Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0297 and BT0298 are separated by 7 nucleotides BT0298 and BT0299 are separated by 48 nucleotides
BT0297: BT0297 - putative outer membrane lipoprotein silC precursor (NCBI ptt file), at 349,074 to 350,570
BT0297
BT0298: BT0298 - cation efflux system protein (outer membrane protein) (NCBI ptt file), at 350,578 to 351,639
BT0298
BT0299: BT0299 - cation efflux system (AcrB/AcrD/AcrF family) (NCBI ptt file), at 351,688 to 354,804
BT0299
Position (kb) 350
351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 349.579 kb on + strand, within BT0297 at 349.604 kb on + strand, within BT0297 at 349.682 kb on + strand, within BT0297 at 349.729 kb on - strand, within BT0297 at 350.002 kb on + strand, within BT0297 at 350.359 kb on - strand, within BT0297 at 350.480 kb on - strand at 350.485 kb on + strand at 350.668 kb on - strand at 350.730 kb on + strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.864 kb on + strand, within BT0298 at 351.007 kb on - strand, within BT0298 at 351.172 kb on + strand, within BT0298 at 351.185 kb on - strand, within BT0298 at 351.247 kb on - strand, within BT0298 at 351.507 kb on - strand, within BT0298 at 351.539 kb on - strand at 351.539 kb on - strand at 351.638 kb on - strand at 351.654 kb on - strand at 351.655 kb on + strand at 351.656 kb on - strand at 351.656 kb on - strand at 351.740 kb on + strand at 351.770 kb on + strand at 351.775 kb on + strand at 351.814 kb on - strand at 351.888 kb on + strand at 351.969 kb on - strand at 351.973 kb on + strand at 351.973 kb on + strand at 351.974 kb on - strand at 351.974 kb on - strand at 351.975 kb on + strand at 352.050 kb on + strand, within BT0299 at 352.050 kb on + strand, within BT0299 at 352.128 kb on + strand, within BT0299 at 352.166 kb on - strand, within BT0299 at 352.239 kb on + strand, within BT0299 at 352.259 kb on - strand, within BT0299 at 352.261 kb on - strand, within BT0299 at 352.294 kb on - strand, within BT0299 at 352.363 kb on + strand, within BT0299 at 352.363 kb on + strand, within BT0299 at 352.494 kb on + strand, within BT0299 at 352.582 kb on - strand, within BT0299 at 352.625 kb on + strand, within BT0299
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 349,579 + BT0297 0.34 -0.4 349,604 + BT0297 0.35 -2.2 349,682 + BT0297 0.41 -2.4 349,729 - BT0297 0.44 -1.9 350,002 + BT0297 0.62 +2.9 350,359 - BT0297 0.86 +1.6 350,480 - +1.0 350,485 + -1.8 350,668 - -0.4 350,730 + BT0298 0.14 -2.4 350,756 - BT0298 0.17 -1.4 350,756 - BT0298 0.17 +1.0 350,864 + BT0298 0.27 -0.2 351,007 - BT0298 0.40 +0.6 351,172 + BT0298 0.56 +1.6 351,185 - BT0298 0.57 -1.7 351,247 - BT0298 0.63 -0.4 351,507 - BT0298 0.87 -3.2 351,539 - +0.6 351,539 - -1.4 351,638 - +0.6 351,654 - -1.2 351,655 + -0.7 351,656 - -1.4 351,656 - +0.6 351,740 + +1.6 351,770 + -0.6 351,775 + +0.0 351,814 - -1.4 351,888 + -1.4 351,969 - -1.0 351,973 + +0.7 351,973 + -0.7 351,974 - +0.3 351,974 - -1.6 351,975 + +0.2 352,050 + BT0299 0.12 +0.3 352,050 + BT0299 0.12 -0.4 352,128 + BT0299 0.14 -1.2 352,166 - BT0299 0.15 +0.0 352,239 + BT0299 0.18 +0.3 352,259 - BT0299 0.18 -1.2 352,261 - BT0299 0.18 -2.3 352,294 - BT0299 0.19 -0.8 352,363 + BT0299 0.22 -1.2 352,363 + BT0299 0.22 +0.0 352,494 + BT0299 0.26 -0.4 352,582 - BT0299 0.29 -0.9 352,625 + BT0299 0.30 +0.0
Or see this region's nucleotide sequence