Experiment: Aluminum chloride 0.00005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_607 and Pf6N2E2_608 are separated by 132 nucleotides Pf6N2E2_608 and Pf6N2E2_609 are separated by 349 nucleotides
Pf6N2E2_607 - hypothetical protein, at 685,441 to 690,153
_607
Pf6N2E2_608 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 690,286 to 691,005
_608
Pf6N2E2_609 - L-arabonate dehydratase (EC 4.2.1.25) <small>(from data)</small>, at 691,355 to 693,091
_609
Position (kb) 690
691
692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.336 kb on + strand, within Pf6N2E2_607 at 689.337 kb on - strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.522 kb on + strand, within Pf6N2E2_607 at 689.528 kb on + strand, within Pf6N2E2_607 at 689.528 kb on + strand, within Pf6N2E2_607 at 689.529 kb on - strand, within Pf6N2E2_607 at 689.638 kb on - strand, within Pf6N2E2_607 at 690.197 kb on + strand at 690.197 kb on + strand at 690.224 kb on + strand at 690.224 kb on + strand at 690.225 kb on - strand at 690.225 kb on - strand at 690.226 kb on + strand at 690.226 kb on + strand at 690.226 kb on + strand at 690.227 kb on - strand at 690.227 kb on - strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.228 kb on + strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.229 kb on - strand at 690.280 kb on + strand at 690.280 kb on + strand at 690.281 kb on - strand at 690.281 kb on - strand at 690.285 kb on - strand at 690.285 kb on - strand at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.759 kb on + strand, within Pf6N2E2_608 at 690.760 kb on - strand, within Pf6N2E2_608 at 690.760 kb on - strand, within Pf6N2E2_608 at 690.809 kb on + strand, within Pf6N2E2_608 at 690.809 kb on + strand, within Pf6N2E2_608 at 690.810 kb on - strand, within Pf6N2E2_608 at 690.872 kb on + strand, within Pf6N2E2_608 at 690.873 kb on - strand, within Pf6N2E2_608 at 690.873 kb on - strand, within Pf6N2E2_608 at 690.907 kb on - strand, within Pf6N2E2_608 at 690.998 kb on + strand at 691.047 kb on + strand at 691.048 kb on - strand at 691.119 kb on - strand at 691.197 kb on + strand at 691.198 kb on - strand at 691.290 kb on + strand at 691.291 kb on - strand at 691.291 kb on - strand at 691.374 kb on - strand at 691.446 kb on + strand at 691.446 kb on + strand at 691.446 kb on + strand at 691.446 kb on + strand at 691.447 kb on - strand at 691.685 kb on - strand, within Pf6N2E2_609 at 691.833 kb on + strand, within Pf6N2E2_609 at 691.834 kb on - strand, within Pf6N2E2_609 at 691.834 kb on - strand, within Pf6N2E2_609 at 691.951 kb on + strand, within Pf6N2E2_609 at 691.951 kb on + strand, within Pf6N2E2_609
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 0.00005 M remove 689,336 + Pf6N2E2_607 0.83 +0.1 689,336 + Pf6N2E2_607 0.83 +0.9 689,336 + Pf6N2E2_607 0.83 -1.1 689,337 - Pf6N2E2_607 0.83 +0.7 689,522 + Pf6N2E2_607 0.87 -0.8 689,522 + Pf6N2E2_607 0.87 +0.4 689,522 + Pf6N2E2_607 0.87 -0.1 689,522 + Pf6N2E2_607 0.87 +0.9 689,528 + Pf6N2E2_607 0.87 +0.7 689,528 + Pf6N2E2_607 0.87 +0.8 689,529 - Pf6N2E2_607 0.87 -0.7 689,638 - Pf6N2E2_607 0.89 -0.3 690,197 + -0.7 690,197 + +0.7 690,224 + -0.4 690,224 + -1.2 690,225 - +0.1 690,225 - -0.5 690,226 + +0.3 690,226 + +0.1 690,226 + -0.2 690,227 - +0.0 690,227 - +0.6 690,228 + +0.8 690,228 + +1.0 690,228 + +0.5 690,228 + +0.7 690,228 + +0.3 690,228 + -0.6 690,228 + -0.6 690,228 + +0.2 690,228 + +2.3 690,228 + -0.9 690,228 + +0.5 690,228 + -0.5 690,229 - -0.4 690,229 - +0.7 690,229 - -0.2 690,229 - +0.0 690,229 - -1.7 690,229 - +0.7 690,229 - -0.9 690,229 - +1.3 690,229 - -1.2 690,280 + -0.6 690,280 + +1.6 690,281 - +0.7 690,281 - -0.1 690,285 - +0.9 690,285 - -0.4 690,759 + Pf6N2E2_608 0.66 -3.0 690,759 + Pf6N2E2_608 0.66 +0.7 690,759 + Pf6N2E2_608 0.66 +0.0 690,759 + Pf6N2E2_608 0.66 -0.2 690,759 + Pf6N2E2_608 0.66 -0.5 690,759 + Pf6N2E2_608 0.66 -0.4 690,760 - Pf6N2E2_608 0.66 +0.3 690,760 - Pf6N2E2_608 0.66 -1.2 690,809 + Pf6N2E2_608 0.73 -1.7 690,809 + Pf6N2E2_608 0.73 -1.4 690,810 - Pf6N2E2_608 0.73 -0.9 690,872 + Pf6N2E2_608 0.81 +1.7 690,873 - Pf6N2E2_608 0.82 +0.3 690,873 - Pf6N2E2_608 0.82 -0.5 690,907 - Pf6N2E2_608 0.86 -1.7 690,998 + -1.8 691,047 + -0.4 691,048 - -1.1 691,119 - -0.1 691,197 + +0.3 691,198 - -0.1 691,290 + -0.7 691,291 - -0.0 691,291 - +0.3 691,374 - +1.6 691,446 + +0.4 691,446 + -0.3 691,446 + +0.3 691,446 + +1.1 691,447 - +2.3 691,685 - Pf6N2E2_609 0.19 +0.9 691,833 + Pf6N2E2_609 0.28 +0.1 691,834 - Pf6N2E2_609 0.28 +0.8 691,834 - Pf6N2E2_609 0.28 -0.0 691,951 + Pf6N2E2_609 0.34 -0.2 691,951 + Pf6N2E2_609 0.34 +0.3
Or see this region's nucleotide sequence