Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03490 and AO353_03495 are separated by 495 nucleotides AO353_03495 and AO353_03500 are separated by 9 nucleotides AO353_03500 and AO353_03505 are separated by 185 nucleotides
AO353_03490: AO353_03490 - Fis family transcriptional regulator, at 745,839 to 747,347
_03490
AO353_03495: AO353_03495 - glycine cleavage system protein H, at 747,843 to 748,226
_03495
AO353_03500: AO353_03500 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) <small>(from data)</small>, at 748,236 to 751,088
_03500
AO353_03505: AO353_03505 - serine dehydratase, at 751,274 to 752,650
_03505
Position (kb) 748
749
750
751
752 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 747.243 kb on + strand at 747.244 kb on - strand at 747.244 kb on - strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.252 kb on + strand at 747.253 kb on - strand at 747.253 kb on - strand at 747.324 kb on + strand at 747.324 kb on + strand at 747.325 kb on - strand at 747.418 kb on + strand at 747.437 kb on + strand at 747.437 kb on + strand at 747.437 kb on + strand at 747.437 kb on + strand at 747.438 kb on - strand at 747.438 kb on - strand at 747.438 kb on - strand at 747.438 kb on - strand at 747.600 kb on - strand at 747.631 kb on - strand at 747.668 kb on + strand at 747.710 kb on - strand at 747.751 kb on + strand at 747.752 kb on - strand at 747.752 kb on - strand at 747.832 kb on + strand at 747.833 kb on - strand at 747.833 kb on - strand at 747.861 kb on - strand at 747.958 kb on + strand, within AO353_03495 at 747.959 kb on - strand, within AO353_03495 at 747.981 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.038 kb on + strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.039 kb on - strand, within AO353_03495 at 748.192 kb on - strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.246 kb on + strand at 748.247 kb on - strand at 748.247 kb on - strand at 748.247 kb on - strand at 748.247 kb on - strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.252 kb on + strand at 748.253 kb on - strand at 748.479 kb on + strand at 748.479 kb on + strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.480 kb on - strand at 748.494 kb on + strand at 748.494 kb on + strand at 748.494 kb on + strand at 748.495 kb on - strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.497 kb on + strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.498 kb on - strand at 748.508 kb on + strand at 748.554 kb on + strand, within AO353_03500 at 748.554 kb on + strand, within AO353_03500 at 748.554 kb on + strand, within AO353_03500 at 748.555 kb on - strand, within AO353_03500 at 748.555 kb on - strand, within AO353_03500 at 748.563 kb on + strand, within AO353_03500 at 748.563 kb on + strand, within AO353_03500 at 748.564 kb on - strand, within AO353_03500 at 749.085 kb on + strand, within AO353_03500 at 749.085 kb on + strand, within AO353_03500 at 749.085 kb on + strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.086 kb on - strand, within AO353_03500 at 749.201 kb on + strand, within AO353_03500 at 749.202 kb on - strand, within AO353_03500 at 749.202 kb on - strand, within AO353_03500 at 749.202 kb on - strand, within AO353_03500 at 749.249 kb on - strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.271 kb on + strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand at 749.272 kb on - strand, within AO353_03500 at 749.272 kb on - strand, within AO353_03500 at 749.280 kb on + strand, within AO353_03500 at 749.291 kb on + strand, within AO353_03500 at 749.695 kb on - strand, within AO353_03500 at 749.952 kb on + strand, within AO353_03500 at 750.180 kb on + strand, within AO353_03500 at 750.180 kb on + strand, within AO353_03500 at 750.180 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.258 kb on + strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.259 kb on - strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.513 kb on + strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.514 kb on - strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.579 kb on + strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.580 kb on - strand, within AO353_03500 at 750.607 kb on - strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.618 kb on + strand, within AO353_03500 at 750.619 kb on - strand, within AO353_03500 at 750.952 kb on - strand at 750.973 kb on - strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.002 kb on + strand at 751.003 kb on - strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.080 kb on + strand at 751.081 kb on - strand at 751.081 kb on - strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.091 kb on + strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.092 kb on - strand at 751.146 kb on + strand at 751.146 kb on + strand at 751.147 kb on - strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.249 kb on + strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.250 kb on - strand at 751.251 kb on + strand at 751.252 kb on - strand at 751.252 kb on - strand at 751.281 kb on + strand at 751.638 kb on - strand, within AO353_03505 at 751.703 kb on + strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.704 kb on - strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.771 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.832 kb on + strand, within AO353_03505 at 751.833 kb on - strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.084 kb on + strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505 at 752.085 kb on - strand, within AO353_03505
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 747,243 + +1.5 747,244 - -0.3 747,244 - +1.3 747,252 + +0.1 747,252 + -1.1 747,252 + -2.4 747,252 + +0.2 747,252 + -0.5 747,253 - +1.3 747,253 - -0.2 747,324 + -1.4 747,324 + -1.3 747,325 - -0.6 747,418 + +2.0 747,437 + +1.5 747,437 + +0.9 747,437 + +0.0 747,437 + +2.1 747,438 - +0.5 747,438 - +2.3 747,438 - -0.5 747,438 - -2.7 747,600 - -1.1 747,631 - +0.2 747,668 + -1.1 747,710 - +2.0 747,751 + -1.8 747,752 - +2.2 747,752 - -1.1 747,832 + +1.4 747,833 - -2.0 747,833 - +0.2 747,861 - +0.1 747,958 + AO353_03495 0.30 -1.1 747,959 - AO353_03495 0.30 +1.7 747,981 + AO353_03495 0.36 +0.9 748,038 + AO353_03495 0.51 +1.2 748,038 + AO353_03495 0.51 -2.2 748,038 + AO353_03495 0.51 -0.4 748,038 + AO353_03495 0.51 +0.5 748,038 + AO353_03495 0.51 +0.9 748,039 - AO353_03495 0.51 +0.4 748,039 - AO353_03495 0.51 -1.9 748,039 - AO353_03495 0.51 +1.7 748,039 - AO353_03495 0.51 -1.3 748,039 - AO353_03495 0.51 -1.3 748,039 - AO353_03495 0.51 -1.0 748,039 - AO353_03495 0.51 -0.5 748,192 - -2.5 748,246 + -1.4 748,246 + +1.3 748,246 + -1.2 748,246 + -1.1 748,246 + +0.4 748,247 - -1.8 748,247 - -1.9 748,247 - -0.8 748,247 - +0.2 748,252 + -1.4 748,252 + -0.3 748,252 + +0.5 748,252 + +0.5 748,252 + -1.0 748,252 + -1.6 748,253 - -1.7 748,479 + -3.6 748,479 + +0.7 748,480 - +1.3 748,480 - +0.5 748,480 - -2.6 748,480 - -3.1 748,480 - -0.3 748,480 - +1.6 748,480 - +0.5 748,480 - -1.4 748,494 + +2.1 748,494 + +0.9 748,494 + -1.3 748,495 - -2.2 748,497 + -1.1 748,497 + +0.2 748,497 + -1.2 748,497 + -1.1 748,497 + -0.7 748,497 + -1.3 748,497 + +0.3 748,498 - -1.9 748,498 - +0.9 748,498 - -2.3 748,498 - -1.6 748,498 - -0.6 748,498 - -2.3 748,498 - -2.5 748,508 + -1.8 748,554 + AO353_03500 0.11 +0.9 748,554 + AO353_03500 0.11 +0.7 748,554 + AO353_03500 0.11 +2.6 748,555 - AO353_03500 0.11 -1.4 748,555 - AO353_03500 0.11 -1.0 748,563 + AO353_03500 0.11 -0.5 748,563 + AO353_03500 0.11 -1.0 748,564 - AO353_03500 0.11 -0.5 749,085 + AO353_03500 0.30 -1.8 749,085 + AO353_03500 0.30 +0.5 749,085 + AO353_03500 0.30 +0.4 749,086 - AO353_03500 0.30 -2.6 749,086 - AO353_03500 0.30 -0.1 749,086 - AO353_03500 0.30 +1.4 749,086 - AO353_03500 0.30 -0.5 749,201 + AO353_03500 0.34 +1.6 749,202 - AO353_03500 0.34 -2.0 749,202 - AO353_03500 0.34 +1.6 749,202 - AO353_03500 0.34 -1.4 749,249 - AO353_03500 0.36 +0.6 749,271 + AO353_03500 0.36 -1.8 749,271 + AO353_03500 0.36 -2.4 749,271 + AO353_03500 0.36 +0.3 749,271 + AO353_03500 0.36 -2.4 749,271 + AO353_03500 0.36 -0.1 749,272 - AO353_03500 0.36 -2.2 749,272 - AO353_03500 0.36 -0.2 749,272 - AO353_03500 0.36 -1.0 749,272 - AO353_03500 0.36 -1.7 749,272 - AO353_03500 0.36 -1.1 749,272 - +1.5 749,272 - AO353_03500 0.36 -2.3 749,272 - AO353_03500 0.36 -1.0 749,280 + AO353_03500 0.37 -1.3 749,291 + AO353_03500 0.37 +1.3 749,695 - AO353_03500 0.51 -1.1 749,952 + AO353_03500 0.60 -1.7 750,180 + AO353_03500 0.68 -2.3 750,180 + AO353_03500 0.68 -0.5 750,180 + AO353_03500 0.68 +0.5 750,258 + AO353_03500 0.71 +0.2 750,258 + AO353_03500 0.71 -0.1 750,258 + AO353_03500 0.71 -2.9 750,258 + AO353_03500 0.71 -2.0 750,258 + AO353_03500 0.71 +0.7 750,258 + AO353_03500 0.71 -0.4 750,258 + AO353_03500 0.71 +0.1 750,258 + AO353_03500 0.71 +1.0 750,258 + AO353_03500 0.71 -0.2 750,258 + AO353_03500 0.71 +0.2 750,258 + AO353_03500 0.71 -0.4 750,258 + AO353_03500 0.71 -0.4 750,258 + AO353_03500 0.71 -0.8 750,258 + AO353_03500 0.71 -1.2 750,259 - AO353_03500 0.71 -1.5 750,259 - AO353_03500 0.71 -0.8 750,259 - AO353_03500 0.71 -1.5 750,259 - AO353_03500 0.71 -1.1 750,513 + AO353_03500 0.80 -1.3 750,513 + AO353_03500 0.80 -0.9 750,513 + AO353_03500 0.80 -1.7 750,513 + AO353_03500 0.80 +1.2 750,513 + AO353_03500 0.80 -0.1 750,513 + AO353_03500 0.80 -0.2 750,513 + AO353_03500 0.80 -0.8 750,514 - AO353_03500 0.80 +1.5 750,514 - AO353_03500 0.80 +0.5 750,514 - AO353_03500 0.80 -1.8 750,514 - AO353_03500 0.80 -0.5 750,514 - AO353_03500 0.80 +1.3 750,514 - AO353_03500 0.80 +0.2 750,514 - AO353_03500 0.80 +0.2 750,579 + AO353_03500 0.82 -2.0 750,579 + AO353_03500 0.82 +0.9 750,579 + AO353_03500 0.82 +0.5 750,579 + AO353_03500 0.82 -1.3 750,579 + AO353_03500 0.82 -0.0 750,580 - AO353_03500 0.82 -0.1 750,580 - AO353_03500 0.82 -0.1 750,580 - AO353_03500 0.82 -0.8 750,580 - AO353_03500 0.82 -0.8 750,607 - AO353_03500 0.83 -1.4 750,618 + AO353_03500 0.83 +2.0 750,618 + AO353_03500 0.83 +0.5 750,618 + AO353_03500 0.83 -0.5 750,619 - AO353_03500 0.84 +2.3 750,952 - +0.9 750,973 - -1.2 751,002 + -2.3 751,002 + -1.8 751,002 + +0.7 751,003 - +0.7 751,080 + +0.2 751,080 + -0.1 751,080 + -2.0 751,080 + -2.2 751,080 + -1.1 751,081 - -0.1 751,081 - -0.3 751,091 + -0.7 751,091 + -0.1 751,091 + +1.4 751,091 + -0.5 751,091 + +0.4 751,091 + -0.0 751,091 + -2.7 751,091 + +0.6 751,091 + +0.9 751,091 + +0.0 751,091 + +2.5 751,091 + +0.5 751,091 + +0.5 751,092 - -1.4 751,092 - -0.7 751,092 - +0.4 751,092 - -0.7 751,092 - -1.9 751,092 - -0.2 751,092 - -1.8 751,092 - +1.0 751,092 - +0.6 751,146 + +0.4 751,146 + +0.8 751,147 - -0.8 751,249 + -1.5 751,249 + -1.4 751,249 + +1.3 751,249 + -2.0 751,249 + -1.3 751,249 + -0.5 751,250 - +0.3 751,250 - -0.2 751,250 - +0.3 751,250 - -1.1 751,250 - +1.1 751,250 - -0.5 751,251 + +0.7 751,252 - +1.5 751,252 - -1.7 751,281 + -0.3 751,638 - AO353_03505 0.26 -1.9 751,703 + AO353_03505 0.31 +1.2 751,704 - AO353_03505 0.31 -1.0 751,704 - AO353_03505 0.31 +0.1 751,704 - AO353_03505 0.31 -0.1 751,704 - AO353_03505 0.31 -2.2 751,771 + AO353_03505 0.36 +1.7 751,771 + AO353_03505 0.36 +0.5 751,832 + AO353_03505 0.41 -0.9 751,832 + AO353_03505 0.41 -1.1 751,833 - AO353_03505 0.41 +0.2 752,084 + AO353_03505 0.59 +0.6 752,084 + AO353_03505 0.59 -3.1 752,085 - AO353_03505 0.59 -1.9 752,085 - AO353_03505 0.59 +1.0 752,085 - AO353_03505 0.59 +0.6 752,085 - AO353_03505 0.59 -1.4
Or see this region's nucleotide sequence