Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01005 and AO353_01010 are separated by 309 nucleotides AO353_01010 and AO353_01015 are separated by 52 nucleotides AO353_01015 and AO353_01020 overlap by 2 nucleotides AO353_01020 and AO353_01025 are separated by 83 nucleotides AO353_01025 and AO353_01030 are separated by 609 nucleotides
AO353_01005: AO353_01005 - hypothetical protein, at 223,780 to 224,115
_01005
AO353_01010: AO353_01010 - cell envelope protein SmpA, at 224,425 to 224,787
_01010
AO353_01015: AO353_01015 - hypothetical protein, at 224,840 to 225,019
_01015
AO353_01020: AO353_01020 - hypothetical protein, at 225,018 to 225,404
_01020
AO353_01025: AO353_01025 - hypothetical protein, at 225,488 to 225,685
_01025
AO353_01030: AO353_01030 - chemotaxis protein, at 226,295 to 227,860
_01030
Position (kb) 225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 224.101 kb on + strand at 224.101 kb on + strand at 224.101 kb on + strand at 224.102 kb on - strand at 224.102 kb on - strand at 224.115 kb on + strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.131 kb on + strand at 224.131 kb on + strand at 224.147 kb on + strand at 224.147 kb on + strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.162 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.176 kb on - strand at 224.176 kb on - strand at 224.179 kb on + strand at 224.179 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.200 kb on + strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.216 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.373 kb on + strand at 224.373 kb on + strand at 224.374 kb on - strand at 224.439 kb on - strand at 224.525 kb on + strand, within AO353_01010 at 224.526 kb on - strand, within AO353_01010 at 224.526 kb on - strand, within AO353_01010 at 224.576 kb on + strand, within AO353_01010 at 224.576 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.700 kb on + strand, within AO353_01010 at 224.700 kb on + strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.785 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.893 kb on + strand, within AO353_01015 at 224.894 kb on - strand, within AO353_01015 at 224.981 kb on + strand, within AO353_01015 at 224.982 kb on - strand, within AO353_01015 at 225.023 kb on + strand at 225.024 kb on - strand at 225.029 kb on - strand at 225.037 kb on + strand at 225.038 kb on - strand at 225.069 kb on + strand, within AO353_01020 at 225.069 kb on + strand, within AO353_01020 at 225.069 kb on + strand, within AO353_01020 at 225.119 kb on + strand, within AO353_01020 at 225.120 kb on - strand, within AO353_01020 at 225.120 kb on - strand, within AO353_01020 at 225.160 kb on + strand, within AO353_01020 at 225.161 kb on - strand, within AO353_01020 at 225.342 kb on + strand, within AO353_01020 at 225.342 kb on + strand, within AO353_01020 at 225.342 kb on + strand, within AO353_01020 at 225.343 kb on - strand, within AO353_01020 at 225.686 kb on - strand at 225.745 kb on + strand at 225.751 kb on - strand at 225.751 kb on - strand at 225.767 kb on + strand at 225.868 kb on - strand at 225.900 kb on + strand at 225.946 kb on + strand at 225.946 kb on + strand at 225.946 kb on + strand at 225.946 kb on + strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.947 kb on - strand at 225.966 kb on + strand at 225.967 kb on - strand at 225.967 kb on - strand at 225.973 kb on + strand at 226.005 kb on + strand at 226.006 kb on - strand at 226.006 kb on - strand at 226.006 kb on - strand at 226.006 kb on - strand at 226.139 kb on + strand at 226.157 kb on + strand at 226.157 kb on + strand at 226.161 kb on + strand at 226.161 kb on + strand at 226.162 kb on - strand at 226.185 kb on + strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.218 kb on - strand at 226.238 kb on + strand at 226.238 kb on + strand at 226.238 kb on + strand at 226.324 kb on - strand at 226.324 kb on - strand at 226.342 kb on + strand at 226.342 kb on + strand at 226.343 kb on - strand at 226.343 kb on - strand at 226.343 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 224,101 + -2.7 224,101 + -1.5 224,101 + +1.4 224,102 - -2.4 224,102 - -0.1 224,115 + +0.4 224,116 - +0.1 224,116 - +0.1 224,116 - -1.6 224,116 - +0.9 224,116 - -0.9 224,116 - -0.9 224,116 - -0.5 224,116 - -1.2 224,131 + -1.2 224,131 + +1.3 224,147 + +0.1 224,147 + +0.2 224,148 - +1.3 224,148 - +0.5 224,148 - +1.5 224,148 - -0.9 224,162 + -0.1 224,175 + -0.0 224,175 + +0.2 224,175 + -2.1 224,175 + +1.6 224,175 + +1.3 224,175 + -1.5 224,176 - +0.6 224,176 - -0.5 224,179 + +0.3 224,179 + +1.2 224,189 + +0.7 224,189 + -1.8 224,189 + +1.5 224,189 + -0.1 224,189 + -1.1 224,189 + +1.0 224,189 + -1.4 224,190 - -0.9 224,190 - -1.3 224,190 - -1.6 224,190 - -0.3 224,190 - +1.3 224,200 + -0.9 224,201 - -0.4 224,201 - +0.6 224,216 - +2.4 224,339 - -2.1 224,339 - +1.3 224,339 - -1.1 224,339 - -2.1 224,373 + -1.2 224,373 + +0.3 224,374 - -1.3 224,439 - -0.1 224,525 + AO353_01010 0.28 -0.7 224,526 - AO353_01010 0.28 -0.3 224,526 - AO353_01010 0.28 +0.5 224,576 + AO353_01010 0.42 -0.8 224,576 + AO353_01010 0.42 -0.9 224,620 + AO353_01010 0.54 -0.5 224,620 + AO353_01010 0.54 +1.4 224,620 + AO353_01010 0.54 +2.3 224,620 + AO353_01010 0.54 +0.1 224,621 - AO353_01010 0.54 +1.8 224,621 - AO353_01010 0.54 -0.3 224,621 - AO353_01010 0.54 +0.4 224,621 - AO353_01010 0.54 -2.1 224,621 - AO353_01010 0.54 -3.4 224,621 - AO353_01010 0.54 -0.4 224,621 - AO353_01010 0.54 +0.8 224,691 + AO353_01010 0.73 -0.2 224,691 + AO353_01010 0.73 +0.9 224,691 + AO353_01010 0.73 -0.1 224,691 + AO353_01010 0.73 +0.4 224,691 + AO353_01010 0.73 +1.5 224,700 + AO353_01010 0.76 +0.2 224,700 + AO353_01010 0.76 +0.5 224,701 - AO353_01010 0.76 +0.3 224,701 - AO353_01010 0.76 -1.1 224,701 - AO353_01010 0.76 +2.1 224,785 + +0.2 224,790 + -1.4 224,790 + +1.2 224,790 + +0.0 224,790 + -1.7 224,790 + -2.3 224,790 + +0.9 224,791 - -0.3 224,791 - +0.8 224,791 - -0.9 224,791 - +0.3 224,791 - -1.2 224,818 + -0.4 224,818 + -2.3 224,818 + +1.9 224,818 + +1.3 224,818 + +0.7 224,818 + -1.0 224,818 + -0.1 224,818 + +3.3 224,818 + +0.6 224,818 + -0.7 224,818 + -2.7 224,818 + +1.8 224,818 + -0.1 224,818 + -0.1 224,819 - -2.4 224,819 - +0.3 224,819 - -1.7 224,819 - -0.3 224,819 - -0.9 224,848 - -0.7 224,848 - +2.2 224,848 - -0.9 224,848 - +0.0 224,893 + AO353_01015 0.29 +1.3 224,894 - AO353_01015 0.30 -0.4 224,981 + AO353_01015 0.78 +0.5 224,982 - AO353_01015 0.79 -0.6 225,023 + +0.1 225,024 - -0.1 225,029 - +0.3 225,037 + +1.0 225,038 - -1.8 225,069 + AO353_01020 0.13 -1.1 225,069 + AO353_01020 0.13 -0.4 225,069 + AO353_01020 0.13 +0.3 225,119 + AO353_01020 0.26 -2.4 225,120 - AO353_01020 0.26 -1.4 225,120 - AO353_01020 0.26 -0.2 225,160 + AO353_01020 0.37 +0.7 225,161 - AO353_01020 0.37 -1.3 225,342 + AO353_01020 0.84 -2.0 225,342 + AO353_01020 0.84 -0.9 225,342 + AO353_01020 0.84 -1.1 225,343 - AO353_01020 0.84 -1.0 225,686 - -1.1 225,745 + +0.6 225,751 - -0.7 225,751 - +0.5 225,767 + +0.0 225,868 - +0.1 225,900 + +0.3 225,946 + +0.7 225,946 + +1.7 225,946 + -2.0 225,946 + +1.5 225,947 - -1.5 225,947 - +0.6 225,947 - +0.1 225,947 - +0.6 225,947 - -1.3 225,947 - -1.1 225,947 - +0.6 225,947 - -0.1 225,966 + +0.3 225,967 - -1.6 225,967 - +0.6 225,973 + +0.7 226,005 + -0.9 226,006 - +0.3 226,006 - -0.3 226,006 - -2.7 226,006 - +1.6 226,139 + +0.1 226,157 + -1.4 226,157 + +0.7 226,161 + -1.3 226,161 + +1.4 226,162 - -0.1 226,185 + -0.7 226,186 - +0.8 226,186 - -1.2 226,186 - -0.9 226,218 - +0.2 226,238 + +1.4 226,238 + -2.1 226,238 + -0.1 226,324 - -0.3 226,324 - +3.0 226,342 + -2.0 226,342 + -2.3 226,343 - +0.7 226,343 - -1.5 226,343 - -0.9
Or see this region's nucleotide sequence