Strain Fitness in Pantoea sp. MT58 around IAI47_09060

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,912,708	-		IAI47_09055	0.83	-1.2
1,912,708	-		IAI47_09055	0.83	-1.7
1,912,708	-		IAI47_09055	0.83	-0.5
1,912,720	-		IAI47_09055	0.84	-2.4
1,912,787	-		IAI47_09055	0.86	-1.6
1,912,818	+		IAI47_09055	0.87	-1.4
1,912,819	-		IAI47_09055	0.87	-1.9
1,912,819	-		IAI47_09055	0.87	-1.2
1,912,819	-		IAI47_09055	0.87	-2.3
1,912,819	-		IAI47_09055	0.87	-0.2
1,912,819	-		IAI47_09055	0.87	-0.9
1,912,819	-		IAI47_09055	0.87	-1.7
1,912,881	+		IAI47_09055	0.90	-2.5
1,912,881	+		IAI47_09055	0.90	-3.2
1,912,881	+		IAI47_09055	0.90	+0.8
1,912,882	-		IAI47_09055	0.90	-2.6
1,912,895	-				-3.6
1,912,920	+				-2.4
1,912,920	+				-1.2
1,912,920	+				-1.6
1,912,921	-				-1.4
1,912,921	-				-2.8
1,912,922	+				-0.8
1,912,922	+				-1.4
1,912,931	+				-2.9
1,912,931	+				-3.4
1,912,931	+				-0.2
1,912,931	+				-1.6
1,912,932	-				+0.7
1,912,932	-				-3.1
1,912,932	-				-1.6
1,912,932	-				-1.6
1,912,935	+				-1.7
1,912,935	+				-0.9
1,912,935	+				-1.4
1,912,936	-				-2.2
1,912,936	-				-1.6
1,912,936	-				-3.7
1,912,936	-				+1.4
1,913,010	+				-1.6
1,913,010	+				-3.8
1,913,010	+				+0.2
1,913,010	+				-4.9
1,913,011	-				-1.2
1,913,011	-				-0.2
1,913,011	-				-3.0
1,913,060	-				+0.4
1,913,182	-				-1.9
1,913,221	+				-1.3
1,913,281	+				-2.2
1,913,344	-				-0.6
1,913,361	-				+1.4
1,913,361	-				-2.7
1,913,386	+				+2.6
1,913,427	-				-0.3
1,913,475	+				+0.2
1,913,476	-				+1.1
1,913,492	+				+1.2
1,913,504	+				-2.5
1,913,532	+				+4.7
1,913,533	-				+2.5
1,913,533	-				-2.8
1,913,533	-				+0.9
1,913,533	-				-2.2
1,913,535	-				+1.6
1,913,535	-				-0.6
1,913,536	+				-1.4
1,913,536	+				+0.4
1,913,536	+				+2.4
1,913,536	+				+0.7
1,913,536	+				+2.4
1,913,536	+				-2.0
1,913,536	+				-1.4
1,913,537	-				+1.8
1,913,537	-				-0.1
1,913,537	-				+0.4
1,913,537	-				-1.4
1,913,537	-				-0.2
1,913,537	-				+2.5
1,913,537	-				+4.4
1,913,537	-				+1.9
1,913,540	+				+0.8
1,913,540	+				-1.2
1,913,540	+				-0.2
1,913,540	+				+0.5
1,913,540	+				-1.4
1,913,541	-				-1.6
1,913,541	-				-1.1
1,913,541	-				+0.3
1,913,561	+				+1.1
1,913,579	+				-0.2
1,913,579	+				-0.3
1,913,579	+				-0.2
1,913,579	+				+1.9
1,913,580	-				-0.9
1,913,580	-				+2.2
1,913,580	-				-0.9
1,913,580	-				-1.9
1,913,580	-				+1.4
1,913,584	+				+1.4
1,913,584	+				+0.2
1,913,584	+				-0.2
1,913,584	+				+0.6
1,913,585	-				-0.7
1,913,585	-				+1.4
1,913,607	-				+2.7
1,913,615	-				+0.4
1,913,615	-				+1.4
1,913,615	-				+0.4
1,913,637	+				-1.7
1,913,637	+				-2.3
1,913,638	-				-2.6
1,913,638	-				-0.8
1,913,638	-				+2.2
1,913,643	+				-0.2
1,913,651	+				-1.1
1,913,652	-				-1.7
1,913,652	-				+1.4
1,913,653	+				-3.5
1,913,653	+				-1.4
1,913,654	-				+1.1
1,913,654	-				-1.1
1,913,701	+		IAI47_09060	0.12	+1.6
1,913,701	+		IAI47_09060	0.12	-1.6
1,913,702	-		IAI47_09060	0.12	+1.6
1,913,702	-		IAI47_09060	0.12	-1.8
1,913,702	-		IAI47_09060	0.12	-1.2
1,913,702	-		IAI47_09060	0.12	-0.1
1,913,702	-		IAI47_09060	0.12	+2.4
1,913,729	+		IAI47_09060	0.17	+1.7
1,913,752	+		IAI47_09060	0.20	-1.9
1,913,752	+		IAI47_09060	0.20	+0.8
1,913,753	-		IAI47_09060	0.20	+1.2
1,913,753	-		IAI47_09060	0.20	+0.2
1,913,758	+		IAI47_09060	0.21	+1.1
1,913,758	+		IAI47_09060	0.21	+3.5
1,913,758	+		IAI47_09060	0.21	-0.1
1,913,758	+		IAI47_09060	0.21	+2.3
1,913,759	-		IAI47_09060	0.21	-0.9
1,913,759	-		IAI47_09060	0.21	+2.0
1,913,759	-		IAI47_09060	0.21	+1.3
1,913,765	-		IAI47_09060	0.22	+0.4
1,913,770	+		IAI47_09060	0.23	-0.6
1,913,927	-		IAI47_09060	0.47	-1.6
1,914,019	+		IAI47_09060	0.61	-1.1
1,914,019	+		IAI47_09060	0.61	+0.4
1,914,019	+		IAI47_09060	0.61	+1.9
1,914,019	+		IAI47_09060	0.61	+3.7
1,914,020	-		IAI47_09060	0.62	+1.1
1,914,020	-		IAI47_09060	0.62	-2.7
1,914,050	+		IAI47_09060	0.66	+2.6
1,914,051	-		IAI47_09060	0.66	-1.4
1,914,080	-		IAI47_09060	0.71	-1.9
1,914,094	+		IAI47_09060	0.73	+1.9
1,914,095	-		IAI47_09060	0.73	+0.8
1,914,095	-		IAI47_09060	0.73	+1.2
1,914,095	-		IAI47_09060	0.73	-0.7
1,914,095	-		IAI47_09060	0.73	+1.3
1,914,095	-		IAI47_09060	0.73	+1.6
1,914,117	+		IAI47_09060	0.77	-0.6
1,914,117	+		IAI47_09060	0.77	-2.4
1,914,138	+		IAI47_09060	0.80	+0.8
1,914,139	-		IAI47_09060	0.80	+1.0
1,914,198	+		IAI47_09060	0.89	+0.5
1,914,198	+		IAI47_09060	0.89	+2.4
1,914,229	-				-0.6
1,914,245	-				+0.9
1,914,279	-				+1.7
1,914,300	+				+0.5
1,914,300	+				+1.4
1,914,301	-				+0.7
1,914,311	-				-1.7
1,914,311	-				-1.7
1,914,340	-				-0.9
1,914,342	+				-0.2
1,914,342	+				-2.3
1,914,342	+				+1.4
1,914,362	+				-0.9
1,914,366	+				+2.1
1,914,367	-				+0.3
1,914,371	+				+0.3
1,914,431	+				-2.7
1,914,440	-				-0.4
1,914,441	-				+0.3
1,914,453	+				+1.0
1,914,471	+				-0.2
1,914,472	-				-0.5
1,914,498	-				-0.3
1,914,501	-				+0.4
1,914,501	-				-0.3
1,914,505	+				-0.2
1,914,538	+				+1.4
1,914,538	+				+0.2
1,914,539	-				+0.8
1,914,545	-				-1.7
1,914,545	-				+0.6
1,914,682	-				-0.9
1,914,692	+				-0.9
1,914,692	+				+0.6
1,914,692	+				-0.8
1,914,693	-				+0.0
1,914,697	-				+1.7
1,914,741	+				-1.2
1,914,802	-				+0.1
1,914,802	-				-1.7
1,914,816	-				-1.7
1,914,819	+				+0.4
1,914,819	+				-0.7
1,914,819	+				+0.5
1,914,819	+				-0.8
1,914,819	+				+1.9
1,914,820	-				-2.0
1,914,820	-				-1.9
1,914,823	+				-1.9
1,914,823	+				-1.6
1,914,824	-				-1.7
1,914,915	+				+0.2
1,914,915	+				-1.9
1,914,915	+				+1.0
1,914,971	+				-0.6
1,914,971	+				-0.3
1,914,971	+				-2.2
1,914,971	+				-2.1
1,914,971	+				+0.2
1,914,971	+				-2.2
1,914,972	-				-0.6
1,914,972	-				-0.7
1,914,972	-				-0.9
1,915,034	+		IAI47_09065	0.12	+1.7
1,915,034	+		IAI47_09065	0.12	+3.6
1,915,035	-		IAI47_09065	0.12	+0.9
1,915,067	+		IAI47_09065	0.14	+3.2
1,915,068	-		IAI47_09065	0.14	+1.0
1,915,127	+		IAI47_09065	0.18	-0.3
1,915,128	-		IAI47_09065	0.18	-0.1
1,915,128	-		IAI47_09065	0.18	-1.9
1,915,128	-		IAI47_09065	0.18	+1.7
1,915,246	-		IAI47_09065	0.25	+2.6
1,915,254	+		IAI47_09065	0.25	+2.4