Strain Fitness in Pantoea sp. MT58 around IAI47_16245

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
3,439,655	+				+1.2
3,439,655	+				-3.3
3,439,656	-				+2.4
3,439,656	-				+1.7
3,439,659	-				-0.9
3,439,675	+				+2.2
3,439,675	+				+2.2
3,439,676	-				+0.8
3,439,676	-				-1.7
3,439,692	+				-0.3
3,439,692	+				-3.2
3,439,692	+				+1.0
3,439,692	+				+1.7
3,439,693	-				-1.5
3,439,704	+				+0.5
3,439,704	+				-1.0
3,439,704	+				+2.3
3,439,704	+				-0.3
3,439,806	+		IAI47_16240	0.11	-3.1
3,439,806	+		IAI47_16240	0.11	+2.3
3,439,806	+		IAI47_16240	0.11	+2.7
3,439,807	-		IAI47_16240	0.12	+1.2
3,439,807	-		IAI47_16240	0.12	+0.7
3,439,807	-		IAI47_16240	0.12	+2.2
3,439,807	-		IAI47_16240	0.12	+0.4
3,439,861	+		IAI47_16240	0.18	-1.4
3,439,861	+		IAI47_16240	0.18	-0.1
3,439,861	+		IAI47_16240	0.18	-0.6
3,439,862	-		IAI47_16240	0.18	+0.5
3,439,862	-		IAI47_16240	0.18	+1.1
3,439,862	-		IAI47_16240	0.18	+0.4
3,439,862	-		IAI47_16240	0.18	+0.1
3,439,862	-		IAI47_16240	0.18	+1.3
3,439,862	-		IAI47_16240	0.18	-0.1
3,439,862	-		IAI47_16240	0.18	-1.6
3,439,862	-		IAI47_16240	0.18	+1.7
3,439,864	-		IAI47_16240	0.18	+1.3
3,439,969	-		IAI47_16240	0.30	+1.2
3,440,137	+		IAI47_16240	0.49	-3.2
3,440,137	+		IAI47_16240	0.49	-0.6
3,440,137	+		IAI47_16240	0.49	-2.3
3,440,137	+		IAI47_16240	0.49	-3.0
3,440,137	+		IAI47_16240	0.49	-2.0
3,440,137	+		IAI47_16240	0.49	-2.4
3,440,137	+		IAI47_16240	0.49	-1.6
3,440,137	+		IAI47_16240	0.49	-3.2
3,440,137	+		IAI47_16240	0.49	-1.8
3,440,137	+		IAI47_16240	0.49	+0.7
3,440,137	+		IAI47_16240	0.49	+1.7
3,440,137	+		IAI47_16240	0.49	-0.3
3,440,137	+		IAI47_16240	0.49	+0.7
3,440,137	+		IAI47_16240	0.49	-0.8
3,440,137	+		IAI47_16240	0.49	-4.0
3,440,138	-		IAI47_16240	0.49	-1.0
3,440,138	-		IAI47_16240	0.49	+0.2
3,440,138	-		IAI47_16240	0.49	+0.0
3,440,138	-		IAI47_16240	0.49	-0.4
3,440,138	-		IAI47_16240	0.49	-1.4
3,440,138	-		IAI47_16240	0.49	+0.0
3,440,138	-		IAI47_16240	0.49	-0.5
3,440,138	-		IAI47_16240	0.49	-0.3
3,440,138	-		IAI47_16240	0.49	-1.3
3,440,146	-		IAI47_16240	0.50	+0.9
3,440,168	-		IAI47_16240	0.52	-1.1
3,440,240	-		IAI47_16240	0.60	-1.6
3,440,240	-		IAI47_16240	0.60	-0.1
3,440,296	+		IAI47_16240	0.67	+0.1
3,440,296	+		IAI47_16240	0.67	+1.4
3,440,297	-		IAI47_16240	0.67	+0.9
3,440,297	-		IAI47_16240	0.67	-2.2
3,440,297	-		IAI47_16240	0.67	-1.3
3,440,298	+		IAI47_16240	0.67	-0.4
3,440,298	+		IAI47_16240	0.67	+0.2
3,440,299	-		IAI47_16240	0.67	+0.1
3,440,299	-		IAI47_16240	0.67	+0.3
3,440,299	-		IAI47_16240	0.67	-2.6
3,440,299	-		IAI47_16240	0.67	-2.6
3,440,371	+		IAI47_16240	0.75	-0.5
3,440,371	+		IAI47_16240	0.75	+0.4
3,440,371	+		IAI47_16240	0.75	-0.7
3,440,371	+		IAI47_16240	0.75	-2.4
3,440,371	+		IAI47_16240	0.75	+0.1
3,440,371	+		IAI47_16240	0.75	+1.3
3,440,372	-		IAI47_16240	0.75	+0.2
3,440,372	-		IAI47_16240	0.75	+0.0
3,440,432	-		IAI47_16240	0.82	+1.3
3,440,432	-		IAI47_16240	0.82	+2.4
3,440,437	-		IAI47_16240	0.83	+0.9
3,440,481	+		IAI47_16240	0.88	-0.8
3,440,482	-		IAI47_16240	0.88	+0.7
3,440,482	-		IAI47_16240	0.88	-0.1
3,440,494	+		IAI47_16240	0.89	-0.2
3,440,494	+		IAI47_16240	0.89	+2.7
3,440,495	-		IAI47_16240	0.89	-3.3
3,440,495	-		IAI47_16240	0.89	+0.4
3,440,495	-		IAI47_16240	0.89	+0.7
3,440,495	-		IAI47_16240	0.89	+0.3
3,440,496	+		IAI47_16240	0.89	+2.3
3,440,497	-		IAI47_16240	0.89	+2.3
3,440,497	-		IAI47_16240	0.89	-1.1
3,440,497	-		IAI47_16240	0.89	-0.5
3,440,497	-		IAI47_16240	0.89	+0.9
3,440,533	+				+1.0
3,440,549	-				-0.6
3,440,587	+				+1.5
3,440,588	-				+0.1
3,440,588	-				+1.7
3,440,588	-				-2.6
3,440,588	-				+2.0
3,440,593	+				+1.1
3,440,594	-				-0.9
3,440,622	+				+0.6
3,440,622	+				+2.8
3,440,622	+				-0.1
3,440,622	+				+2.2
3,440,623	-				+0.3
3,440,623	-				-1.8
3,440,673	+				+0.6
3,440,674	-				+0.6
3,440,674	-				+2.3
3,440,674	-				-1.1
3,440,689	+				+1.2
3,440,689	+				+3.3
3,440,690	-				+0.1
3,440,726	+		IAI47_16245	0.15	-0.6
3,440,726	+		IAI47_16245	0.15	+2.0
3,440,742	+		IAI47_16245	0.17	-1.7
3,440,742	+		IAI47_16245	0.17	-0.4
3,440,743	-		IAI47_16245	0.18	-0.8
3,440,743	-		IAI47_16245	0.18	+1.6
3,440,751	+		IAI47_16245	0.19	+0.1
3,440,751	+		IAI47_16245	0.19	-1.7
3,440,751	+		IAI47_16245	0.19	+0.1
3,440,751	+		IAI47_16245	0.19	+1.3
3,440,751	+		IAI47_16245	0.19	+0.7
3,440,752	-		IAI47_16245	0.19	-0.1
3,440,752	-		IAI47_16245	0.19	-0.7
3,440,777	+		IAI47_16245	0.23	+0.3
3,440,799	+		IAI47_16245	0.26	+0.0
3,440,799	+		IAI47_16245	0.26	+0.1
3,440,799	+		IAI47_16245	0.26	+1.4
3,440,800	-		IAI47_16245	0.26	+1.2
3,440,800	-		IAI47_16245	0.26	+0.8
3,440,823	+		IAI47_16245	0.30	-0.4
3,440,823	+		IAI47_16245	0.30	+1.8
3,440,823	+		IAI47_16245	0.30	+1.9
3,440,990	-		IAI47_16245	0.56	+2.0
3,440,990	-		IAI47_16245	0.56	+0.4
3,440,990	-		IAI47_16245	0.56	+1.5
3,441,024	+		IAI47_16245	0.61	+1.1
3,441,024	+		IAI47_16245	0.61	-3.9
3,441,024	+		IAI47_16245	0.61	-2.0
3,441,024	+		IAI47_16245	0.61	+2.1
3,441,024	+		IAI47_16245	0.61	-2.4
3,441,025	-		IAI47_16245	0.61	+0.8
3,441,123	+		IAI47_16245	0.76	+0.0
3,441,123	+		IAI47_16245	0.76	+1.0
3,441,123	+		IAI47_16245	0.76	+0.2
3,441,123	+		IAI47_16245	0.76	+1.4
3,441,123	+		IAI47_16245	0.76	+1.2
3,441,123	+		IAI47_16245	0.76	+1.2
3,441,123	+		IAI47_16245	0.76	+1.4
3,441,123	+		IAI47_16245	0.76	+0.3
3,441,123	+		IAI47_16245	0.76	+2.6
3,441,124	-		IAI47_16245	0.76	+1.4
3,441,124	-		IAI47_16245	0.76	+1.7
3,441,124	-		IAI47_16245	0.76	+1.1
3,441,124	-		IAI47_16245	0.76	-1.5
3,441,173	-		IAI47_16245	0.84	+2.4
3,441,219	+				+0.3
3,441,220	-				+0.3
3,441,263	+				-2.3
3,441,263	+				+1.4
3,441,263	+				-1.3
3,441,264	-				-0.3
3,441,264	-				+2.8
3,441,264	-				+3.0
3,441,264	-				+0.9
3,441,264	-				+0.5
3,441,264	-				+0.9
3,441,271	+				+0.5
3,441,271	+				+2.2
3,441,271	+				-2.2
3,441,271	+				+0.0
3,441,271	+				+0.1
3,441,271	+				+0.1
3,441,271	+				+0.4
3,441,271	+				-1.7
3,441,271	+				+2.3
3,441,271	+				-3.3
3,441,272	-				+1.4
3,441,272	-				+1.2
3,441,272	-				+0.4
3,441,272	-				+0.4
3,441,272	-				+1.0
3,441,272	-				+1.7
3,441,272	-				+1.0
3,441,279	+				+1.4
3,441,279	+				+1.6
3,441,280	-				+0.5
3,441,280	-				+2.2
3,441,280	-				+1.5
3,441,280	-				-1.5
3,441,290	-				-0.6
3,441,291	+				+3.3
3,441,291	+				+0.1
3,441,291	+				+2.7
3,441,291	+				+0.4
3,441,292	-				+2.7
3,441,312	-				-2.1
3,441,389	+				+0.6
3,441,389	+				+1.6
3,441,389	+				-1.7
3,441,390	-				-1.4
3,441,390	-				+0.6
3,441,390	-				-2.3
3,441,390	-				+3.1
3,441,457	+				-0.8
3,441,458	-				-1.1
3,441,473	+				-0.6
3,441,481	+				+0.3
3,441,481	+				-1.1
3,441,481	+				+1.7
3,441,481	+				+3.7
3,441,481	+				+1.6
3,441,481	+				-1.1
3,441,481	+				+1.0
3,441,481	+				+0.8
3,441,481	+				-2.2
3,441,482	-				-1.3
3,441,482	-				+0.7
3,441,482	-				-0.1
3,441,482	-				+1.4
3,441,482	-				+2.6
3,441,482	-				+0.9
3,441,482	-				+1.1
3,441,482	-				-1.4
3,441,482	-				-3.7
3,441,482	-				+0.7
3,441,482	-				+2.6
3,441,482	-				-0.6
3,441,485	+				+1.9
3,441,485	+				-1.7
3,441,485	+				+1.5
3,441,485	+				-1.6
3,441,485	+				+0.2
3,441,486	-				-2.5
3,441,486	-				+0.4
3,441,486	-				-0.0
3,441,486	-				+2.1
3,441,486	-				-2.5
3,441,486	-				+1.1
3,441,486	-				+2.6
3,441,486	-				+0.8
3,441,486	-				-1.6
3,441,486	-				-0.9
3,441,574	+		IAI47_16250	0.18	-0.2
3,441,574	+		IAI47_16250	0.18	-1.5
3,441,574	+		IAI47_16250	0.18	+0.6
3,441,575	-		IAI47_16250	0.18	+0.5
3,441,575	-		IAI47_16250	0.18	-0.2
3,441,877	+		IAI47_16250	0.76	+1.7
3,441,877	+		IAI47_16250	0.76	+2.3
3,441,877	+		IAI47_16250	0.76	+2.6
3,441,878	-		IAI47_16250	0.76	+1.7
3,441,941	+		IAI47_16250	0.88	+2.2
3,441,941	+		IAI47_16250	0.88	+1.4
3,441,942	-		IAI47_16250	0.89	-2.0
3,441,942	-		IAI47_16250	0.89	+0.3
3,441,989	+				-2.4
3,441,990	-				+0.8
3,441,998	+				-1.3
3,441,998	+				-0.5
3,441,999	-				-0.5
3,442,064	-		IAI47_16255	0.20	-1.6
3,442,066	+		IAI47_16255	0.20	-1.1
3,442,066	+		IAI47_16255	0.20	-1.3
3,442,066	+		IAI47_16255	0.20	+2.6
3,442,067	-		IAI47_16255	0.21	+2.7
3,442,067	-		IAI47_16255	0.21	-1.1
3,442,067	-		IAI47_16255	0.21	-1.5
3,442,067	-		IAI47_16255	0.21	+0.7
3,442,142	+		IAI47_16255	0.44	-2.2
3,442,142	+		IAI47_16255	0.44	+1.3
3,442,142	+		IAI47_16255	0.44	-2.6
3,442,142	+		IAI47_16255	0.44	-2.2
3,442,143	-		IAI47_16255	0.44	-0.6
3,442,143	-		IAI47_16255	0.44	-2.7
3,442,143	-		IAI47_16255	0.44	+0.2
3,442,143	-		IAI47_16255	0.44	-3.5
3,442,143	-		IAI47_16255	0.44	-1.7
3,442,154	-		IAI47_16255	0.48	-0.8
3,442,154	-		IAI47_16255	0.48	-1.7
3,442,273	+		IAI47_16255	0.85	+1.0
3,442,273	+		IAI47_16255	0.85	-0.1
3,442,273	+		IAI47_16255	0.85	-1.1
3,442,273	+		IAI47_16255	0.85	+2.3
3,442,274	-		IAI47_16255	0.85	-0.3
3,442,274	-		IAI47_16255	0.85	+1.3