Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03540 and IAI47_03545 are separated by 561 nucleotides IAI47_03545 and IAI47_03550 are separated by 971 nucleotides
IAI47_03540: IAI47_03540 - oxidoreductase, at 738,083 to 739,066
_03540
IAI47_03545: IAI47_03545 - ornithine decarboxylase, at 739,628 to 741,781
_03545
IAI47_03550: IAI47_03550 - membrane-bound lytic murein transglycosylase MltC, at 742,753 to 743,832
_03550
Position (kb) 739
740
741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 738.857 kb on + strand, within IAI47_03540 at 738.857 kb on + strand, within IAI47_03540 at 738.878 kb on - strand, within IAI47_03540 at 738.905 kb on + strand, within IAI47_03540 at 738.925 kb on + strand, within IAI47_03540 at 738.926 kb on - strand, within IAI47_03540 at 738.926 kb on - strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.942 kb on + strand, within IAI47_03540 at 738.943 kb on - strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.957 kb on + strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 738.958 kb on - strand, within IAI47_03540 at 739.026 kb on + strand at 739.102 kb on + strand at 739.103 kb on - strand at 739.117 kb on + strand at 739.118 kb on - strand at 739.118 kb on - strand at 739.191 kb on + strand at 739.191 kb on + strand at 739.191 kb on + strand at 739.191 kb on + strand at 739.192 kb on - strand at 739.192 kb on - strand at 739.192 kb on - strand at 739.215 kb on + strand at 739.256 kb on - strand at 739.331 kb on - strand at 739.348 kb on - strand at 739.348 kb on - strand at 739.427 kb on - strand at 739.482 kb on - strand at 739.542 kb on + strand at 739.542 kb on + strand at 739.543 kb on - strand at 739.557 kb on - strand at 739.559 kb on + strand at 739.559 kb on + strand at 739.560 kb on - strand at 739.560 kb on - strand at 739.616 kb on - strand at 739.628 kb on - strand at 739.628 kb on - strand at 739.628 kb on - strand at 739.698 kb on + strand at 739.698 kb on + strand at 739.699 kb on - strand at 739.699 kb on - strand at 739.699 kb on - strand at 739.723 kb on + strand at 739.724 kb on - strand at 739.792 kb on + strand at 739.801 kb on + strand at 739.801 kb on + strand at 739.922 kb on + strand, within IAI47_03545 at 739.922 kb on + strand, within IAI47_03545 at 739.923 kb on - strand, within IAI47_03545 at 739.923 kb on - strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.935 kb on + strand, within IAI47_03545 at 739.936 kb on - strand, within IAI47_03545 at 739.936 kb on - strand, within IAI47_03545 at 739.967 kb on + strand, within IAI47_03545 at 739.967 kb on + strand, within IAI47_03545 at 739.968 kb on - strand, within IAI47_03545 at 739.968 kb on - strand, within IAI47_03545 at 739.968 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.027 kb on - strand, within IAI47_03545 at 740.054 kb on + strand, within IAI47_03545 at 740.054 kb on + strand, within IAI47_03545 at 740.055 kb on - strand, within IAI47_03545 at 740.064 kb on - strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.089 kb on + strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.090 kb on - strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.159 kb on + strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.160 kb on - strand, within IAI47_03545 at 740.192 kb on + strand, within IAI47_03545 at 740.193 kb on - strand, within IAI47_03545 at 740.204 kb on - strand, within IAI47_03545 at 740.221 kb on + strand, within IAI47_03545 at 740.221 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.224 kb on + strand, within IAI47_03545 at 740.225 kb on - strand, within IAI47_03545 at 740.229 kb on + strand, within IAI47_03545 at 740.229 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.293 kb on + strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.294 kb on - strand, within IAI47_03545 at 740.337 kb on - strand, within IAI47_03545 at 740.353 kb on + strand, within IAI47_03545 at 740.353 kb on + strand, within IAI47_03545 at 740.354 kb on - strand, within IAI47_03545 at 740.354 kb on - strand, within IAI47_03545 at 740.354 kb on - strand, within IAI47_03545 at 740.368 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.405 kb on + strand, within IAI47_03545 at 740.406 kb on - strand, within IAI47_03545 at 740.406 kb on - strand, within IAI47_03545 at 740.492 kb on + strand, within IAI47_03545 at 740.492 kb on + strand, within IAI47_03545 at 740.492 kb on + strand, within IAI47_03545 at 740.493 kb on - strand, within IAI47_03545 at 740.493 kb on - strand, within IAI47_03545 at 740.500 kb on + strand, within IAI47_03545 at 740.500 kb on + strand, within IAI47_03545 at 740.507 kb on + strand, within IAI47_03545 at 740.507 kb on + strand, within IAI47_03545 at 740.507 kb on + strand, within IAI47_03545 at 740.508 kb on - strand, within IAI47_03545 at 740.508 kb on - strand, within IAI47_03545 at 740.508 kb on - strand, within IAI47_03545 at 740.552 kb on + strand, within IAI47_03545 at 740.552 kb on + strand, within IAI47_03545 at 740.552 kb on + strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.553 kb on - strand, within IAI47_03545 at 740.583 kb on - strand, within IAI47_03545 at 740.677 kb on + strand, within IAI47_03545 at 740.677 kb on + strand, within IAI47_03545 at 740.677 kb on + strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.678 kb on - strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.725 kb on + strand, within IAI47_03545 at 740.726 kb on - strand, within IAI47_03545 at 740.726 kb on - strand, within IAI47_03545 at 740.726 kb on - strand, within IAI47_03545 at 740.773 kb on + strand, within IAI47_03545 at 740.782 kb on + strand, within IAI47_03545 at 740.782 kb on + strand, within IAI47_03545 at 740.782 kb on + strand, within IAI47_03545 at 740.783 kb on - strand, within IAI47_03545 at 740.783 kb on - strand, within IAI47_03545 at 740.810 kb on + strand, within IAI47_03545 at 740.810 kb on + strand, within IAI47_03545 at 740.811 kb on - strand, within IAI47_03545 at 740.811 kb on - strand, within IAI47_03545 at 740.911 kb on + strand, within IAI47_03545 at 740.912 kb on - strand, within IAI47_03545 at 740.964 kb on + strand, within IAI47_03545 at 740.992 kb on + strand, within IAI47_03545 at 740.992 kb on + strand, within IAI47_03545 at 741.020 kb on + strand, within IAI47_03545 at 741.021 kb on - strand, within IAI47_03545 at 741.081 kb on - strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.102 kb on + strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.103 kb on - strand, within IAI47_03545 at 741.109 kb on - strand, within IAI47_03545 at 741.143 kb on + strand, within IAI47_03545 at 741.143 kb on + strand, within IAI47_03545 at 741.143 kb on + strand, within IAI47_03545 at 741.144 kb on - strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.171 kb on + strand, within IAI47_03545 at 741.182 kb on + strand, within IAI47_03545 at 741.182 kb on + strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.183 kb on - strand, within IAI47_03545 at 741.313 kb on - strand, within IAI47_03545 at 741.353 kb on + strand, within IAI47_03545 at 741.374 kb on + strand, within IAI47_03545 at 741.374 kb on + strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.375 kb on - strand, within IAI47_03545 at 741.383 kb on + strand, within IAI47_03545 at 741.383 kb on + strand, within IAI47_03545 at 741.384 kb on - strand, within IAI47_03545 at 741.384 kb on - strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.385 kb on + strand, within IAI47_03545 at 741.422 kb on + strand, within IAI47_03545 at 741.423 kb on - strand, within IAI47_03545 at 741.423 kb on - strand, within IAI47_03545 at 741.423 kb on - strand, within IAI47_03545 at 741.439 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.518 kb on + strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.519 kb on - strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.520 kb on + strand, within IAI47_03545 at 741.521 kb on - strand, within IAI47_03545 at 741.521 kb on - strand, within IAI47_03545 at 741.521 kb on - strand, within IAI47_03545 at 741.594 kb on - strand at 741.654 kb on - strand at 741.654 kb on - strand at 741.654 kb on - strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.679 kb on + strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.680 kb on - strand at 741.684 kb on + strand at 741.720 kb on - strand at 741.720 kb on - strand at 741.720 kb on - strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.749 kb on + strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.750 kb on - strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.768 kb on + strand at 741.769 kb on - strand at 741.769 kb on - strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.923 kb on - strand at 741.923 kb on - strand at 741.994 kb on - strand at 742.003 kb on - strand at 742.003 kb on - strand at 742.015 kb on + strand at 742.015 kb on + strand at 742.190 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.309 kb on - strand at 742.605 kb on + strand at 742.605 kb on + strand at 742.605 kb on + strand at 742.606 kb on - strand at 742.708 kb on + strand at 742.709 kb on - strand at 742.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 738,857 + IAI47_03540 0.79 -1.7 738,857 + IAI47_03540 0.79 +0.3 738,878 - IAI47_03540 0.81 +3.4 738,905 + IAI47_03540 0.84 -1.6 738,925 + IAI47_03540 0.86 -0.6 738,926 - IAI47_03540 0.86 -0.0 738,926 - IAI47_03540 0.86 +0.5 738,942 + IAI47_03540 0.87 +2.2 738,942 + IAI47_03540 0.87 +0.2 738,942 + IAI47_03540 0.87 +0.2 738,942 + IAI47_03540 0.87 +1.7 738,942 + IAI47_03540 0.87 -2.8 738,942 + IAI47_03540 0.87 -2.0 738,942 + IAI47_03540 0.87 +7.0 738,943 - IAI47_03540 0.87 +0.4 738,957 + IAI47_03540 0.89 -0.6 738,957 + IAI47_03540 0.89 -2.3 738,957 + IAI47_03540 0.89 -0.1 738,957 + IAI47_03540 0.89 -1.5 738,957 + IAI47_03540 0.89 -1.6 738,957 + IAI47_03540 0.89 -1.1 738,958 - IAI47_03540 0.89 -0.7 738,958 - IAI47_03540 0.89 -1.5 738,958 - IAI47_03540 0.89 +2.9 738,958 - IAI47_03540 0.89 -0.0 738,958 - IAI47_03540 0.89 -2.1 738,958 - IAI47_03540 0.89 -0.2 738,958 - IAI47_03540 0.89 -2.5 739,026 + -3.5 739,102 + +0.3 739,103 - +1.4 739,117 + +1.1 739,118 - -1.6 739,118 - +4.1 739,191 + -0.2 739,191 + -2.5 739,191 + +1.2 739,191 + +3.7 739,192 - +1.7 739,192 - +3.2 739,192 - +1.2 739,215 + +0.8 739,256 - +0.9 739,331 - -0.9 739,348 - -0.6 739,348 - -0.6 739,427 - +1.1 739,482 - -2.2 739,542 + +1.1 739,542 + -0.7 739,543 - -4.2 739,557 - -0.6 739,559 + -0.3 739,559 + -1.6 739,560 - -0.6 739,560 - +2.2 739,616 - +3.2 739,628 - -0.6 739,628 - -1.3 739,628 - +2.4 739,698 + +0.7 739,698 + -0.8 739,699 - +2.3 739,699 - -0.5 739,699 - +0.3 739,723 + -2.0 739,724 - +1.6 739,792 + +0.3 739,801 + -0.3 739,801 + +1.4 739,922 + IAI47_03545 0.14 -3.2 739,922 + IAI47_03545 0.14 +1.5 739,923 - IAI47_03545 0.14 -3.2 739,923 - IAI47_03545 0.14 +0.4 739,935 + IAI47_03545 0.14 +0.3 739,935 + IAI47_03545 0.14 +0.7 739,935 + IAI47_03545 0.14 +3.0 739,935 + IAI47_03545 0.14 +0.7 739,935 + IAI47_03545 0.14 +0.8 739,936 - IAI47_03545 0.14 +1.7 739,936 - IAI47_03545 0.14 -0.3 739,967 + IAI47_03545 0.16 -2.5 739,967 + IAI47_03545 0.16 +1.1 739,968 - IAI47_03545 0.16 +1.4 739,968 - IAI47_03545 0.16 -0.2 739,968 - IAI47_03545 0.16 +0.4 740,027 - IAI47_03545 0.19 +1.3 740,027 - IAI47_03545 0.19 -1.1 740,027 - IAI47_03545 0.19 +0.6 740,027 - IAI47_03545 0.19 -1.6 740,054 + IAI47_03545 0.20 +0.7 740,054 + IAI47_03545 0.20 +0.4 740,055 - IAI47_03545 0.20 +0.9 740,064 - IAI47_03545 0.20 +0.0 740,089 + IAI47_03545 0.21 -1.3 740,089 + IAI47_03545 0.21 +2.3 740,089 + IAI47_03545 0.21 +0.6 740,089 + IAI47_03545 0.21 +0.6 740,089 + IAI47_03545 0.21 +1.9 740,090 - IAI47_03545 0.21 +1.6 740,090 - IAI47_03545 0.21 -2.6 740,090 - IAI47_03545 0.21 +1.2 740,090 - IAI47_03545 0.21 +0.1 740,090 - IAI47_03545 0.21 -0.8 740,090 - IAI47_03545 0.21 -0.4 740,090 - IAI47_03545 0.21 +1.3 740,159 + IAI47_03545 0.25 +3.7 740,159 + IAI47_03545 0.25 +0.4 740,159 + IAI47_03545 0.25 +0.4 740,159 + IAI47_03545 0.25 -0.0 740,159 + IAI47_03545 0.25 +1.3 740,160 - IAI47_03545 0.25 +1.0 740,160 - IAI47_03545 0.25 +0.4 740,160 - IAI47_03545 0.25 -1.8 740,160 - IAI47_03545 0.25 -0.3 740,160 - IAI47_03545 0.25 +4.1 740,160 - IAI47_03545 0.25 +2.1 740,160 - IAI47_03545 0.25 -0.0 740,160 - IAI47_03545 0.25 +0.7 740,160 - IAI47_03545 0.25 -2.4 740,192 + IAI47_03545 0.26 -0.6 740,193 - IAI47_03545 0.26 +1.7 740,204 - IAI47_03545 0.27 +0.1 740,221 + IAI47_03545 0.28 -0.9 740,221 + IAI47_03545 0.28 +0.2 740,224 + IAI47_03545 0.28 +2.9 740,224 + IAI47_03545 0.28 +0.5 740,224 + IAI47_03545 0.28 -0.1 740,224 + IAI47_03545 0.28 -1.1 740,224 + IAI47_03545 0.28 +0.3 740,224 + IAI47_03545 0.28 +1.0 740,225 - IAI47_03545 0.28 +0.1 740,229 + IAI47_03545 0.28 +2.4 740,229 + IAI47_03545 0.28 +0.7 740,293 + IAI47_03545 0.31 +0.9 740,293 + IAI47_03545 0.31 +0.3 740,293 + IAI47_03545 0.31 +0.1 740,293 + IAI47_03545 0.31 +0.7 740,293 + IAI47_03545 0.31 +2.8 740,294 - IAI47_03545 0.31 +1.7 740,294 - IAI47_03545 0.31 -0.9 740,294 - IAI47_03545 0.31 +2.2 740,294 - IAI47_03545 0.31 +1.1 740,294 - IAI47_03545 0.31 -1.8 740,337 - IAI47_03545 0.33 +1.1 740,353 + IAI47_03545 0.34 -1.3 740,353 + IAI47_03545 0.34 -0.5 740,354 - 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Or see this region's nucleotide sequence