Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16550

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16545 and AO353_16550 are separated by 274 nucleotidesAO353_16550 and AO353_16555 are separated by 5 nucleotides AO353_16545: AO353_16545 - tRNA(Ile)-lysidine synthetase, at 3,675,330 to 3,676,643 _16545 AO353_16550: AO353_16550 - CTP synthase, at 3,676,918 to 3,678,549 _16550 AO353_16555: AO353_16555 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 3,678,555 to 3,679,400 _16555 Position (kb) 3676 3677 3678 3679Strain fitness (log2 ratio) -2 -1 0 1 2at 3676.721 kb on + strandat 3676.759 kb on + strandat 3676.771 kb on + strandat 3676.830 kb on + strandat 3676.834 kb on + strandat 3676.907 kb on + strandat 3679.421 kb on + strandat 3679.421 kb on + strandat 3679.466 kb on + strandat 3679.466 kb on + strandat 3679.467 kb on - strandat 3679.528 kb on + strandat 3679.529 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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3,676,721 + +1.8
3,676,759 + +1.9
3,676,771 + -2.2
3,676,830 + +1.0
3,676,834 + -0.5
3,676,907 + +0.6
3,679,421 + +0.5
3,679,421 + +0.8
3,679,466 + -0.2
3,679,466 + +0.7
3,679,467 - +0.4
3,679,528 + +1.0
3,679,529 - +0.6

Or see this region's nucleotide sequence