Strain Fitness in Pantoea sp. MT58 around IAI47_06440

Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,311,265	+				+0.2
1,311,265	+				-0.0
1,311,265	+				-2.6
1,311,266	-				+1.9
1,311,266	-				+0.0
1,311,300	+				-0.4
1,311,300	+				-2.3
1,311,300	+				+1.0
1,311,301	-				+0.0
1,311,301	-				-0.8
1,311,301	-				-1.0
1,311,354	-				-0.5
1,311,374	+				+2.1
1,311,375	-				+0.6
1,311,375	-				+0.2
1,311,383	-				+0.6
1,311,383	-				+1.2
1,311,383	-				+0.2
1,311,388	+				+0.4
1,311,425	-				+0.1
1,311,425	-				+0.8
1,311,468	+				+0.8
1,311,468	+				-1.0
1,311,468	+				+1.2
1,311,468	+				+1.8
1,311,468	+				-1.0
1,311,468	+				+1.1
1,311,468	+				-1.2
1,311,469	-				+1.3
1,311,511	+				-2.2
1,311,517	+				-2.9
1,311,518	-				-0.8
1,311,572	+				+0.5
1,311,572	+				+1.1
1,311,572	+				-1.8
1,311,572	+				+1.6
1,311,572	+				+0.7
1,311,572	+				-2.5
1,311,573	-				+1.0
1,311,573	-				-0.0
1,311,578	+				-1.3
1,311,580	+				+1.3
1,311,580	+				+0.3
1,311,580	+				-0.6
1,311,580	+				+2.6
1,311,580	+				-1.9
1,311,580	+				-2.8
1,311,580	+				+0.7
1,311,580	+				+2.1
1,311,580	+				-0.7
1,311,580	+				-1.5
1,311,580	+				+3.3
1,311,580	+				-1.4
1,311,580	+				-0.8
1,311,580	+				+1.6
1,311,580	+				+0.7
1,311,581	-				-0.1
1,311,581	-				+1.1
1,311,581	-				+0.0
1,311,581	-				+0.6
1,311,581	-				-2.3
1,311,581	-				-1.5
1,311,581	-				+1.4
1,311,584	+				+1.5
1,311,584	+				-1.6
1,311,584	+				-3.1
1,311,585	-				-1.8
1,311,585	-				-0.3
1,311,585	-				+1.8
1,311,623	+				-1.5
1,311,623	+				-1.4
1,311,623	+				-0.2
1,311,623	+				+2.2
1,311,623	+				-1.0
1,311,663	+		IAI47_06435	0.14	-0.4
1,311,663	+		IAI47_06435	0.14	+0.6
1,311,664	-		IAI47_06435	0.14	+0.8
1,311,671	+		IAI47_06435	0.17	+2.7
1,311,671	+		IAI47_06435	0.17	-2.0
1,311,671	+		IAI47_06435	0.17	-1.5
1,311,699	+		IAI47_06435	0.26	-0.7
1,311,699	+		IAI47_06435	0.26	-0.4
1,311,699	+		IAI47_06435	0.26	-0.2
1,311,730	+		IAI47_06435	0.36	+3.2
1,311,731	-		IAI47_06435	0.36	-1.2
1,311,731	-		IAI47_06435	0.36	+0.1
1,311,741	+		IAI47_06435	0.39	-1.2
1,311,741	+		IAI47_06435	0.39	-1.0
1,311,742	-		IAI47_06435	0.39	+1.3
1,311,774	+		IAI47_06435	0.50	+1.1
1,311,774	+		IAI47_06435	0.50	+0.5
1,311,774	+		IAI47_06435	0.50	-0.6
1,311,775	-		IAI47_06435	0.50	+0.3
1,311,775	-		IAI47_06435	0.50	+2.6
1,311,805	+		IAI47_06435	0.60	-0.8
1,311,805	+		IAI47_06435	0.60	-0.0
1,311,805	+		IAI47_06435	0.60	+1.6
1,311,805	+		IAI47_06435	0.60	+0.7
1,311,805	+		IAI47_06435	0.60	-1.6
1,311,806	-		IAI47_06435	0.60	+0.9
1,311,806	-		IAI47_06435	0.60	-0.8
1,311,806	-		IAI47_06435	0.60	-0.5
1,311,806	-		IAI47_06435	0.60	+0.9
1,311,806	-		IAI47_06435	0.60	-1.0
1,311,806	-		IAI47_06435	0.60	-0.4
1,311,806	-		IAI47_06435	0.60	-0.9
1,311,808	+		IAI47_06435	0.61	-1.1
1,311,808	+		IAI47_06435	0.61	-2.0
1,311,808	+		IAI47_06435	0.61	+3.8
1,311,808	+		IAI47_06435	0.61	+0.7
1,311,808	+		IAI47_06435	0.61	-0.9
1,311,808	+		IAI47_06435	0.61	+0.4
1,311,809	-		IAI47_06435	0.61	+0.4
1,311,809	-		IAI47_06435	0.61	+1.2
1,311,809	-		IAI47_06435	0.61	+2.4
1,311,809	-		IAI47_06435	0.61	-1.0
1,311,809	-		IAI47_06435	0.61	-1.4
1,311,809	-		IAI47_06435	0.61	+1.4
1,311,809	-		IAI47_06435	0.61	-1.9
1,311,809	-		IAI47_06435	0.61	-1.6
1,311,811	+		IAI47_06435	0.62	+1.2
1,311,811	+		IAI47_06435	0.62	+2.2
1,311,811	+		IAI47_06435	0.62	+3.1
1,311,832	+		IAI47_06435	0.68	-2.4
1,311,832	+		IAI47_06435	0.68	-0.4
1,311,847	+		IAI47_06435	0.73	+1.3
1,311,847	+		IAI47_06435	0.73	-2.5
1,311,847	+		IAI47_06435	0.73	-0.3
1,311,847	+		IAI47_06435	0.73	+1.0
1,311,848	-		IAI47_06435	0.73	-2.7
1,311,875	+		IAI47_06435	0.82	-0.9
1,311,876	-		IAI47_06435	0.82	-1.1
1,311,879	+		IAI47_06435	0.83	+0.7
1,311,879	+		IAI47_06435	0.83	+0.1
1,311,880	-		IAI47_06435	0.84	-1.4
1,311,880	-		IAI47_06435	0.84	+0.8
1,311,880	-		IAI47_06435	0.84	+1.3
1,311,947	+				+1.6
1,311,947	+				+1.2
1,311,948	-				-0.4
1,311,971	+				+0.9
1,311,972	-				+1.1
1,311,972	-				+0.4
1,312,067	+				+0.3
1,312,068	-				+1.1
1,312,087	-				-2.1
1,312,087	-				+2.2
1,312,087	-				+0.6
1,312,087	-				+1.6
1,312,087	-				+1.8
1,312,090	+				+0.7
1,312,091	-				-1.8
1,312,098	+				-0.1
1,312,143	+				-0.0
1,312,143	+				-0.4
1,312,143	+				+1.9
1,312,143	+				+0.1
1,312,144	-				+0.9
1,312,144	-				+2.0
1,312,144	-				-1.2
1,312,144	-				+1.3
1,312,144	-				-2.2
1,312,149	+				+0.8
1,312,150	-				-1.0
1,312,153	+				-0.8
1,312,153	+				+2.6
1,312,154	-				+6.6
1,312,154	-				+1.6
1,312,182	+				-0.4
1,312,182	+				-1.9
1,312,182	+				-2.3
1,312,183	-				+1.4
1,312,200	+				+1.1
1,312,261	-				-0.2
1,312,261	-				+0.7
1,312,564	-		IAI47_06440	0.32	-1.2
1,312,617	-		IAI47_06440	0.37	-2.4
1,312,647	+		IAI47_06440	0.39	+0.8
1,312,647	+		IAI47_06440	0.39	+1.6
1,312,647	+		IAI47_06440	0.39	-1.2
1,312,755	+		IAI47_06440	0.48	-2.6
1,312,807	+		IAI47_06440	0.53	-0.8
1,312,807	+		IAI47_06440	0.53	+0.1
1,312,901	+		IAI47_06440	0.60	+1.3
1,312,901	+		IAI47_06440	0.60	+0.6
1,312,902	-		IAI47_06440	0.61	-2.4
1,312,917	+		IAI47_06440	0.62	+2.8
1,312,917	+		IAI47_06440	0.62	+0.3
1,312,917	+		IAI47_06440	0.62	-0.5
1,312,917	+		IAI47_06440	0.62	+0.0
1,312,917	+		IAI47_06440	0.62	-2.1
1,312,918	-		IAI47_06440	0.62	+0.6
1,312,918	-		IAI47_06440	0.62	+0.4
1,312,918	-		IAI47_06440	0.62	+0.9
1,312,918	-		IAI47_06440	0.62	+0.8
1,313,002	+		IAI47_06440	0.69	-3.0
1,313,002	+		IAI47_06440	0.69	-0.0
1,313,002	+		IAI47_06440	0.69	+1.5
1,313,002	+		IAI47_06440	0.69	+1.6
1,313,003	-		IAI47_06440	0.69	-2.2
1,313,003	-		IAI47_06440	0.69	+0.3
1,313,003	-		IAI47_06440	0.69	-0.9
1,313,003	-		IAI47_06440	0.69	-1.3
1,313,020	+		IAI47_06440	0.70	+0.8
1,313,192	+		IAI47_06440	0.85	+1.0
1,313,192	+		IAI47_06440	0.85	+1.4
1,313,192	+		IAI47_06440	0.85	-0.9
1,313,192	+		IAI47_06440	0.85	-0.3
1,313,192	+		IAI47_06440	0.85	+0.4
1,313,192	+		IAI47_06440	0.85	-1.2
1,313,192	+		IAI47_06440	0.85	+0.9
1,313,192	+		IAI47_06440	0.85	+0.4
1,313,192	+		IAI47_06440	0.85	-1.4
1,313,192	+		IAI47_06440	0.85	-2.7
1,313,192	+		IAI47_06440	0.85	-1.4
1,313,193	-		IAI47_06440	0.85	-1.7
1,313,193	-		IAI47_06440	0.85	+2.3
1,313,193	-		IAI47_06440	0.85	-0.1
1,313,193	-		IAI47_06440	0.85	-3.4
1,313,193	-		IAI47_06440	0.85	+0.6
1,313,193	-		IAI47_06440	0.85	-1.9
1,313,196	+		IAI47_06440	0.85	+0.7
1,313,196	+		IAI47_06440	0.85	-0.0
1,313,196	+		IAI47_06440	0.85	+4.1
1,313,196	+		IAI47_06440	0.85	-1.6
1,313,197	-		IAI47_06440	0.85	-1.4
1,313,197	-		IAI47_06440	0.85	+0.1
1,313,247	+		IAI47_06440	0.89	+0.3
1,313,248	-		IAI47_06440	0.89	-1.7
1,313,248	-		IAI47_06440	0.89	-1.4
1,313,292	+				-4.2
1,313,292	+				-1.8
1,313,292	+				+0.9
1,313,293	-				-0.9
1,313,293	-				+0.8
1,313,293	-				-3.0
1,313,293	-				-0.0
1,313,293	-				+0.6
1,313,293	-				+1.6
1,313,293	-				-1.8
1,313,310	-				-0.0
1,313,310	-				+2.4
1,313,356	-				+1.2
1,313,415	+				+2.2
1,313,415	+				-2.7
1,313,415	+				+1.4
1,313,415	+				-0.8
1,313,416	-				-0.2
1,313,416	-				+0.6
1,313,416	-				-0.7
1,313,416	-				+1.8
1,313,459	+				-2.6
1,313,459	+				+0.6
1,313,459	+				+0.1
1,313,460	-				-2.4
1,313,460	-				+0.3
1,313,460	-				+0.5
1,313,460	-				+2.6
1,313,460	-				-0.5
1,313,463	+				-2.6
1,313,463	+				-2.3
1,313,463	+				-0.0
1,313,463	+				+0.6
1,313,464	-				-0.6
1,313,464	-				+0.2
1,313,464	-				+2.7
1,313,464	-				-1.6
1,313,479	-				+0.6
1,313,479	-				+0.9
1,313,514	+				-2.4
1,313,514	+				-2.8
1,313,514	+				+0.4
1,313,515	-				-2.6
1,313,515	-				-0.1
1,313,515	-				-0.8
1,313,515	-				+0.8
1,313,516	+				-3.0
1,313,516	+				-0.7
1,313,516	+				+0.7
1,313,516	+				+2.0
1,313,517	-				-3.9
1,313,517	-				+0.2
1,313,517	-				-0.4
1,313,517	-				+0.6
1,313,517	-				+1.4
1,313,539	+		IAI47_06445	0.10	-1.6
1,313,601	+		IAI47_06445	0.34	-0.3
1,313,601	+		IAI47_06445	0.34	-0.8
1,313,680	+		IAI47_06445	0.64	+0.5
1,313,680	+		IAI47_06445	0.64	-1.4
1,313,681	-		IAI47_06445	0.64	-1.2
1,313,681	-		IAI47_06445	0.64	-1.5
1,313,681	-		IAI47_06445	0.64	-3.1
1,313,681	-		IAI47_06445	0.64	-3.5
1,313,681	-		IAI47_06445	0.64	-1.6
1,313,755	+				+2.0
1,313,755	+				+1.6
1,313,756	-				-1.0
1,313,756	-				+0.4
1,313,756	-				-2.6
1,313,777	+				-0.2
1,313,778	-				+0.9
1,313,778	-				-1.4
1,313,958	+		IAI47_06450	0.16	+0.3
1,313,976	-		IAI47_06450	0.18	-1.0
1,314,039	-		IAI47_06450	0.23	-1.0
1,314,039	-		IAI47_06450	0.23	+3.1
1,314,163	-		IAI47_06450	0.34	-0.0
1,314,163	-		IAI47_06450	0.34	-0.8
1,314,279	-		IAI47_06450	0.44	+1.3
1,314,322	-		IAI47_06450	0.48	+0.6
1,314,323	+		IAI47_06450	0.48	-2.4
1,314,323	+		IAI47_06450	0.48	-0.0
1,314,323	+		IAI47_06450	0.48	-0.7
1,314,324	-		IAI47_06450	0.48	-1.2
1,314,324	-		IAI47_06450	0.48	-2.7
1,314,324	-		IAI47_06450	0.48	-0.4