Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3513

Experiment: copper (II) chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 1 mM
4,532,505	+		BT3512	0.63	-1.9
4,532,559	+		BT3512	0.65	-1.0
4,532,560	-		BT3512	0.65	-0.8
4,532,560	-		BT3512	0.65	-0.0
4,532,616	-		BT3512	0.68	-0.5
4,532,650	+		BT3512	0.69	+0.5
4,532,653	-		BT3512	0.69	-1.0
4,532,655	+		BT3512	0.69	-1.0
4,532,655	+		BT3512	0.69	-0.3
4,532,751	+		BT3512	0.73	-1.2
4,532,751	+		BT3512	0.73	-0.8
4,532,751	+		BT3512	0.73	+0.0
4,532,752	-		BT3512	0.73	-1.2
4,532,842	+		BT3512	0.77	-0.5
4,532,842	+		BT3512	0.77	-1.1
4,532,922	+		BT3512	0.80	-0.0
4,532,928	-		BT3512	0.80	-0.0
4,532,928	-		BT3512	0.80	-0.2
4,532,935	+		BT3512	0.80	-1.0
4,532,935	+		BT3512	0.80	-0.3
4,532,971	+		BT3512	0.82	-1.1
4,533,167	+		BT3512	0.89	+0.3
4,533,194	+				-0.5
4,533,195	-				+0.5
4,533,292	+				+0.2
4,533,301	-				-2.0
4,533,301	-				-2.1
4,533,419	+				-0.3
4,533,420	-				-0.7
4,533,425	-				-0.5
4,533,435	-				-0.9
4,533,507	-				-0.4
4,533,523	+				-1.8
4,533,571	+				-0.2
4,533,571	+				+0.5
4,533,571	+				-1.4
4,533,627	+		BT3513	0.10	-0.9
4,533,631	+		BT3513	0.10	-1.0
4,533,638	+		BT3513	0.11	-1.1
4,533,717	-		BT3513	0.15	+0.2
4,533,720	+		BT3513	0.15	+0.4
4,533,769	+		BT3513	0.18	-0.7
4,533,770	-		BT3513	0.18	-0.6
4,533,956	-		BT3513	0.28	-0.7
4,533,956	-		BT3513	0.28	+1.1
4,534,037	-		BT3513	0.33	+3.1
4,534,037	-		BT3513	0.33	-1.1
4,534,037	-		BT3513	0.33	-2.1
4,534,039	+		BT3513	0.33	-2.0
4,534,040	-		BT3513	0.33	-1.2
4,534,040	-		BT3513	0.33	-0.3
4,534,120	+		BT3513	0.37	-0.5
4,534,126	+		BT3513	0.38	-0.3
4,534,201	+		BT3513	0.42	-1.6
4,534,204	-		BT3513	0.42	+0.1
4,534,204	-		BT3513	0.42	+0.4
4,534,233	+		BT3513	0.43	-0.8
4,534,234	-		BT3513	0.44	+0.3
4,534,307	+		BT3513	0.48	+0.4
4,534,325	+		BT3513	0.49	-1.5
4,534,354	+		BT3513	0.50	+0.9
4,534,355	-		BT3513	0.50	+0.5
4,534,406	+		BT3513	0.53	+1.5
4,534,462	-		BT3513	0.56	-0.1
4,534,551	+		BT3513	0.61	-0.7
4,534,552	-		BT3513	0.61	+1.5
4,534,552	-		BT3513	0.61	+0.7
4,534,564	-		BT3513	0.62	+0.5
4,534,564	-		BT3513	0.62	-0.2
4,534,620	-		BT3513	0.65	-0.6
4,534,648	-		BT3513	0.66	-0.3
4,534,662	-		BT3513	0.67	-2.9
4,534,677	-		BT3513	0.68	-0.6
4,534,791	-		BT3513	0.74	-1.6
4,534,801	+		BT3513	0.75	-1.6
4,534,823	+		BT3513	0.76	+0.2
4,534,823	+		BT3513	0.76	+0.5
4,534,824	-		BT3513	0.76	-1.0
4,534,833	+		BT3513	0.77	+0.5
4,534,855	-		BT3513	0.78	-0.6
4,534,855	-		BT3513	0.78	+0.9
4,534,893	+		BT3513	0.80	-1.5
4,534,893	+		BT3513	0.80	-0.1
4,534,893	+		BT3513	0.80	+2.3
4,534,894	-		BT3513	0.80	+1.0
4,534,921	-		BT3513	0.81	-1.3
4,534,970	+		BT3513	0.84	-1.1
4,534,971	-		BT3513	0.84	-0.4
4,534,971	-		BT3513	0.84	-1.6
4,534,975	-		BT3513	0.84	-1.3
4,535,075	+		BT3513	0.90	+1.5
4,535,130	+				+0.5
4,535,173	-				-2.4
4,535,173	-				-1.6
4,535,262	-				-1.5
4,535,272	-				-1.1
4,535,285	-				-1.9
4,535,302	+				-0.3
4,535,444	-				-0.1
4,535,452	+				+0.1
4,535,455	-				+0.5
4,535,537	-				-0.3
4,535,537	-				-1.9
4,535,573	+				-0.3
4,535,573	-				-0.6
4,535,575	+				-1.1
4,535,611	+				-1.5
4,535,612	-				-0.5
4,535,640	-				-1.2
4,535,643	+				+3.1
4,535,684	-				+0.1
4,535,718	-				-0.0
4,535,810	+				-1.1
4,535,811	-				-1.3
4,535,811	-				+1.0
4,535,819	+				-0.8
4,535,870	-		BT3514	0.11	-0.6
4,535,874	-		BT3514	0.11	-0.3
4,535,874	-		BT3514	0.11	-0.8
4,535,957	-		BT3514	0.14	-0.0
4,536,137	-		BT3514	0.20	-2.8
4,536,254	+		BT3514	0.24	-0.5
4,536,255	-		BT3514	0.24	+0.3