Experiment: NAG carbon and (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18155 and PFLU_RS18160 are separated by 5 nucleotides PFLU_RS18160 and PFLU_RS18165 overlap by 11 nucleotides
PFLU_RS18155: PFLU_RS18155 - glycerol kinase, at 4,120,155 to 4,121,630
_RS18155
PFLU_RS18160: PFLU_RS18160 - transketolase, at 4,121,636 to 4,122,568
_RS18160
PFLU_RS18165: PFLU_RS18165 - transketolase, at 4,122,558 to 4,123,394
_RS18165
Position (kb) 4120
4121
4122 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4119.391 kb on + strand at 4119.575 kb on + strand at 4119.575 kb on + strand at 4119.759 kb on + strand at 4120.126 kb on + strand at 4120.149 kb on + strand at 4120.150 kb on - strand at 4120.150 kb on - strand at 4120.150 kb on - strand at 4120.195 kb on + strand at 4120.612 kb on + strand, within PFLU_RS18155 at 4120.612 kb on + strand, within PFLU_RS18155 at 4120.882 kb on + strand, within PFLU_RS18155 at 4121.086 kb on + strand, within PFLU_RS18155 at 4121.086 kb on + strand, within PFLU_RS18155 at 4121.346 kb on + strand, within PFLU_RS18155 at 4121.346 kb on + strand, within PFLU_RS18155 at 4121.346 kb on + strand, within PFLU_RS18155 at 4121.347 kb on - strand, within PFLU_RS18155 at 4121.347 kb on - strand, within PFLU_RS18155 at 4121.347 kb on - strand, within PFLU_RS18155 at 4121.347 kb on - strand, within PFLU_RS18155 at 4121.464 kb on + strand, within PFLU_RS18155 at 4121.465 kb on - strand, within PFLU_RS18155 at 4121.598 kb on + strand at 4121.598 kb on + strand at 4121.599 kb on - strand at 4121.599 kb on - strand at 4121.622 kb on - strand at 4121.622 kb on - strand at 4121.683 kb on + strand at 4121.683 kb on + strand at 4121.683 kb on + strand at 4121.683 kb on + strand at 4121.683 kb on + strand at 4121.684 kb on - strand at 4121.684 kb on - strand at 4121.684 kb on - strand at 4121.725 kb on - strand at 4121.818 kb on + strand, within PFLU_RS18160 at 4121.818 kb on + strand, within PFLU_RS18160 at 4121.818 kb on + strand, within PFLU_RS18160 at 4121.818 kb on + strand, within PFLU_RS18160 at 4121.819 kb on - strand, within PFLU_RS18160 at 4121.819 kb on - strand, within PFLU_RS18160 at 4121.819 kb on - strand, within PFLU_RS18160 at 4121.819 kb on - strand, within PFLU_RS18160 at 4121.819 kb on - strand, within PFLU_RS18160 at 4121.840 kb on - strand, within PFLU_RS18160 at 4121.867 kb on - strand, within PFLU_RS18160 at 4121.867 kb on - strand, within PFLU_RS18160 at 4122.056 kb on - strand, within PFLU_RS18160 at 4122.093 kb on + strand, within PFLU_RS18160 at 4122.093 kb on + strand, within PFLU_RS18160 at 4122.093 kb on + strand, within PFLU_RS18160 at 4122.093 kb on + strand, within PFLU_RS18160 at 4122.094 kb on - strand, within PFLU_RS18160 at 4122.094 kb on - strand, within PFLU_RS18160 at 4122.094 kb on - strand, within PFLU_RS18160 at 4122.094 kb on - strand, within PFLU_RS18160 at 4122.094 kb on - strand, within PFLU_RS18160 at 4122.120 kb on + strand, within PFLU_RS18160 at 4122.120 kb on + strand, within PFLU_RS18160 at 4122.121 kb on - strand, within PFLU_RS18160 at 4122.121 kb on - strand, within PFLU_RS18160 at 4122.121 kb on - strand, within PFLU_RS18160 at 4122.199 kb on + strand, within PFLU_RS18160 at 4122.200 kb on - strand, within PFLU_RS18160 at 4122.200 kb on - strand, within PFLU_RS18160 at 4122.200 kb on - strand, within PFLU_RS18160 at 4122.237 kb on + strand, within PFLU_RS18160 at 4122.285 kb on + strand, within PFLU_RS18160 at 4122.286 kb on - strand, within PFLU_RS18160
Per-strain Table
Position Strand Gene LocusTag Fraction NAG carbon and (N) remove 4,119,391 + -0.6 4,119,575 + -0.3 4,119,575 + -0.7 4,119,759 + -0.8 4,120,126 + -2.7 4,120,149 + -1.8 4,120,150 - -0.6 4,120,150 - -2.3 4,120,150 - +1.4 4,120,195 + +0.9 4,120,612 + PFLU_RS18155 0.31 -2.0 4,120,612 + PFLU_RS18155 0.31 -0.5 4,120,882 + PFLU_RS18155 0.49 +0.5 4,121,086 + PFLU_RS18155 0.63 +4.2 4,121,086 + PFLU_RS18155 0.63 +2.6 4,121,346 + PFLU_RS18155 0.81 +0.0 4,121,346 + PFLU_RS18155 0.81 +0.1 4,121,346 + PFLU_RS18155 0.81 +1.5 4,121,347 - PFLU_RS18155 0.81 -1.2 4,121,347 - PFLU_RS18155 0.81 -1.3 4,121,347 - PFLU_RS18155 0.81 +0.8 4,121,347 - PFLU_RS18155 0.81 +1.8 4,121,464 + PFLU_RS18155 0.89 -0.6 4,121,465 - PFLU_RS18155 0.89 -1.6 4,121,598 + +0.2 4,121,598 + -1.1 4,121,599 - -2.1 4,121,599 - +0.4 4,121,622 - +0.7 4,121,622 - -0.6 4,121,683 + +1.4 4,121,683 + -0.2 4,121,683 + +1.0 4,121,683 + -1.4 4,121,683 + +1.4 4,121,684 - -0.9 4,121,684 - -1.9 4,121,684 - -0.4 4,121,725 - -0.9 4,121,818 + PFLU_RS18160 0.20 -2.3 4,121,818 + PFLU_RS18160 0.20 -0.1 4,121,818 + PFLU_RS18160 0.20 +0.4 4,121,818 + PFLU_RS18160 0.20 +1.1 4,121,819 - PFLU_RS18160 0.20 -3.9 4,121,819 - PFLU_RS18160 0.20 -1.5 4,121,819 - PFLU_RS18160 0.20 -0.9 4,121,819 - PFLU_RS18160 0.20 -2.2 4,121,819 - PFLU_RS18160 0.20 +0.4 4,121,840 - PFLU_RS18160 0.22 -1.1 4,121,867 - PFLU_RS18160 0.25 -2.6 4,121,867 - PFLU_RS18160 0.25 -2.5 4,122,056 - PFLU_RS18160 0.45 -2.5 4,122,093 + PFLU_RS18160 0.49 -1.8 4,122,093 + PFLU_RS18160 0.49 -0.1 4,122,093 + PFLU_RS18160 0.49 +0.8 4,122,093 + PFLU_RS18160 0.49 -0.2 4,122,094 - PFLU_RS18160 0.49 -2.2 4,122,094 - PFLU_RS18160 0.49 -2.3 4,122,094 - PFLU_RS18160 0.49 -2.5 4,122,094 - PFLU_RS18160 0.49 -1.2 4,122,094 - PFLU_RS18160 0.49 -0.5 4,122,120 + PFLU_RS18160 0.52 -0.0 4,122,120 + PFLU_RS18160 0.52 +1.9 4,122,121 - PFLU_RS18160 0.52 -2.5 4,122,121 - PFLU_RS18160 0.52 -2.1 4,122,121 - PFLU_RS18160 0.52 -1.9 4,122,199 + PFLU_RS18160 0.60 +1.0 4,122,200 - PFLU_RS18160 0.60 -1.6 4,122,200 - PFLU_RS18160 0.60 -1.9 4,122,200 - PFLU_RS18160 0.60 +0.8 4,122,237 + PFLU_RS18160 0.64 -1.1 4,122,285 + PFLU_RS18160 0.70 +0.7 4,122,286 - PFLU_RS18160 0.70 -3.1
Or see this region's nucleotide sequence