Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21260

Experiment: Parabanic Acid (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_21250 and AO353_21255 are separated by 205 nucleotidesAO353_21255 and AO353_21260 are separated by 1 nucleotidesAO353_21260 and AO353_21265 overlap by 11 nucleotides AO353_21250: AO353_21250 - peptidase, at 4,648,988 to 4,650,466 _21250 AO353_21255: AO353_21255 - ABC transporter ATP-binding protein, at 4,650,672 to 4,651,340 _21255 AO353_21260: AO353_21260 - ABC transporter permease, at 4,651,342 to 4,653,819 _21260 AO353_21265: AO353_21265 - iron ABC transporter permease, at 4,653,809 to 4,654,882 _21265 Position (kb) 4651 4652 4653 4654Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4650.354 kb on + strandat 4650.535 kb on + strandat 4650.536 kb on - strandat 4650.540 kb on + strandat 4650.702 kb on + strandat 4650.702 kb on + strandat 4650.703 kb on - strandat 4650.703 kb on - strandat 4650.945 kb on + strand, within AO353_21255at 4650.945 kb on + strand, within AO353_21255at 4650.945 kb on + strand, within AO353_21255at 4650.945 kb on + strand, within AO353_21255at 4650.945 kb on + strand, within AO353_21255at 4650.946 kb on - strand, within AO353_21255at 4650.946 kb on - strand, within AO353_21255at 4650.946 kb on - strand, within AO353_21255at 4650.946 kb on - strand, within AO353_21255at 4650.946 kb on - strand, within AO353_21255at 4651.063 kb on + strand, within AO353_21255at 4651.064 kb on - strand, within AO353_21255at 4651.064 kb on - strand, within AO353_21255at 4651.342 kb on - strandat 4651.342 kb on - strandat 4651.458 kb on - strandat 4651.604 kb on + strand, within AO353_21260at 4651.764 kb on + strand, within AO353_21260at 4651.803 kb on - strand, within AO353_21260at 4651.803 kb on - strand, within AO353_21260at 4651.803 kb on - strand, within AO353_21260at 4651.883 kb on + strand, within AO353_21260at 4651.883 kb on + strand, within AO353_21260at 4651.883 kb on + strand, within AO353_21260at 4652.328 kb on - strand, within AO353_21260at 4652.328 kb on - strand, within AO353_21260at 4652.328 kb on - strand, within AO353_21260at 4652.328 kb on - strand, within AO353_21260at 4652.328 kb on - strand, within AO353_21260at 4652.328 kb on - strand, within AO353_21260at 4652.330 kb on - strand, within AO353_21260at 4652.330 kb on - strand, within AO353_21260at 4652.655 kb on - strand, within AO353_21260at 4652.857 kb on + strand, within AO353_21260at 4652.857 kb on + strand, within AO353_21260at 4652.858 kb on - strand, within AO353_21260at 4652.858 kb on - strand, within AO353_21260at 4653.008 kb on - strand, within AO353_21260at 4653.184 kb on + strand, within AO353_21260at 4653.184 kb on + strand, within AO353_21260at 4653.184 kb on + strand, within AO353_21260at 4653.184 kb on + strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.185 kb on - strand, within AO353_21260at 4653.244 kb on + strand, within AO353_21260at 4653.244 kb on + strand, within AO353_21260at 4653.244 kb on + strand, within AO353_21260at 4653.245 kb on - strand, within AO353_21260at 4653.769 kb on + strandat 4653.817 kb on + strandat 4653.818 kb on - strandat 4653.818 kb on - strandat 4653.818 kb on - strandat 4653.998 kb on + strand, within AO353_21265at 4653.998 kb on + strand, within AO353_21265at 4653.998 kb on + strand, within AO353_21265at 4653.998 kb on + strand, within AO353_21265at 4653.998 kb on + strand, within AO353_21265at 4653.999 kb on - strand, within AO353_21265at 4653.999 kb on - strand, within AO353_21265at 4653.999 kb on - strand, within AO353_21265at 4653.999 kb on - strand, within AO353_21265at 4653.999 kb on - strand, within AO353_21265at 4654.154 kb on + strand, within AO353_21265at 4654.155 kb on - strand, within AO353_21265at 4654.155 kb on - strand, within AO353_21265at 4654.313 kb on + strand, within AO353_21265at 4654.313 kb on + strand, within AO353_21265at 4654.400 kb on + strand, within AO353_21265at 4654.401 kb on - strand, within AO353_21265at 4654.401 kb on - strand, within AO353_21265at 4654.401 kb on - strand, within AO353_21265at 4654.401 kb on - strand, within AO353_21265at 4654.401 kb on - strand, within AO353_21265at 4654.401 kb on - strand, within AO353_21265at 4654.403 kb on + strand, within AO353_21265at 4654.403 kb on + strand, within AO353_21265at 4654.403 kb on + strand, within AO353_21265at 4654.403 kb on + strand, within AO353_21265at 4654.403 kb on + strand, within AO353_21265at 4654.404 kb on - strand, within AO353_21265at 4654.404 kb on - strand, within AO353_21265at 4654.404 kb on - strand, within AO353_21265at 4654.404 kb on - strand, within AO353_21265at 4654.406 kb on + strand, within AO353_21265at 4654.406 kb on + strand, within AO353_21265at 4654.407 kb on - strand, within AO353_21265at 4654.407 kb on - strand, within AO353_21265at 4654.407 kb on - strand, within AO353_21265at 4654.407 kb on - strand, within AO353_21265at 4654.407 kb on - strand, within AO353_21265at 4654.460 kb on + strand, within AO353_21265at 4654.460 kb on + strand, within AO353_21265at 4654.461 kb on - strand, within AO353_21265at 4654.461 kb on - strand, within AO353_21265at 4654.580 kb on + strand, within AO353_21265at 4654.610 kb on + strand, within AO353_21265at 4654.610 kb on + strand, within AO353_21265at 4654.611 kb on - strand, within AO353_21265at 4654.611 kb on - strand, within AO353_21265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
remove
4,650,354 + +0.0
4,650,535 + +0.1
4,650,536 - -2.1
4,650,540 + +0.9
4,650,702 + +2.9
4,650,702 + +1.3
4,650,703 - -0.9
4,650,703 - +0.1
4,650,945 + AO353_21255 0.41 +0.9
4,650,945 + AO353_21255 0.41 +1.3
4,650,945 + AO353_21255 0.41 -1.0
4,650,945 + AO353_21255 0.41 +0.7
4,650,945 + AO353_21255 0.41 +0.3
4,650,946 - AO353_21255 0.41 -1.2
4,650,946 - AO353_21255 0.41 -0.6
4,650,946 - AO353_21255 0.41 -0.2
4,650,946 - AO353_21255 0.41 +1.2
4,650,946 - AO353_21255 0.41 -0.4
4,651,063 + AO353_21255 0.58 +3.0
4,651,064 - AO353_21255 0.59 +1.7
4,651,064 - AO353_21255 0.59 +0.8
4,651,342 - +1.3
4,651,342 - +0.9
4,651,458 - +2.0
4,651,604 + AO353_21260 0.11 +1.1
4,651,764 + AO353_21260 0.17 +0.1
4,651,803 - AO353_21260 0.19 -3.3
4,651,803 - AO353_21260 0.19 +0.8
4,651,803 - AO353_21260 0.19 -2.3
4,651,883 + AO353_21260 0.22 -1.2
4,651,883 + AO353_21260 0.22 +1.6
4,651,883 + AO353_21260 0.22 +0.9
4,652,328 - AO353_21260 0.40 +1.1
4,652,328 - AO353_21260 0.40 +1.6
4,652,328 - AO353_21260 0.40 +0.9
4,652,328 - AO353_21260 0.40 -1.4
4,652,328 - AO353_21260 0.40 -1.4
4,652,328 - AO353_21260 0.40 +3.1
4,652,330 - AO353_21260 0.40 +2.4
4,652,330 - AO353_21260 0.40 -0.1
4,652,655 - AO353_21260 0.53 +0.4
4,652,857 + AO353_21260 0.61 +0.5
4,652,857 + AO353_21260 0.61 -0.8
4,652,858 - AO353_21260 0.61 -1.0
4,652,858 - AO353_21260 0.61 +0.3
4,653,008 - AO353_21260 0.67 +1.4
4,653,184 + AO353_21260 0.74 +1.3
4,653,184 + AO353_21260 0.74 +0.0
4,653,184 + AO353_21260 0.74 -0.3
4,653,184 + AO353_21260 0.74 -1.9
4,653,185 - AO353_21260 0.74 -1.9
4,653,185 - AO353_21260 0.74 -0.4
4,653,185 - AO353_21260 0.74 -1.9
4,653,185 - AO353_21260 0.74 +1.6
4,653,185 - AO353_21260 0.74 -0.2
4,653,185 - AO353_21260 0.74 +0.1
4,653,185 - AO353_21260 0.74 -1.8
4,653,244 + AO353_21260 0.77 +0.0
4,653,244 + AO353_21260 0.77 +1.3
4,653,244 + AO353_21260 0.77 +0.6
4,653,245 - AO353_21260 0.77 +0.6
4,653,769 + +0.9
4,653,817 + +0.8
4,653,818 - +0.3
4,653,818 - -0.6
4,653,818 - +0.6
4,653,998 + AO353_21265 0.18 +1.1
4,653,998 + AO353_21265 0.18 +1.1
4,653,998 + AO353_21265 0.18 -2.7
4,653,998 + AO353_21265 0.18 -0.5
4,653,998 + AO353_21265 0.18 +0.4
4,653,999 - AO353_21265 0.18 -2.6
4,653,999 - AO353_21265 0.18 -0.0
4,653,999 - AO353_21265 0.18 -0.4
4,653,999 - AO353_21265 0.18 -1.2
4,653,999 - AO353_21265 0.18 +0.1
4,654,154 + AO353_21265 0.32 -0.3
4,654,155 - AO353_21265 0.32 +0.9
4,654,155 - AO353_21265 0.32 -0.7
4,654,313 + AO353_21265 0.47 -0.3
4,654,313 + AO353_21265 0.47 -0.7
4,654,400 + AO353_21265 0.55 +0.1
4,654,401 - AO353_21265 0.55 -3.2
4,654,401 - AO353_21265 0.55 +0.1
4,654,401 - AO353_21265 0.55 -0.7
4,654,401 - AO353_21265 0.55 +0.2
4,654,401 - AO353_21265 0.55 +1.0
4,654,401 - AO353_21265 0.55 -1.0
4,654,403 + AO353_21265 0.55 +0.5
4,654,403 + AO353_21265 0.55 -1.3
4,654,403 + AO353_21265 0.55 -0.1
4,654,403 + AO353_21265 0.55 -0.4
4,654,403 + AO353_21265 0.55 -0.2
4,654,404 - AO353_21265 0.55 -1.8
4,654,404 - AO353_21265 0.55 +1.5
4,654,404 - AO353_21265 0.55 +0.4
4,654,404 - AO353_21265 0.55 +1.0
4,654,406 + AO353_21265 0.56 +0.9
4,654,406 + AO353_21265 0.56 +0.1
4,654,407 - AO353_21265 0.56 +0.7
4,654,407 - AO353_21265 0.56 -1.3
4,654,407 - AO353_21265 0.56 +0.4
4,654,407 - AO353_21265 0.56 -0.6
4,654,407 - AO353_21265 0.56 +2.1
4,654,460 + AO353_21265 0.61 +0.6
4,654,460 + AO353_21265 0.61 -0.2
4,654,461 - AO353_21265 0.61 -0.6
4,654,461 - AO353_21265 0.61 +0.9
4,654,580 + AO353_21265 0.72 -0.8
4,654,610 + AO353_21265 0.75 -0.9
4,654,610 + AO353_21265 0.75 +0.4
4,654,611 - AO353_21265 0.75 +0.9
4,654,611 - AO353_21265 0.75 +0.3

Or see this region's nucleotide sequence