Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22020

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22015 and AO353_22020 are separated by 28 nucleotidesAO353_22020 and AO353_22025 are separated by 75 nucleotidesAO353_22025 and AO353_22030 are separated by 154 nucleotides AO353_22015: AO353_22015 - short-chain dehydrogenase, at 4,821,818 to 4,823,008 _22015 AO353_22020: AO353_22020 - hypothetical protein, at 4,823,037 to 4,823,474 _22020 AO353_22025: AO353_22025 - iron-sulfur cluster repair di-iron protein, at 4,823,550 to 4,824,224 _22025 AO353_22030: AO353_22030 - transcriptional regulator, at 4,824,379 to 4,825,908 _22030 Position (kb) 4823 4824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.246 kb on + strand, within AO353_22015at 4822.247 kb on - strand, within AO353_22015at 4822.247 kb on - strand, within AO353_22015at 4822.247 kb on - strand, within AO353_22015at 4822.247 kb on - strand, within AO353_22015at 4822.247 kb on - strand, within AO353_22015at 4822.247 kb on - strand, within AO353_22015at 4822.250 kb on + strand, within AO353_22015at 4822.304 kb on + strand, within AO353_22015at 4822.508 kb on + strand, within AO353_22015at 4822.508 kb on + strand, within AO353_22015at 4822.508 kb on + strand, within AO353_22015at 4822.508 kb on + strand, within AO353_22015at 4822.509 kb on - strand, within AO353_22015at 4822.509 kb on - strand, within AO353_22015at 4822.509 kb on - strand, within AO353_22015at 4822.652 kb on + strand, within AO353_22015at 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.040 kb on + strandat 4823.041 kb on - strandat 4823.041 kb on - strandat 4823.047 kb on - strandat 4823.047 kb on - strandat 4823.047 kb on - strandat 4823.190 kb on - strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.218 kb on + strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.219 kb on - strand, within AO353_22020at 4823.220 kb on + strand, within AO353_22020at 4823.221 kb on - strand, within AO353_22020at 4823.221 kb on - strand, within AO353_22020at 4823.221 kb on - strand, within AO353_22020at 4823.291 kb on + strand, within AO353_22020at 4823.291 kb on + strand, within AO353_22020at 4823.291 kb on + strand, within AO353_22020at 4823.340 kb on + strand, within AO353_22020at 4823.340 kb on + strand, within AO353_22020at 4823.340 kb on + strand, within AO353_22020at 4823.340 kb on + strand, within AO353_22020at 4823.341 kb on - strand, within AO353_22020at 4823.341 kb on - strand, within AO353_22020at 4823.341 kb on - strand, within AO353_22020at 4823.341 kb on - strand, within AO353_22020at 4823.341 kb on - strand, within AO353_22020at 4823.460 kb on + strandat 4823.460 kb on + strandat 4823.461 kb on - strandat 4823.492 kb on + strandat 4823.493 kb on - strandat 4823.685 kb on + strand, within AO353_22025at 4823.685 kb on + strand, within AO353_22025at 4823.685 kb on + strandat 4823.686 kb on - strand, within AO353_22025at 4824.150 kb on - strand, within AO353_22025at 4824.150 kb on - strand, within AO353_22025at 4824.150 kb on - strand, within AO353_22025at 4824.235 kb on + strandat 4824.236 kb on - strandat 4824.236 kb on - strandat 4824.236 kb on - strandat 4824.282 kb on + strandat 4824.315 kb on + strandat 4824.327 kb on + strandat 4824.327 kb on + strandat 4824.328 kb on - strandat 4824.361 kb on + strandat 4824.361 kb on + strandat 4824.361 kb on + strandat 4824.361 kb on + strandat 4824.362 kb on - strandat 4824.362 kb on - strandat 4824.362 kb on - strandat 4824.362 kb on - strandat 4824.368 kb on + strandat 4824.372 kb on + strandat 4824.372 kb on + strandat 4824.372 kb on + strandat 4824.372 kb on + strandat 4824.372 kb on + strandat 4824.372 kb on + strandat 4824.372 kb on + strandat 4824.373 kb on - strandat 4824.373 kb on - strandat 4824.375 kb on + strandat 4824.375 kb on + strandat 4824.375 kb on + strandat 4824.376 kb on - strandat 4824.466 kb on + strandat 4824.466 kb on + strandat 4824.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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4,822,246 + AO353_22015 0.36 +1.8
4,822,246 + AO353_22015 0.36 +0.3
4,822,246 + AO353_22015 0.36 +1.2
4,822,246 + AO353_22015 0.36 +1.0
4,822,246 + AO353_22015 0.36 -0.5
4,822,246 + AO353_22015 0.36 +0.7
4,822,246 + AO353_22015 0.36 +2.6
4,822,246 + AO353_22015 0.36 -1.0
4,822,246 + AO353_22015 0.36 +1.2
4,822,247 - AO353_22015 0.36 +1.3
4,822,247 - AO353_22015 0.36 -1.4
4,822,247 - AO353_22015 0.36 -1.5
4,822,247 - AO353_22015 0.36 -0.1
4,822,247 - AO353_22015 0.36 -0.1
4,822,247 - AO353_22015 0.36 +0.0
4,822,250 + AO353_22015 0.36 +1.4
4,822,304 + AO353_22015 0.41 +0.7
4,822,508 + AO353_22015 0.58 +1.2
4,822,508 + AO353_22015 0.58 -1.3
4,822,508 + AO353_22015 0.58 +1.6
4,822,508 + AO353_22015 0.58 -1.0
4,822,509 - AO353_22015 0.58 +0.3
4,822,509 - AO353_22015 0.58 +1.6
4,822,509 - AO353_22015 0.58 +0.0
4,822,652 + AO353_22015 0.70 -0.5
4,823,040 + -1.5
4,823,040 + -0.2
4,823,040 + -1.5
4,823,040 + -0.3
4,823,040 + +1.0
4,823,040 + -1.4
4,823,040 + +0.9
4,823,040 + -1.5
4,823,040 + +0.8
4,823,040 + +1.0
4,823,040 + +0.2
4,823,041 - -0.0
4,823,041 - -3.9
4,823,047 - +1.0
4,823,047 - -3.2
4,823,047 - +0.7
4,823,190 - AO353_22020 0.35 +0.0
4,823,218 + AO353_22020 0.41 +1.0
4,823,218 + AO353_22020 0.41 -0.3
4,823,218 + AO353_22020 0.41 -1.8
4,823,218 + AO353_22020 0.41 -0.3
4,823,218 + AO353_22020 0.41 -1.8
4,823,218 + AO353_22020 0.41 +1.0
4,823,218 + AO353_22020 0.41 +1.2
4,823,218 + AO353_22020 0.41 -0.3
4,823,219 - AO353_22020 0.42 +0.2
4,823,219 - AO353_22020 0.42 +1.4
4,823,219 - AO353_22020 0.42 -1.3
4,823,219 - AO353_22020 0.42 +0.7
4,823,219 - AO353_22020 0.42 +1.6
4,823,219 - AO353_22020 0.42 -1.7
4,823,219 - AO353_22020 0.42 +0.6
4,823,220 + AO353_22020 0.42 +1.2
4,823,221 - AO353_22020 0.42 -1.6
4,823,221 - AO353_22020 0.42 -0.5
4,823,221 - AO353_22020 0.42 +0.2
4,823,291 + AO353_22020 0.58 +0.6
4,823,291 + AO353_22020 0.58 +1.5
4,823,291 + AO353_22020 0.58 -2.3
4,823,340 + AO353_22020 0.69 +2.2
4,823,340 + AO353_22020 0.69 -2.2
4,823,340 + AO353_22020 0.69 +1.3
4,823,340 + AO353_22020 0.69 +0.2
4,823,341 - AO353_22020 0.69 +0.6
4,823,341 - AO353_22020 0.69 +1.2
4,823,341 - AO353_22020 0.69 +0.4
4,823,341 - AO353_22020 0.69 +1.1
4,823,341 - AO353_22020 0.69 +0.2
4,823,460 + +0.4
4,823,460 + -2.6
4,823,461 - +1.6
4,823,492 + -0.4
4,823,493 - +0.2
4,823,685 + AO353_22025 0.20 +0.9
4,823,685 + AO353_22025 0.20 -0.8
4,823,685 + +0.5
4,823,686 - AO353_22025 0.20 -0.5
4,824,150 - AO353_22025 0.89 +0.5
4,824,150 - AO353_22025 0.89 -2.0
4,824,150 - AO353_22025 0.89 -1.8
4,824,235 + -1.1
4,824,236 - +0.1
4,824,236 - +2.7
4,824,236 - +0.5
4,824,282 + -2.2
4,824,315 + +2.2
4,824,327 + -0.8
4,824,327 + -1.0
4,824,328 - -0.3
4,824,361 + +0.9
4,824,361 + -0.4
4,824,361 + -1.0
4,824,361 + +1.2
4,824,362 - -0.5
4,824,362 - -1.1
4,824,362 - -2.6
4,824,362 - +0.7
4,824,368 + -0.9
4,824,372 + -0.0
4,824,372 + -0.8
4,824,372 + -0.3
4,824,372 + -1.7
4,824,372 + +0.2
4,824,372 + +2.3
4,824,372 + -2.9
4,824,373 - -0.6
4,824,373 - -2.3
4,824,375 + +0.2
4,824,375 + -1.9
4,824,375 + +0.3
4,824,376 - +0.2
4,824,466 + +0.5
4,824,466 + -0.8
4,824,467 - -1.0

Or see this region's nucleotide sequence