 0.30 +0.5
500,277 - AO353_02350 0.32 +0.4
500,283 + AO353_02350 0.32 -0.1
500,283 + AO353_02350 0.32 -0.2
500,283 + AO353_02350 0.32 +0.6
500,283 + AO353_02350 0.32 +0.3
500,283 + AO353_02350 0.32 -0.5
500,283 + AO353_02350 0.32 -1.1
500,283 + AO353_02350 0.32 -0.2
500,283 + AO353_02350 0.32 +2.1
500,283 + AO353_02350 0.32 +0.5
500,283 + AO353_02350 0.32 +0.6
500,283 + AO353_02350 0.32 +0.1
500,283 + AO353_02350 0.32 -0.4
500,283 + AO353_02350 0.32 +1.2
500,283 + AO353_02350 0.32 +0.7
500,283 + AO353_02350 0.32 +0.3
500,284 - AO353_02350 0.33 -0.3
500,284 - AO353_02350 0.33 -1.1
500,284 - AO353_02350 0.33 -1.3
500,284 - -0.7
500,284 - AO353_02350 0.33 -1.9
500,284 - AO353_02350 0.33 -1.8
500,284 - AO353_02350 0.33 +1.2
500,284 - AO353_02350 0.33 +1.3
500,284 - AO353_02350 0.33 +0.7
500,284 - AO353_02350 0.33 -0.2
500,284 - AO353_02350 0.33 -0.3
500,286 + AO353_02350 0.33 -0.6
500,286 + AO353_02350 0.33 -1.4
500,286 + AO353_02350 0.33 -1.5
500,286 + AO353_02350 0.33 +0.7
500,287 - AO353_02350 0.33 -1.4
500,287 - AO353_02350 0.33 -1.7
500,287 - AO353_02350 0.33 +0.2
500,287 - AO353_02350 0.33 +0.7
500,287 - AO353_02350 0.33 +1.0
500,379 + AO353_02350 0.45 +1.2
500,379 + AO353_02350 0.45 -0.6
500,380 - AO353_02350 0.45 -0.6
500,380 - AO353_02350 0.45 -0.2
500,409 + AO353_02350 0.48 +0.2
500,409 + AO353_02350 0.48 -0.1
500,409 + AO353_02350 0.48 +0.8
500,409 + AO353_02350 0.48 -0.5
500,409 + AO353_02350 0.48 -1.2
500,454 + AO353_02350 0.54 -0.2
500,454 + AO353_02350 0.54 +0.5
500,454 + AO353_02350 0.54 +1.1
500,455 - AO353_02350 0.54 -1.2
500,455 - AO353_02350 0.54 -0.8
500,472 + AO353_02350 0.56 +0.2
500,472 + AO353_02350 0.56 -0.9
500,472 + AO353_02350 0.56 -0.6
500,473 - AO353_02350 0.57 -0.2

Or see this region's nucleotide sequence