Experiment: NAG carbon and (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01620 and PFLU_RS01625 are separated by 9 nucleotides PFLU_RS01625 and PFLU_RS01630 are separated by 66 nucleotides PFLU_RS01630 and PFLU_RS01635 are separated by 3 nucleotides
PFLU_RS01620: PFLU_RS01620 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 362,169 to 362,906
_RS01620
PFLU_RS01625: PFLU_RS01625 - imidazole glycerol phosphate synthase subunit HisF, at 362,916 to 363,686
_RS01625
PFLU_RS01630: PFLU_RS01630 - ABC transporter substrate-binding protein, at 363,753 to 364,508
_RS01630
PFLU_RS01635: PFLU_RS01635 - serine protease, at 364,512 to 366,077
_RS01635
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 362.847 kb on + strand at 362.847 kb on + strand at 362.848 kb on - strand at 362.848 kb on - strand at 362.848 kb on - strand at 362.848 kb on - strand at 362.855 kb on + strand at 362.855 kb on + strand at 362.855 kb on + strand at 362.855 kb on + strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.884 kb on - strand at 362.895 kb on + strand at 362.895 kb on + strand at 362.896 kb on - strand at 362.896 kb on - strand at 362.896 kb on - strand at 362.896 kb on - strand at 363.033 kb on + strand, within PFLU_RS01625 at 363.059 kb on + strand, within PFLU_RS01625 at 363.110 kb on + strand, within PFLU_RS01625 at 363.110 kb on + strand, within PFLU_RS01625 at 363.111 kb on - strand, within PFLU_RS01625 at 363.140 kb on + strand, within PFLU_RS01625 at 363.140 kb on + strand, within PFLU_RS01625 at 363.377 kb on + strand, within PFLU_RS01625 at 363.611 kb on + strand at 363.612 kb on - strand at 363.630 kb on + strand at 363.630 kb on + strand at 363.630 kb on + strand at 363.630 kb on + strand at 363.631 kb on - strand at 363.631 kb on - strand at 363.631 kb on - strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.654 kb on + strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.655 kb on - strand at 363.671 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.785 kb on + strand at 363.786 kb on - strand at 363.786 kb on - strand at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.870 kb on + strand, within PFLU_RS01630 at 363.972 kb on + strand, within PFLU_RS01630 at 363.973 kb on - strand, within PFLU_RS01630 at 363.973 kb on - strand, within PFLU_RS01630 at 364.008 kb on + strand, within PFLU_RS01630 at 364.009 kb on - strand, within PFLU_RS01630 at 364.009 kb on - strand, within PFLU_RS01630 at 364.136 kb on + strand, within PFLU_RS01630 at 364.136 kb on + strand, within PFLU_RS01630 at 364.136 kb on + strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.137 kb on - strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.191 kb on + strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.192 kb on - strand, within PFLU_RS01630 at 364.193 kb on + strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.194 kb on - strand, within PFLU_RS01630 at 364.235 kb on + strand, within PFLU_RS01630 at 364.329 kb on + strand, within PFLU_RS01630 at 364.379 kb on + strand, within PFLU_RS01630 at 364.380 kb on - strand, within PFLU_RS01630 at 364.380 kb on - strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.395 kb on + strand, within PFLU_RS01630 at 364.500 kb on + strand at 364.501 kb on - strand at 364.506 kb on + strand at 364.507 kb on - strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.573 kb on + strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.574 kb on - strand at 364.577 kb on + strand at 364.577 kb on + strand at 364.577 kb on + strand at 364.578 kb on - strand at 364.578 kb on - strand at 364.610 kb on + strand at 364.610 kb on + strand at 364.611 kb on - strand at 364.611 kb on - strand at 364.730 kb on - strand, within PFLU_RS01635 at 364.777 kb on + strand, within PFLU_RS01635 at 364.777 kb on + strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.778 kb on - strand, within PFLU_RS01635 at 364.783 kb on + strand, within PFLU_RS01635 at 364.783 kb on + strand, within PFLU_RS01635 at 364.784 kb on - strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.793 kb on + strand, within PFLU_RS01635 at 364.794 kb on - strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.825 kb on + strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 364.826 kb on - strand, within PFLU_RS01635 at 365.045 kb on - strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.089 kb on + strand, within PFLU_RS01635 at 365.096 kb on - strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.111 kb on + strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.112 kb on - strand, within PFLU_RS01635 at 365.115 kb on - strand, within PFLU_RS01635 at 365.115 kb on - strand, within PFLU_RS01635 at 365.115 kb on - strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.176 kb on + strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.177 kb on - strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.302 kb on + strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.303 kb on - strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.306 kb on + strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.307 kb on - strand, within PFLU_RS01635 at 365.373 kb on - strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.396 kb on + strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.397 kb on - strand, within PFLU_RS01635 at 365.420 kb on + strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.421 kb on - strand, within PFLU_RS01635 at 365.493 kb on + strand, within PFLU_RS01635 at 365.493 kb on + strand, within PFLU_RS01635
Per-strain Table
Position Strand Gene LocusTag Fraction NAG carbon and (N) remove 362,847 + -1.1 362,847 + -3.1 362,848 - -0.4 362,848 - +0.9 362,848 - -3.0 362,848 - -1.3 362,855 + -1.8 362,855 + -1.0 362,855 + -0.1 362,855 + -2.2 362,884 - -2.1 362,884 - -0.3 362,884 - -2.0 362,884 - -2.5 362,884 - -1.7 362,884 - -2.8 362,895 + -0.7 362,895 + +1.5 362,896 - -1.1 362,896 - -2.1 362,896 - -2.3 362,896 - -2.0 363,033 + PFLU_RS01625 0.15 -0.3 363,059 + PFLU_RS01625 0.19 -0.5 363,110 + PFLU_RS01625 0.25 -0.5 363,110 + PFLU_RS01625 0.25 -2.1 363,111 - PFLU_RS01625 0.25 +0.5 363,140 + PFLU_RS01625 0.29 -2.2 363,140 + PFLU_RS01625 0.29 -0.5 363,377 + PFLU_RS01625 0.60 +0.5 363,611 + -2.7 363,612 - -3.4 363,630 + -2.1 363,630 + -0.8 363,630 + -0.5 363,630 + -0.3 363,631 - -1.5 363,631 - -1.1 363,631 - -2.2 363,654 + -1.2 363,654 + +0.9 363,654 + +0.2 363,654 + -2.7 363,654 + -1.9 363,654 + -0.7 363,654 + -1.2 363,654 + -2.1 363,654 + -2.5 363,654 + -1.9 363,655 - -2.5 363,655 - -2.1 363,655 - -2.1 363,655 - -1.4 363,671 + -1.4 363,785 + -0.9 363,785 + -2.7 363,785 + +0.3 363,785 + +1.0 363,785 + -1.0 363,786 - +2.3 363,786 - +0.9 363,870 + PFLU_RS01630 0.15 -0.7 363,870 + PFLU_RS01630 0.15 -0.3 363,870 + PFLU_RS01630 0.15 -2.9 363,870 + PFLU_RS01630 0.15 -0.5 363,972 + PFLU_RS01630 0.29 -1.6 363,973 - PFLU_RS01630 0.29 -0.3 363,973 - PFLU_RS01630 0.29 +0.0 364,008 + PFLU_RS01630 0.34 -1.1 364,009 - PFLU_RS01630 0.34 -1.2 364,009 - PFLU_RS01630 0.34 -0.1 364,136 + PFLU_RS01630 0.51 -0.7 364,136 + PFLU_RS01630 0.51 +0.9 364,136 + PFLU_RS01630 0.51 -0.8 364,137 - PFLU_RS01630 0.51 -0.8 364,137 - PFLU_RS01630 0.51 +0.1 364,137 - PFLU_RS01630 0.51 +0.2 364,137 - PFLU_RS01630 0.51 -0.1 364,191 + PFLU_RS01630 0.58 -2.3 364,191 + PFLU_RS01630 0.58 -0.4 364,191 + PFLU_RS01630 0.58 -0.8 364,192 - PFLU_RS01630 0.58 -0.4 364,192 - PFLU_RS01630 0.58 -0.2 364,192 - PFLU_RS01630 0.58 +1.2 364,192 - PFLU_RS01630 0.58 +0.2 364,192 - PFLU_RS01630 0.58 -1.6 364,193 + PFLU_RS01630 0.58 -2.1 364,194 - PFLU_RS01630 0.58 -0.7 364,194 - PFLU_RS01630 0.58 -3.0 364,194 - PFLU_RS01630 0.58 +1.9 364,194 - PFLU_RS01630 0.58 +1.6 364,194 - PFLU_RS01630 0.58 +1.7 364,194 - PFLU_RS01630 0.58 -0.3 364,194 - PFLU_RS01630 0.58 -1.3 364,235 + PFLU_RS01630 0.64 +0.0 364,329 + PFLU_RS01630 0.76 -0.5 364,379 + PFLU_RS01630 0.83 +0.1 364,380 - PFLU_RS01630 0.83 -0.5 364,380 - PFLU_RS01630 0.83 +0.7 364,395 + PFLU_RS01630 0.85 +0.3 364,395 + PFLU_RS01630 0.85 -1.2 364,395 + PFLU_RS01630 0.85 +0.2 364,395 + PFLU_RS01630 0.85 -2.4 364,500 + -0.2 364,501 - +1.3 364,506 + -1.3 364,507 - -1.3 364,573 + +1.6 364,573 + +0.8 364,573 + -1.3 364,573 + +0.8 364,574 - +0.2 364,574 - +3.2 364,574 - +1.5 364,574 - +0.5 364,574 - +0.8 364,574 - +1.2 364,577 + +0.3 364,577 + +1.0 364,577 + +1.1 364,578 - +1.2 364,578 - +0.7 364,610 + +1.2 364,610 + +0.4 364,611 - +2.5 364,611 - +0.4 364,730 - PFLU_RS01635 0.14 +2.2 364,777 + PFLU_RS01635 0.17 +1.9 364,777 + PFLU_RS01635 0.17 +2.3 364,778 - PFLU_RS01635 0.17 +1.1 364,778 - PFLU_RS01635 0.17 +0.5 364,783 + PFLU_RS01635 0.17 +1.4 364,783 + PFLU_RS01635 0.17 +2.7 364,784 - PFLU_RS01635 0.17 +1.1 364,793 + PFLU_RS01635 0.18 +2.9 364,793 + PFLU_RS01635 0.18 +1.1 364,793 + PFLU_RS01635 0.18 +2.6 364,793 + PFLU_RS01635 0.18 -1.1 364,794 - PFLU_RS01635 0.18 -0.7 364,825 + PFLU_RS01635 0.20 -1.3 364,825 + PFLU_RS01635 0.20 -1.4 364,825 + PFLU_RS01635 0.20 +1.4 364,825 + PFLU_RS01635 0.20 -3.2 364,825 + PFLU_RS01635 0.20 -0.9 364,826 - PFLU_RS01635 0.20 +1.2 364,826 - PFLU_RS01635 0.20 -0.7 364,826 - PFLU_RS01635 0.20 +2.9 364,826 - PFLU_RS01635 0.20 +1.0 364,826 - PFLU_RS01635 0.20 -1.1 365,045 - PFLU_RS01635 0.34 +0.2 365,089 + PFLU_RS01635 0.37 +1.2 365,089 + PFLU_RS01635 0.37 -0.8 365,089 + PFLU_RS01635 0.37 -1.7 365,089 + PFLU_RS01635 0.37 -0.7 365,089 + PFLU_RS01635 0.37 -0.3 365,096 - PFLU_RS01635 0.37 +0.6 365,111 + PFLU_RS01635 0.38 -2.9 365,111 + PFLU_RS01635 0.38 +2.2 365,111 + PFLU_RS01635 0.38 +1.4 365,111 + PFLU_RS01635 0.38 +1.7 365,112 - PFLU_RS01635 0.38 +0.1 365,112 - PFLU_RS01635 0.38 +0.4 365,112 - PFLU_RS01635 0.38 +1.3 365,112 - PFLU_RS01635 0.38 -0.5 365,112 - PFLU_RS01635 0.38 +0.4 365,112 - PFLU_RS01635 0.38 -1.0 365,115 - PFLU_RS01635 0.39 +0.3 365,115 - PFLU_RS01635 0.39 -0.2 365,115 - PFLU_RS01635 0.39 +3.2 365,176 + PFLU_RS01635 0.42 +0.0 365,176 + PFLU_RS01635 0.42 -0.9 365,176 + PFLU_RS01635 0.42 +1.4 365,176 + PFLU_RS01635 0.42 -1.5 365,176 + PFLU_RS01635 0.42 -1.3 365,177 - PFLU_RS01635 0.42 -1.1 365,177 - PFLU_RS01635 0.42 +0.3 365,177 - PFLU_RS01635 0.42 -0.5 365,177 - PFLU_RS01635 0.42 +0.2 365,302 + PFLU_RS01635 0.50 -2.0 365,302 + PFLU_RS01635 0.50 -0.5 365,302 + PFLU_RS01635 0.50 +0.7 365,302 + PFLU_RS01635 0.50 -1.2 365,302 + PFLU_RS01635 0.50 -0.7 365,302 + PFLU_RS01635 0.50 +1.2 365,302 + PFLU_RS01635 0.50 -0.1 365,302 + PFLU_RS01635 0.50 -2.2 365,303 - PFLU_RS01635 0.51 -0.3 365,303 - PFLU_RS01635 0.51 +0.8 365,303 - PFLU_RS01635 0.51 +2.6 365,303 - PFLU_RS01635 0.51 +0.2 365,303 - PFLU_RS01635 0.51 +2.4 365,303 - PFLU_RS01635 0.51 -1.7 365,306 + PFLU_RS01635 0.51 +1.2 365,306 + PFLU_RS01635 0.51 +0.6 365,307 - PFLU_RS01635 0.51 +0.3 365,307 - PFLU_RS01635 0.51 -1.3 365,307 - PFLU_RS01635 0.51 +2.2 365,307 - PFLU_RS01635 0.51 +1.7 365,307 - PFLU_RS01635 0.51 +0.6 365,373 - PFLU_RS01635 0.55 -1.3 365,396 + PFLU_RS01635 0.56 +1.4 365,396 + PFLU_RS01635 0.56 -0.8 365,396 + PFLU_RS01635 0.56 +0.4 365,397 - PFLU_RS01635 0.57 -2.0 365,397 - PFLU_RS01635 0.57 -2.1 365,397 - PFLU_RS01635 0.57 -0.2 365,397 - PFLU_RS01635 0.57 +1.1 365,397 - PFLU_RS01635 0.57 -0.5 365,397 - PFLU_RS01635 0.57 +1.3 365,420 + PFLU_RS01635 0.58 +0.9 365,421 - PFLU_RS01635 0.58 +0.8 365,421 - PFLU_RS01635 0.58 -0.2 365,493 + PFLU_RS01635 0.63 +2.7 365,493 + PFLU_RS01635 0.63 +1.4
Or see this region's nucleotide sequence