Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20795

Experiment: Recovery broth with Chenodeoxycholic 1.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS20790 and BBR_RS13675 are separated by 36 nucleotidesBBR_RS13675 and BBR_RS20795 are separated by 666 nucleotidesBBR_RS20795 and BBR_RS20800 are separated by 4 nucleotidesBBR_RS20800 and BBR_RS13680 overlap by 28 nucleotides BBR_RS20790: BBR_RS20790 - hypothetical protein, at 841,967 to 842,164 _RS20790 BBR_RS13675: BBR_RS13675 - glutaredoxin-like protein, at 842,201 to 842,452 _RS13675 BBR_RS20795: BBR_RS20795 - cystathionine gamma-lyase, at 843,119 to 843,286 _RS20795 BBR_RS20800: BBR_RS20800 - hypothetical protein, at 843,291 to 843,473 _RS20800 BBR_RS13680: BBR_RS13680 - SPFH domain-containing protein, at 843,446 to 844,357 _RS13680 Position (kb) 843 844Strain fitness (log2 ratio) -2 -1 0 1at 842.160 kb on + strandat 842.215 kb on + strandat 842.220 kb on + strandat 842.220 kb on + strandat 842.220 kb on + strandat 842.222 kb on + strandat 842.228 kb on - strand, within BBR_RS13675at 842.228 kb on - strand, within BBR_RS13675at 842.228 kb on - strand, within BBR_RS13675at 842.257 kb on - strand, within BBR_RS13675at 842.257 kb on - strand, within BBR_RS13675at 842.262 kb on - strand, within BBR_RS13675at 842.277 kb on - strand, within BBR_RS13675at 842.278 kb on + strand, within BBR_RS13675at 842.278 kb on + strand, within BBR_RS13675at 842.278 kb on + strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.286 kb on - strand, within BBR_RS13675at 842.353 kb on + strand, within BBR_RS13675at 842.365 kb on + strand, within BBR_RS13675at 842.400 kb on + strand, within BBR_RS13675at 842.408 kb on - strand, within BBR_RS13675at 842.408 kb on - strand, within BBR_RS13675at 842.510 kb on + strandat 842.518 kb on - strandat 842.518 kb on - strandat 842.552 kb on + strandat 842.562 kb on + strandat 842.628 kb on + strandat 842.628 kb on + strandat 842.695 kb on + strandat 842.695 kb on + strandat 842.700 kb on + strandat 842.708 kb on - strandat 842.717 kb on + strandat 842.767 kb on - strandat 842.785 kb on + strandat 842.937 kb on + strandat 842.943 kb on - strandat 843.008 kb on + strandat 843.064 kb on + strandat 843.072 kb on - strandat 843.072 kb on - strandat 843.111 kb on - strandat 843.233 kb on - strand, within BBR_RS20795at 843.244 kb on + strand, within BBR_RS20795at 843.275 kb on + strandat 843.285 kb on + strandat 843.323 kb on + strand, within BBR_RS20800at 843.450 kb on - strandat 843.476 kb on + strandat 843.484 kb on - strandat 843.502 kb on + strandat 843.502 kb on + strandat 843.506 kb on + strandat 843.514 kb on - strandat 843.555 kb on - strand, within BBR_RS13680at 843.599 kb on + strand, within BBR_RS13680at 843.605 kb on - strand, within BBR_RS13680at 843.705 kb on + strand, within BBR_RS13680at 843.722 kb on + strand, within BBR_RS13680at 843.728 kb on - strand, within BBR_RS13680at 843.728 kb on - strand, within BBR_RS13680at 843.762 kb on + strand, within BBR_RS13680at 843.770 kb on - strand, within BBR_RS13680at 843.779 kb on - strand, within BBR_RS13680at 843.796 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.838 kb on + strand, within BBR_RS13680at 843.847 kb on - strand, within BBR_RS13680at 843.851 kb on + strand, within BBR_RS13680at 843.884 kb on + strand, within BBR_RS13680at 843.892 kb on - strand, within BBR_RS13680at 843.894 kb on - strand, within BBR_RS13680at 843.929 kb on + strand, within BBR_RS13680at 843.931 kb on + strand, within BBR_RS13680at 843.939 kb on - strand, within BBR_RS13680at 843.939 kb on - strand, within BBR_RS13680at 843.970 kb on + strand, within BBR_RS13680at 844.101 kb on + strand, within BBR_RS13680at 844.107 kb on - strand, within BBR_RS13680at 844.107 kb on - strand, within BBR_RS13680at 844.146 kb on - strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.153 kb on + strand, within BBR_RS13680at 844.156 kb on - strand, within BBR_RS13680at 844.161 kb on - strand, within BBR_RS13680at 844.168 kb on + strand, within BBR_RS13680at 844.183 kb on + strand, within BBR_RS13680at 844.191 kb on - strand, within BBR_RS13680at 844.205 kb on + strand, within BBR_RS13680at 844.208 kb on - strand, within BBR_RS13680at 844.208 kb on - strand, within BBR_RS13680at 844.216 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680at 844.258 kb on + strand, within BBR_RS13680

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Chenodeoxycholic 1.3 mM
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842,160 + -2.6
842,215 + +0.3
842,220 + -0.0
842,220 + -0.1
842,220 + +0.1
842,222 + +0.5
842,228 - BBR_RS13675 0.11 -1.5
842,228 - BBR_RS13675 0.11 -0.5
842,228 - BBR_RS13675 0.11 +1.3
842,257 - BBR_RS13675 0.22 -0.4
842,257 - BBR_RS13675 0.22 +0.4
842,262 - BBR_RS13675 0.24 +0.5
842,277 - BBR_RS13675 0.30 -0.8
842,278 + BBR_RS13675 0.31 +0.1
842,278 + BBR_RS13675 0.31 +0.3
842,278 + BBR_RS13675 0.31 +0.7
842,286 - BBR_RS13675 0.34 +1.2
842,286 - BBR_RS13675 0.34 -1.7
842,286 - BBR_RS13675 0.34 -0.1
842,286 - BBR_RS13675 0.34 -0.0
842,353 + BBR_RS13675 0.60 -0.2
842,365 + BBR_RS13675 0.65 -0.8
842,400 + BBR_RS13675 0.79 -0.3
842,408 - BBR_RS13675 0.82 +0.1
842,408 - BBR_RS13675 0.82 -0.1
842,510 + -0.3
842,518 - -0.2
842,518 - +0.9
842,552 + +0.3
842,562 + +0.4
842,628 + +0.5
842,628 + -0.2
842,695 + -0.9
842,695 + -0.1
842,700 + +0.9
842,708 - -0.4
842,717 + -0.8
842,767 - -0.3
842,785 + +0.3
842,937 + +0.8
842,943 - +0.1
843,008 + +0.4
843,064 + +0.5
843,072 - -0.1
843,072 - -1.2
843,111 - -0.2
843,233 - BBR_RS20795 0.68 -0.4
843,244 + BBR_RS20795 0.74 -1.2
843,275 + -0.6
843,285 + +0.5
843,323 + BBR_RS20800 0.17 -0.0
843,450 - +0.6
843,476 + -2.4
843,484 - +1.3
843,502 + -1.6
843,502 + -0.0
843,506 + -0.7
843,514 - +0.5
843,555 - BBR_RS13680 0.12 +0.8
843,599 + BBR_RS13680 0.17 +0.5
843,605 - BBR_RS13680 0.17 -0.0
843,705 + BBR_RS13680 0.28 +0.3
843,722 + BBR_RS13680 0.30 +1.6
843,728 - BBR_RS13680 0.31 +1.3
843,728 - BBR_RS13680 0.31 +0.4
843,762 + BBR_RS13680 0.35 +0.2
843,770 - BBR_RS13680 0.36 -1.5
843,779 - BBR_RS13680 0.37 -0.8
843,796 + BBR_RS13680 0.38 +0.3
843,838 + BBR_RS13680 0.43 -0.2
843,838 + BBR_RS13680 0.43 +1.2
843,838 + BBR_RS13680 0.43 +0.2
843,847 - BBR_RS13680 0.44 +0.5
843,851 + BBR_RS13680 0.44 +0.2
843,884 + BBR_RS13680 0.48 +1.4
843,892 - BBR_RS13680 0.49 +0.3
843,894 - BBR_RS13680 0.49 +0.3
843,929 + BBR_RS13680 0.53 -2.0
843,931 + BBR_RS13680 0.53 -0.5
843,939 - BBR_RS13680 0.54 +0.7
843,939 - BBR_RS13680 0.54 +1.6
843,970 + BBR_RS13680 0.57 +0.7
844,101 + BBR_RS13680 0.72 -2.2
844,107 - BBR_RS13680 0.72 +0.5
844,107 - BBR_RS13680 0.72 +0.1
844,146 - BBR_RS13680 0.77 +0.2
844,153 + BBR_RS13680 0.78 -0.2
844,153 + BBR_RS13680 0.78 +0.5
844,153 + BBR_RS13680 0.78 -0.2
844,153 + BBR_RS13680 0.78 +1.1
844,153 + BBR_RS13680 0.78 -0.8
844,156 - BBR_RS13680 0.78 -1.6
844,161 - BBR_RS13680 0.78 +1.1
844,168 + BBR_RS13680 0.79 -0.7
844,183 + BBR_RS13680 0.81 +0.8
844,191 - BBR_RS13680 0.82 +0.5
844,205 + BBR_RS13680 0.83 -0.5
844,208 - BBR_RS13680 0.84 -1.2
844,208 - BBR_RS13680 0.84 +0.4
844,216 + BBR_RS13680 0.84 -0.3
844,258 + BBR_RS13680 0.89 -0.4
844,258 + BBR_RS13680 0.89 +0.0
844,258 + BBR_RS13680 0.89 +0.0

Or see this region's nucleotide sequence