Experiment: Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02340 and IAI47_02345 are separated by 182 nucleotides IAI47_02345 and IAI47_02350 are separated by 14 nucleotides IAI47_02350 and IAI47_02355 are separated by 34 nucleotides IAI47_02355 and IAI47_02360 are separated by 221 nucleotides IAI47_02360 and IAI47_02365 are separated by 8 nucleotides
IAI47_02340: IAI47_02340 - 23S ribosomal RNA, at 482,435 to 485,369
_02340
IAI47_02345: IAI47_02345 - 5S ribosomal RNA, at 485,552 to 485,667
_02345
IAI47_02350: IAI47_02350 - tRNA-Thr, at 485,682 to 485,757
_02350
IAI47_02355: IAI47_02355 - 5S ribosomal RNA, at 485,792 to 485,907
_02355
IAI47_02360: IAI47_02360 - amino acid ABC transporter ATP-binding protein, at 486,129 to 486,890
_02360
IAI47_02365: IAI47_02365 - amino acid ABC transporter permease, at 486,899 to 487,999
_02365
Position (kb) 485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 485.395 kb on + strand at 485.405 kb on + strand at 485.470 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.478 kb on + strand at 485.479 kb on - strand at 485.521 kb on + strand at 485.521 kb on + strand at 485.652 kb on + strand, within IAI47_02345 at 485.652 kb on + strand, within IAI47_02345 at 485.676 kb on + strand at 485.747 kb on + strand, within IAI47_02350 at 485.780 kb on + strand at 485.780 kb on + strand at 485.780 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.914 kb on + strand at 485.933 kb on + strand at 485.933 kb on + strand at 485.933 kb on + strand at 485.933 kb on + strand at 485.989 kb on - strand at 485.989 kb on - strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.001 kb on + strand at 486.002 kb on - strand at 486.002 kb on - strand at 486.002 kb on - strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.109 kb on + strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.110 kb on - strand at 486.126 kb on + strand at 486.127 kb on - strand at 486.137 kb on + strand at 486.147 kb on + strand at 486.174 kb on - strand at 486.174 kb on - strand at 486.174 kb on - strand at 486.230 kb on + strand, within IAI47_02360 at 486.230 kb on + strand, within IAI47_02360 at 486.231 kb on - strand, within IAI47_02360 at 486.231 kb on - strand, within IAI47_02360 at 486.324 kb on - strand, within IAI47_02360 at 486.339 kb on - strand, within IAI47_02360 at 486.383 kb on + strand, within IAI47_02360 at 486.384 kb on - strand, within IAI47_02360 at 486.384 kb on - strand, within IAI47_02360 at 486.384 kb on - strand, within IAI47_02360 at 486.384 kb on - strand, within IAI47_02360 at 486.389 kb on + strand, within IAI47_02360 at 486.398 kb on + strand, within IAI47_02360 at 486.398 kb on + strand, within IAI47_02360 at 486.398 kb on + strand, within IAI47_02360 at 486.398 kb on + strand, within IAI47_02360 at 486.398 kb on + strand, within IAI47_02360 at 486.399 kb on - strand, within IAI47_02360 at 486.399 kb on - strand, within IAI47_02360 at 486.399 kb on - strand, within IAI47_02360 at 486.399 kb on - strand, within IAI47_02360 at 486.462 kb on - strand, within IAI47_02360 at 486.462 kb on - strand, within IAI47_02360 at 486.496 kb on + strand, within IAI47_02360 at 486.496 kb on + strand, within IAI47_02360 at 486.496 kb on + strand, within IAI47_02360 at 486.497 kb on - strand, within IAI47_02360 at 486.497 kb on - strand, within IAI47_02360 at 486.527 kb on + strand, within IAI47_02360 at 486.528 kb on - strand, within IAI47_02360 at 486.560 kb on + strand, within IAI47_02360 at 486.561 kb on - strand, within IAI47_02360 at 486.561 kb on - strand, within IAI47_02360 at 486.561 kb on - strand, within IAI47_02360 at 486.561 kb on - strand, within IAI47_02360 at 486.561 kb on - strand, within IAI47_02360 at 486.573 kb on + strand, within IAI47_02360 at 486.573 kb on + strand, within IAI47_02360 at 486.574 kb on - strand, within IAI47_02360 at 486.596 kb on + strand, within IAI47_02360 at 486.597 kb on - strand, within IAI47_02360 at 486.609 kb on + strand, within IAI47_02360 at 486.609 kb on + strand, within IAI47_02360 at 486.609 kb on + strand, within IAI47_02360 at 486.609 kb on + strand, within IAI47_02360 at 486.609 kb on + strand, within IAI47_02360 at 486.610 kb on - strand, within IAI47_02360 at 486.618 kb on + strand, within IAI47_02360 at 486.618 kb on + strand, within IAI47_02360 at 486.618 kb on + strand, within IAI47_02360 at 486.618 kb on + strand, within IAI47_02360 at 486.618 kb on + strand, within IAI47_02360 at 486.619 kb on - strand, within IAI47_02360 at 486.619 kb on - strand, within IAI47_02360 at 486.713 kb on + strand, within IAI47_02360 at 486.713 kb on + strand, within IAI47_02360 at 486.713 kb on + strand, within IAI47_02360 at 486.713 kb on + strand, within IAI47_02360 at 486.713 kb on + strand, within IAI47_02360 at 486.713 kb on + strand, within IAI47_02360 at 486.714 kb on - strand, within IAI47_02360 at 486.714 kb on - strand, within IAI47_02360 at 486.716 kb on + strand, within IAI47_02360 at 486.716 kb on + strand, within IAI47_02360 at 486.716 kb on + strand, within IAI47_02360 at 486.716 kb on + strand, within IAI47_02360 at 486.717 kb on - strand, within IAI47_02360 at 486.717 kb on - strand, within IAI47_02360 at 486.717 kb on - strand, within IAI47_02360 at 486.807 kb on + strand, within IAI47_02360 at 486.808 kb on - strand, within IAI47_02360 at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.830 kb on + strand at 486.831 kb on - strand at 486.831 kb on - strand at 486.831 kb on - strand at 486.831 kb on - strand at 486.878 kb on + strand at 486.878 kb on + strand at 486.878 kb on + strand at 486.878 kb on + strand at 486.878 kb on + strand at 486.879 kb on - strand at 486.879 kb on - strand at 486.879 kb on - strand at 486.879 kb on - strand at 486.892 kb on + strand at 486.892 kb on + strand at 486.892 kb on + strand at 486.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 485,395 + -3.5 485,405 + -3.3 485,470 + -1.4 485,478 + +1.3 485,478 + +0.8 485,478 + -1.4 485,478 + -1.2 485,478 + -1.3 485,478 + -2.0 485,478 + -2.8 485,479 - +0.8 485,521 + +2.0 485,521 + -1.8 485,652 + IAI47_02345 0.86 -2.0 485,652 + IAI47_02345 0.86 -1.9 485,676 + -0.2 485,747 + IAI47_02350 0.86 -0.4 485,780 + +0.1 485,780 + -1.4 485,780 + +1.2 485,914 + -4.0 485,914 + +0.8 485,914 + -0.6 485,914 + -0.2 485,914 + -1.6 485,914 + +2.1 485,914 + +0.6 485,914 + +1.0 485,933 + -0.7 485,933 + +2.4 485,933 + -0.2 485,933 + +0.8 485,989 - +1.6 485,989 - -2.5 486,001 + -0.6 486,001 + -1.6 486,001 + +0.3 486,001 + +1.1 486,001 + +0.7 486,001 + +1.8 486,002 - +0.8 486,002 - -2.0 486,002 - -0.7 486,109 + +0.4 486,109 + -3.0 486,109 + +0.6 486,109 + +0.5 486,109 + -0.7 486,110 - +0.1 486,110 - -0.4 486,110 - -1.0 486,110 - -2.0 486,110 - -1.0 486,126 + -3.8 486,127 - +0.8 486,137 + -2.0 486,147 + +0.2 486,174 - +0.8 486,174 - +1.2 486,174 - +0.4 486,230 + IAI47_02360 0.13 -1.7 486,230 + IAI47_02360 0.13 +2.5 486,231 - IAI47_02360 0.13 +1.1 486,231 - IAI47_02360 0.13 -3.1 486,324 - IAI47_02360 0.26 +0.6 486,339 - IAI47_02360 0.28 +1.7 486,383 + IAI47_02360 0.33 +0.4 486,384 - IAI47_02360 0.33 -1.0 486,384 - IAI47_02360 0.33 +2.2 486,384 - IAI47_02360 0.33 -0.9 486,384 - IAI47_02360 0.33 +4.2 486,389 + IAI47_02360 0.34 +1.0 486,398 + IAI47_02360 0.35 +0.3 486,398 + IAI47_02360 0.35 +2.1 486,398 + IAI47_02360 0.35 +0.8 486,398 + IAI47_02360 0.35 -1.7 486,398 + IAI47_02360 0.35 +1.0 486,399 - IAI47_02360 0.35 +1.0 486,399 - IAI47_02360 0.35 +0.9 486,399 - IAI47_02360 0.35 -2.8 486,399 - IAI47_02360 0.35 +2.2 486,462 - IAI47_02360 0.44 -1.7 486,462 - IAI47_02360 0.44 +1.5 486,496 + IAI47_02360 0.48 +1.3 486,496 + IAI47_02360 0.48 -0.0 486,496 + IAI47_02360 0.48 -0.1 486,497 - IAI47_02360 0.48 -1.1 486,497 - IAI47_02360 0.48 +0.6 486,527 + IAI47_02360 0.52 +0.2 486,528 - IAI47_02360 0.52 -0.0 486,560 + IAI47_02360 0.57 -2.4 486,561 - IAI47_02360 0.57 -1.4 486,561 - IAI47_02360 0.57 +0.8 486,561 - IAI47_02360 0.57 +0.8 486,561 - IAI47_02360 0.57 +0.4 486,561 - IAI47_02360 0.57 +0.0 486,573 + IAI47_02360 0.58 -1.8 486,573 + IAI47_02360 0.58 -1.2 486,574 - IAI47_02360 0.58 +1.0 486,596 + IAI47_02360 0.61 -0.7 486,597 - IAI47_02360 0.61 +0.8 486,609 + IAI47_02360 0.63 -1.2 486,609 + IAI47_02360 0.63 -2.3 486,609 + IAI47_02360 0.63 -1.9 486,609 + IAI47_02360 0.63 +2.9 486,609 + IAI47_02360 0.63 -2.1 486,610 - IAI47_02360 0.63 -0.4 486,618 + IAI47_02360 0.64 -0.8 486,618 + IAI47_02360 0.64 +0.7 486,618 + IAI47_02360 0.64 +0.3 486,618 + IAI47_02360 0.64 +2.1 486,618 + IAI47_02360 0.64 +1.0 486,619 - IAI47_02360 0.64 -2.5 486,619 - IAI47_02360 0.64 +1.2 486,713 + IAI47_02360 0.77 +0.9 486,713 + IAI47_02360 0.77 -0.8 486,713 + IAI47_02360 0.77 +2.8 486,713 + IAI47_02360 0.77 +0.5 486,713 + IAI47_02360 0.77 -0.7 486,713 + IAI47_02360 0.77 -0.2 486,714 - IAI47_02360 0.77 +0.9 486,714 - IAI47_02360 0.77 +1.3 486,716 + IAI47_02360 0.77 -0.2 486,716 + IAI47_02360 0.77 -0.8 486,716 + IAI47_02360 0.77 +0.2 486,716 + IAI47_02360 0.77 -0.5 486,717 - IAI47_02360 0.77 -1.7 486,717 - IAI47_02360 0.77 +3.3 486,717 - IAI47_02360 0.77 -1.4 486,807 + IAI47_02360 0.89 +3.0 486,808 - IAI47_02360 0.89 +0.3 486,830 + +0.7 486,830 + -1.0 486,830 + -2.3 486,830 + +0.6 486,830 + +1.8 486,830 + +1.1 486,830 + -1.2 486,830 + +1.4 486,830 + +1.4 486,830 + +0.1 486,831 - -1.7 486,831 - +1.2 486,831 - -0.2 486,831 - +0.1 486,878 + +1.0 486,878 + +2.9 486,878 + -0.0 486,878 + -2.9 486,878 + +2.1 486,879 - +1.5 486,879 - -0.6 486,879 - -2.5 486,879 - +0.8 486,892 + +0.7 486,892 + -1.0 486,892 + +1.2 486,892 + +0.2
Or see this region's nucleotide sequence