Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03650 and IAI47_03655 are separated by 534 nucleotides IAI47_03655 and IAI47_03660 are separated by 840 nucleotides
IAI47_03650: IAI47_03650 - sugar porter family MFS transporter, at 758,200 to 759,597
_03650
IAI47_03655: IAI47_03655 - methionine adenosyltransferase, at 760,132 to 761,283
_03655
IAI47_03660: IAI47_03660 - biosynthetic arginine decarboxylase, at 762,124 to 764,100
_03660
Position (kb) 760
761
762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 759.136 kb on - strand, within IAI47_03650 at 759.141 kb on + strand, within IAI47_03650 at 759.141 kb on + strand, within IAI47_03650 at 759.142 kb on - strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.144 kb on + strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.145 kb on - strand, within IAI47_03650 at 759.210 kb on - strand, within IAI47_03650 at 759.223 kb on - strand, within IAI47_03650 at 759.223 kb on - strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.224 kb on + strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.225 kb on - strand, within IAI47_03650 at 759.352 kb on - strand, within IAI47_03650 at 759.388 kb on - strand, within IAI47_03650 at 759.453 kb on + strand, within IAI47_03650 at 759.454 kb on - strand, within IAI47_03650 at 759.454 kb on - strand, within IAI47_03650 at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.547 kb on + strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.548 kb on - strand at 759.561 kb on + strand at 759.585 kb on + strand at 759.585 kb on + strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.586 kb on - strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.600 kb on + strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.601 kb on - strand at 759.614 kb on - strand at 759.614 kb on - strand at 759.614 kb on - strand at 759.621 kb on + strand at 759.629 kb on + strand at 759.720 kb on + strand at 759.721 kb on - strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.742 kb on + strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.743 kb on - strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.754 kb on + strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.755 kb on - strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.756 kb on + strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.757 kb on - strand at 759.767 kb on - strand at 759.796 kb on + strand at 759.832 kb on - strand at 759.835 kb on - strand at 759.838 kb on + strand at 759.838 kb on + strand at 759.855 kb on - strand at 759.866 kb on - strand at 759.868 kb on - strand at 759.928 kb on + strand at 759.929 kb on - strand at 759.929 kb on - strand at 759.957 kb on + strand at 760.007 kb on + strand at 760.007 kb on + strand at 760.008 kb on - strand at 760.020 kb on + strand at 760.025 kb on + strand at 760.025 kb on + strand at 760.026 kb on - strand at 760.026 kb on - strand at 760.026 kb on - strand at 760.084 kb on + strand at 760.133 kb on + strand at 760.133 kb on + strand at 760.133 kb on + strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 760.134 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.383 kb on - strand at 761.386 kb on - strand at 761.386 kb on - strand at 761.386 kb on - strand at 761.416 kb on - strand at 761.416 kb on - strand at 761.419 kb on - strand at 761.419 kb on - strand at 761.428 kb on - strand at 761.478 kb on - strand at 761.478 kb on - strand at 761.526 kb on + strand at 761.526 kb on + strand at 761.527 kb on - strand at 761.573 kb on + strand at 761.582 kb on - strand at 761.589 kb on - strand at 761.590 kb on + strand at 761.590 kb on + strand at 761.591 kb on - strand at 761.591 kb on - strand at 761.610 kb on - strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.701 kb on + strand at 761.702 kb on - strand at 761.702 kb on - strand at 761.702 kb on - strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.714 kb on + strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.715 kb on - strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.720 kb on + strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.721 kb on - strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.815 kb on + strand at 761.816 kb on - strand at 761.816 kb on - strand at 761.816 kb on - strand at 761.816 kb on - strand at 761.861 kb on + strand at 761.861 kb on + strand at 761.862 kb on - strand at 761.921 kb on - strand at 761.921 kb on - strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.933 kb on + strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.934 kb on - strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.937 kb on + strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.938 kb on - strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.941 kb on + strand at 761.942 kb on - strand at 761.942 kb on - strand at 761.942 kb on - strand at 761.942 kb on - strand at 761.950 kb on + strand at 761.980 kb on + strand at 761.980 kb on + strand at 761.981 kb on - strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.986 kb on + strand at 761.987 kb on - strand at 761.987 kb on - strand at 761.987 kb on - strand at 761.987 kb on - strand at 762.043 kb on + strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.044 kb on - strand at 762.067 kb on + strand at 762.076 kb on + strand at 762.077 kb on - strand at 762.095 kb on + strand at 762.096 kb on - strand at 762.096 kb on - strand at 762.144 kb on + strand at 762.144 kb on + strand at 762.144 kb on + strand at 762.145 kb on - strand at 762.145 kb on - strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.234 kb on + strand at 762.235 kb on - strand at 762.235 kb on - strand at 762.235 kb on - strand at 762.238 kb on + strand at 762.238 kb on + strand at 762.238 kb on + strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.239 kb on - strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.265 kb on + strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.266 kb on - strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.268 kb on + strand at 762.269 kb on - strand at 762.269 kb on - strand at 762.269 kb on - strand at 762.269 kb on - strand at 762.269 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 759,136 - IAI47_03650 0.67 +0.9 759,141 + IAI47_03650 0.67 +3.6 759,141 + IAI47_03650 0.67 +1.9 759,142 - IAI47_03650 0.67 -1.5 759,144 + IAI47_03650 0.68 -0.6 759,144 + IAI47_03650 0.68 -1.3 759,144 + IAI47_03650 0.68 +1.5 759,144 + IAI47_03650 0.68 +0.4 759,144 + IAI47_03650 0.68 +0.7 759,144 + IAI47_03650 0.68 -2.0 759,144 + IAI47_03650 0.68 -1.8 759,144 + IAI47_03650 0.68 -1.3 759,144 + IAI47_03650 0.68 -2.2 759,144 + IAI47_03650 0.68 -1.9 759,144 + IAI47_03650 0.68 -2.2 759,145 - IAI47_03650 0.68 -0.7 759,145 - IAI47_03650 0.68 -0.5 759,145 - IAI47_03650 0.68 +0.1 759,145 - IAI47_03650 0.68 +0.0 759,210 - IAI47_03650 0.72 -1.3 759,223 - IAI47_03650 0.73 +0.7 759,223 - IAI47_03650 0.73 -0.6 759,224 + IAI47_03650 0.73 -2.8 759,224 + IAI47_03650 0.73 +0.4 759,224 + IAI47_03650 0.73 +0.7 759,225 - IAI47_03650 0.73 -0.9 759,225 - IAI47_03650 0.73 +5.3 759,225 - IAI47_03650 0.73 -0.0 759,225 - IAI47_03650 0.73 +0.6 759,225 - IAI47_03650 0.73 -0.8 759,225 - IAI47_03650 0.73 -0.5 759,225 - IAI47_03650 0.73 +1.2 759,225 - IAI47_03650 0.73 -1.2 759,225 - IAI47_03650 0.73 -2.6 759,225 - IAI47_03650 0.73 -1.6 759,225 - IAI47_03650 0.73 -0.3 759,225 - IAI47_03650 0.73 -2.6 759,352 - IAI47_03650 0.82 +2.5 759,388 - IAI47_03650 0.85 -0.1 759,453 + IAI47_03650 0.90 +0.6 759,454 - IAI47_03650 0.90 -1.8 759,454 - IAI47_03650 0.90 -0.4 759,547 + -1.0 759,547 + -0.2 759,547 + -0.4 759,547 + +0.7 759,547 + -0.5 759,547 + -1.0 759,547 + -3.8 759,547 + -1.5 759,547 + +0.9 759,548 - +0.2 759,548 - +1.3 759,548 - -4.1 759,548 - +0.4 759,548 - -0.9 759,548 - -2.9 759,548 - +0.4 759,548 - +0.7 759,548 - -0.5 759,548 - +1.7 759,561 + -2.6 759,585 + +0.2 759,585 + -1.4 759,586 - -0.3 759,586 - +1.7 759,586 - -0.9 759,586 - +2.0 759,600 + -1.8 759,600 + +3.5 759,600 + -0.4 759,600 + -1.1 759,601 - -0.6 759,601 - +0.7 759,601 - -1.3 759,601 - -0.6 759,614 - -0.6 759,614 - -0.0 759,614 - +0.6 759,621 + -1.0 759,629 + -0.2 759,720 + -1.1 759,721 - +2.1 759,742 + +0.3 759,742 + +2.3 759,742 + +0.4 759,742 + -1.9 759,742 + +0.5 759,742 + +0.3 759,743 - +1.7 759,743 - +0.7 759,743 - +0.7 759,743 - +1.1 759,754 + -1.5 759,754 + +0.6 759,754 + -1.7 759,754 + -2.5 759,754 + +0.1 759,754 + -0.2 759,754 + +0.7 759,755 - -2.9 759,755 - -0.1 759,755 - -1.6 759,755 - +1.1 759,755 - +2.1 759,755 - -0.1 759,755 - +1.1 759,755 - -0.2 759,755 - +0.6 759,755 - -2.4 759,756 + +0.5 759,756 + -1.5 759,756 + -1.2 759,756 + -0.5 759,756 + -0.1 759,757 - +0.8 759,757 - +1.6 759,757 - +2.6 759,757 - +0.7 759,767 - -2.3 759,796 + +0.9 759,832 - -3.2 759,835 - -1.9 759,838 + +0.8 759,838 + +0.8 759,855 - +0.9 759,866 - -2.6 759,868 - -0.1 759,928 + -0.6 759,929 - +1.1 759,929 - +0.9 759,957 + +0.5 760,007 + +1.2 760,007 + -0.6 760,008 - -0.8 760,020 + +2.8 760,025 + -3.3 760,025 + +0.5 760,026 - -0.6 760,026 - +1.3 760,026 - -2.3 760,084 + +2.2 760,133 + +1.8 760,133 + +0.6 760,133 + -1.9 760,134 - -0.5 760,134 - +0.8 760,134 - -1.1 760,134 - -0.2 760,134 - -0.8 761,383 - +0.7 761,383 - -3.0 761,383 - -0.3 761,383 - -2.6 761,383 - +0.1 761,386 - -1.3 761,386 - -2.6 761,386 - -1.9 761,416 - +3.3 761,416 - +2.9 761,419 - +0.5 761,419 - +1.7 761,428 - +0.3 761,478 - -1.5 761,478 - +2.7 761,526 + -2.2 761,526 + +0.0 761,527 - +2.1 761,573 + -4.1 761,582 - +2.2 761,589 - -1.9 761,590 + -2.2 761,590 + -2.2 761,591 - +0.7 761,591 - -1.8 761,610 - +1.7 761,701 + +2.1 761,701 + -0.4 761,701 + +1.3 761,701 + +2.0 761,701 + +2.0 761,702 - -1.1 761,702 - +0.6 761,702 - +0.9 761,714 + +0.3 761,714 + +0.2 761,714 + -3.2 761,714 + +1.1 761,715 - -1.1 761,715 - -0.0 761,715 - +0.6 761,715 - +1.5 761,715 - +2.2 761,715 - -2.8 761,715 - +1.4 761,715 - +0.5 761,715 - +1.7 761,720 + +0.6 761,720 + -1.9 761,720 + -0.4 761,720 + -1.9 761,720 + -0.6 761,721 - -0.9 761,721 - -1.2 761,721 - +0.7 761,721 - -3.6 761,721 - +0.6 761,721 - +1.1 761,721 - -1.1 761,815 + +0.7 761,815 + -1.4 761,815 + -0.7 761,815 + +1.3 761,815 + +1.5 761,815 + -0.8 761,815 + -2.9 761,815 + +1.2 761,815 + -1.9 761,816 - +0.9 761,816 - -0.9 761,816 - +0.3 761,816 - -0.2 761,861 + -3.2 761,861 + +1.3 761,862 - -1.8 761,921 - -0.6 761,921 - -0.2 761,933 + +0.5 761,933 + -0.0 761,933 + +1.6 761,933 + -0.2 761,933 + -1.3 761,933 + +1.1 761,933 + -1.3 761,933 + -0.8 761,933 + -1.6 761,934 - -0.1 761,934 - -1.9 761,934 - -1.9 761,934 - +1.7 761,934 - +0.0 761,934 - +0.8 761,934 - +0.3 761,934 - -0.3 761,934 - -0.5 761,937 + +1.5 761,937 + +2.1 761,937 + +1.3 761,937 + +1.6 761,937 + +1.3 761,938 - -0.5 761,938 - +2.7 761,938 - -0.4 761,938 - +1.5 761,938 - +2.2 761,938 - -0.5 761,938 - -2.3 761,941 + +0.6 761,941 + -0.6 761,941 + -0.2 761,941 + -1.8 761,941 + -2.6 761,941 + +1.2 761,941 + -0.5 761,942 - +3.1 761,942 - -2.4 761,942 - -2.8 761,942 - -2.8 761,950 + +0.9 761,980 + -0.4 761,980 + +3.8 761,981 - +2.2 761,986 + -3.2 761,986 + -2.9 761,986 + +1.1 761,986 + +0.2 761,986 + -1.3 761,986 + +2.1 761,986 + -0.2 761,986 + -1.0 761,986 + -3.1 761,987 - -0.7 761,987 - +1.2 761,987 - -0.8 761,987 - -1.6 762,043 + -0.6 762,044 - -0.4 762,044 - -2.3 762,044 - -0.3 762,044 - -0.2 762,044 - +0.1 762,067 + +0.6 762,076 + -0.8 762,077 - -0.9 762,095 + -1.2 762,096 - -1.1 762,096 - -2.9 762,144 + -0.3 762,144 + +0.6 762,144 + -0.1 762,145 - -0.1 762,145 - +2.2 762,234 + +1.7 762,234 + +1.7 762,234 + -2.7 762,234 + +0.0 762,234 + -1.5 762,234 + -0.5 762,234 + -1.6 762,235 - -2.3 762,235 - +2.5 762,235 - -0.2 762,238 + -0.5 762,238 + -1.1 762,238 + +1.7 762,239 - +0.5 762,239 - +1.3 762,239 - +0.8 762,239 - +0.7 762,239 - -3.7 762,239 - +0.9 762,265 + -0.1 762,265 + -0.2 762,265 + -0.8 762,265 + +0.8 762,265 + +0.2 762,265 + +0.5 762,265 + +0.8 762,265 + -0.6 762,265 + +3.0 762,265 + +0.2 762,265 + -2.9 762,265 + -2.9 762,265 + +1.3 762,265 + -4.3 762,265 + +1.8 762,266 - +2.2 762,266 - +3.0 762,266 - +0.2 762,266 - +2.1 762,266 - +1.5 762,266 - -0.7 762,266 - -0.6 762,266 - -1.1 762,266 - -1.6 762,266 - -0.3 762,266 - -1.4 762,266 - -0.4 762,266 - -0.5 762,266 - +2.8 762,266 - +0.2 762,266 - -0.2 762,266 - -1.0 762,268 + -1.9 762,268 + +0.9 762,268 + -1.6 762,268 + -2.8 762,268 + -2.1 762,268 + -0.8 762,269 - +1.1 762,269 - -0.5 762,269 - -1.4 762,269 - -2.1 762,269 - -2.4
Or see this region's nucleotide sequence